RNA id: XM_039824850.1


Basic Information

Item Value
RNA id XM_039824850.1
length 5662
RNA type mRNA
GC content 0.49
exon number 30
gene id LOC120574502
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15746791 ~ 15788515 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAAAGTGGAGCCTCTCCTACGCACCGACGGATGAATATCCTCGACCTGTTGCCTCGGTGGGAAGAAAAGTAGAGCTGCGTTGTGACAGAtgccaaaaaagaaagaacttgtttttttctgttttgaagGGAGGTCGAAGACGATGCCATGAGGTGTATCAATGTGTTCGTTATTAATCTACGTTTTGAATAGCAGAAGGAAGAGGAGCGGGGTTGGTTTTGAGGGGTCCACCTCGCTGTGGAGGTGCAGTTTGCGGTGAtatctgtctctatctctggGCCGTGAGGAGGAGGACCATGGTCGAACTGGAAAAGGAGGTGCTCCCTCTGCCCCCTCGGTACCGGTTCCGAGACCTGTTGCTCGGTGACTGGCAGACCGACGACAGGGTGCAGGTAGAGTTCTATGTGAATGAGAACACTTTCAAGGAGCGCCTCAAGCTGTTCTTCATCAAAAACCAAAGATCCAGTCTGCGAGTGCGAATGTTTAACTTTTCTCTGAAAGTGCTGAGCTGCCTTCTCTACATTGTCAGAGTCCTATTGGACAACCCACAAGACGGAAGACAAGACTGCGTGAACGGAGTAAACTGcagcaaacaaaacacaacatcgCGTCCCTGGAGTGAATTTGACTGGAAATTGATCATCTGGGTGGATAGACCTCTACCGCTGTGGGCACTGCAGgtGCTTGTAGTTTTCATCAGCTTTTCAGAAACAATGTTGCTCGTGTATCTCAGCTACAAGGGCAACGTTTGGGAGCAAGTGTTACGTGTCCCCTTTATTCTGGAGATGATCAGCGCCATTCCTTTCATGATCACTGTGATTTTGCCCTCCTTCAGAAATCTCTTCATCCCTGTATTTCTCAATTGCTGGCTGGCAAAACACGCTCTGGAGAACATGATAaatGATCTCCATAGGGCGATCCAGCGGACGCACTCAGCCATGTTTAACCAGGTGGTGATACTAATCAGCACGCTGGTCTGCCTCATGTTTACGTGCATCTGCGGCATCCAACACCTCGAACGAGCGGGCAACAACCTGACCCTGTTCGACTCGCTCTACTTCTGTGTGGTCACCTTCTCCACGGTGGGCTTTGGAGATGTCACCCCCCAAATCTGGCCCTCGCAGCTCCTGGTGGTCATCATGATCTTCGTGGCACTCATCGTGCTTCCCATCCAGTTCGAGCAGCTGGCCTTTCTGTGGATGGAGCGGCAGAAGTCCGGGGGGAACTACAGCCGCTACAGGGCACAGACGGAGAAACACGTGGTGCTGTGCGTCAGCTTTCTCAAGATCGACCTCCTCATGGACTTCCTCAATGAGTTCTTCGCTCACCCCCGACTACAGgactaCTATGTGGTGATCCTTTGCCCAGCAGAGATGGATGTCCAGGTTCGGAGGGTCCTACACGTTCCTCTGTGGGCCCAGAGAGTCATCTACCTGCAGGGTTCCGCCCTTAAAGACCAAGACCTGATGAGGGCCAAGATGGACGATGCTGAGGCCTGCTTTATCCTCAGTAACCGGTTTGAAGTGGACCGTATTGCTGCTGATCATCAGACCATCCTCCGAGCCTGGGCAGTGAAAGATTTCGCTCCAAATTGCCCCCTCTACGTCCAAATTCTCAAGCCAGAGAACAAGTTCCACGTCAAATTTGCAGATCACGTGGTGTGTGAAGAAGAGTTTAAGTATGCCATGCTGGCTTTAAactgtgtgtgccctggtaccTCGACACTCATCACTCTATTGATCCactcctccagaggacaaatgGCACCCCAAGAGGCCTTCAAGCAACGTGTAGGAGCATTTCAAGCTCTCAACAGGGAGGGTGGTGCATGTTCAGCAGACCAGTGGCACCGAACCTACCGCCGCTGCTCAGCCAATGAGGTGCATCACATCCGCCTAGAAGAAAGTAAATTCTTCGGGGAATACCAGGGCAAGAGTTTCACCTTTGCCTCCTTTCATGCTCACAAAAAGTATGGAGTATGTTTGATTGGAATACGCAGATTGGACACCACCAACATCCTACTGAACCCTGGTCCCTGCCACATCATGGGGGCCTCTGACACATGCTATTACATCAACATCTCCAAAGAGGAGAACTCGGCATTTGTCAGGGGCCACAGTGAGCCATCATGGGGCGGCACGGGAGGAAATACCAGGGGAGTGCACCAAACCATCTACCATGGACTCACCCGCCTGCCCGTCCACAGTATCATCGCAAGCATGGGCACAGTGGCCATTGACCTGCAGGACTCCAGTGACAGCAGCCCAGAAGGCCAGGACCCGGGGAGCACCGTGCTGGGCAGCAGAAGAGAAAGCAGGAGCAGCTCCCGGACGGAGATGAGTGGCACTAACACTTTGGCCCTGCCTGCCATGGGAGAGTCTGCAGAGGAGAGGCGGCACAGCATCGCCCCTGTCCTGGAGCTGGTGGACGGTGTCAACAACCCCGCCTTTGACCTGCTCGGAGACCAATCAGAGGAcgagggaggagaagagggcAAAGAGGACAGTGACAGAGATGAGAGTGCCCACTGGTGGGGTCGACACTGCGAGTGGGTGAAGGGATACCCGCTGAACTCTCCATACATCGGCAGCTCGCCTGCGCTGTGCCACCTTCTTCAAGAAAAGATGCCTTTTTGCTGCCTGCGTATGGACAAGGCTTGTCACCACATCTCTTTTGAGGATGCCCGCTCCTACGGCTTCAAAAACAAATTGATCATTGTGTCTGCAGAGAGTGCAGGAAACGGTCTGTACAACTTCATTGTGCCTCTACGGGCCTACTACAGACCCAGAAAAGAACTCAACCCCAtcgtgctgctgctggagagtGTACCTGAAGCAGACTTCCTGGAGGCAATCTGTTGGTTCCCCATGGTGTTCTACACAGTGGGCTCCATCGACAATCTAGACAGTTTGCTGCGATGTGGAGTCACTTTTGCCGACACCATGGTGGTGGTTGACAAAGAGAGCTCCATGATTGCAGAGGAGGACTACATGGCCGACGCAAAGACCATCGTCAATGTGCAGACCCTCTTCAGACTGTTCCCAGCTCTAAGTATCATCACAGAGCTCACCCACCCAGCCAACATGCGCTTTATGCAGTTTAAGGTCAAAGACCACTACtctctggctctgtccaaactGGAAAAGAAGGAAAGGGAGAAGGGGTCCAACCTGGTGTTTATGTTCCGCCTGCCCTTCTCTGCAGGGAAGGTGTTCAGTGTCAGCATGCTAGACACTCTCCTCTACCAGTCATTTGTGAAGGACTACATGATCTCCATCACCAGGCTGCTGCTGGGTTTAGACTCCATGCCTGGCTCAGGTTTCCTTTGTGCTATGAAAATCACAGAGGATGACCTGTGGATCCGCACCTACGGCAGGCTCTACCAGAAACTGTGCTGCTCCACTGGAGACATTCCCATCGGCATCTACCGGACAGAGGCACAAAAGCTTCCAGTCTCTGAGTCCAAGGTATCCATCACAGTGGAGGACTACGAGGACACCAGAGAACCCAGAGAGCCCCTTTTGTCCCGGAGCGGTGCTCACCGTAACTCCACCTCTTCGGAGCCCGTCTCCACCTCCTCCCACTCCTCAGACCACCCGCTGCTCAGGAGAAAAAGCATGCAGTGGGCCCGGCGGCTGAGCAGGAAGGGAGGTCGGGGCTCCAGTGGGGCCAAGGGGGGTGCAGGCAGCGCGGCAGAGAGGATCAACCAGCAAAGACTGACCCTGTTCAGGCGCTCGGAGAGGCAGGAACTCAACGCCCTGGTGAAAACGAGGATGAAACATCTGGGCCTTTCTTCAACTGGATTTAATGGGATGACAGACCAAGGGAACAGACTGTCTTATATCCTCATCAACCCTTCTCCAGACACCAGACTGGAGCTGCACGATGTTGTATACCTGATCAGACCAGACCCCCTCTCTCTGGTACCCAATCAGGGTAACAGCAGGAAGTGCAGCGCCGGGATCTCAGAGAGTCACAGGTTCGATACACAGGACAGCACCCATCTGTGAGAGGGACAGATATACTGTCAGAACACtgccagagagaggagacacagcaacagaaacaacaacaacaacaacaacaacagaaatcaAGAAATGGTGGGCTGCAAAAGGATGCAGCTAGAAGGCACGTCTCCCTCATACAGTATTTTCTCCACATTCAGTCTCGGGGAACTGATAGGTGCCGTTCTTGCATGGACCTTTTCTATAACGATGGGAATGTTTTATTTATGCACCTTTCTATTTTCAAAGTGGAAAGCTGTGGACACAGAAGTGCATTTAATGAAAAACGTATGTATTTATCATATCTGTGCATGTTATGTACTGCacactactgtgtgtgtgtttgtgtttgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgatctgTAGAAGGAAAGGGAGAAGGGGTCCAACATGGTGTTTATGTGAATAAACGGGTGTGCACGTGCATGTGCGTTCAAGTGTGTGAATAGAAACAAGAGTGAGACACTGCCAATTTGATCAGGACAGCGAAAGGAATCTGCTGCCAAATGAAAGGGAAAGGATGTATTTTTGTGTCGTAAGTGTGTTTTGTCAGACTTAATGTTTGAAGTATTTGAAAGTGACACTACAGTGCACACCCCTTTCTTTTTGGTCTTCATAAAGCCTTTTTGAAACTTTTTACCTGTTGCTTACACAGTCAAACGCACACATTTGTTTTACGCTCACCAGCAGCGGAGGAATCCAAAGAGCATCAGTCTCAATAATTGACAGACAGCATGCATCGTCATTGCAGGGCATTCAGTCACATTGCTATCTGAAGTATGTTATTGTCTTCAGCTATGTGAGTCCTCCTAGAACAAATCTGTTCCTGATTTTATGGTTCGCCTGTTGTTTCTTAAAGTCCCGCCCTCTCTGCTTCTGTCAGTCAGTGTGAGCCGTCCTGCCACCAGCTTGTTTTTTCTGACATGCATGTTATGCACTATGCAGGGGATTGACAAAATAACAGGACCATATACCATAACATAATGCCATCCAGTGCAACAGCCCTGCAATGAAAACTACCTTTGTGAAGCTCATAATGCAACGGTTTAGAGACCTGtcagagaggtgttgattcagcTGTCAGTTTTAAAGCCGATTTATAAGCTTTACAATTCATAGTTGCTGTATTTATTGCATGATAAATATCCACTTTAACAAGTAATTCGTTTGCTAATTaagaattaaaatatataatataatttggttttcaggaagaaaacaaattgaATTTCAAGTGAAAAATGTGCCAGTAGAGTAAGATTATTCTGCTTGTTTATCAGCCTAGTTTACCTTTTTTCATAGATTTTCAGTTGTTTTCAGAAACCTGAGGTTTTAATTTGTTATATTAAAGTACATTACTTGTTAGGGTGGACATGTATGCCGTTTGTTTACTAAGGATTTTCAAGCCTCTGTAAATCTTTTGTCAGATATTCTAAATGTGCTGTTTCACACAGAAATAGTGCAGCCATGTGGTAAGAATGCCTAACTGCATCCCTGCCAACATCACTGCTGTAGCTTTAGTGCCATTATTACAGatgaaaatatgtatatattaaagTCAGTCATTATA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0015269 calcium-activated potassium channel activity molecular_function

KEGG:

id description
K04947 KCNT2, KNA1.2; potassium channel subfamily T member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210486 lncRNA downstream 51233 15694773 ~ 15695558 (-) True G155298
TU210482 lncRNA downstream 55139 15682369 ~ 15691652 (-) True G155295
TU210397 lncRNA downstream 113955 15551004 ~ 15632836 (-) True G155239
TU210400 lncRNA downstream 191905 15554043 ~ 15554886 (-) True G155242
TU210389 lncRNA downstream 202774 15541557 ~ 15544017 (-) True G155234
XR_005641874.1 lncRNA upstream 34476 15822991 ~ 15825654 (-) True LOC120574547
TU210521 lncRNA upstream 35378 15823893 ~ 15825649 (-) False LOC120574547
TU210562 lncRNA upstream 102506 15891021 ~ 15891931 (-) True G155359
TU210686 lncRNA upstream 265475 16053990 ~ 16054756 (-) True G155439
TU210722 lncRNA upstream 322184 16110699 ~ 16112063 (-) True G155460
XM_039824914.1 mRNA downstream 1219 15741763 ~ 15745572 (-) True LOC120574537
XM_039824905.1 mRNA downstream 22369 15717847 ~ 15724422 (-) True tecra
XM_039824926.1 mRNA downstream 73336 15670165 ~ 15673455 (-) False crb3a
XM_039824925.1 mRNA downstream 73336 15670165 ~ 15673455 (-) True crb3a
XM_039824836.1 mRNA downstream 82194 15662274 ~ 15664597 (-) True LOC120574497
XM_039824895.1 mRNA upstream 1536 15790051 ~ 15796449 (-) True qtrt1
XM_039824920.1 mRNA upstream 44985 15833500 ~ 15837068 (-) True tmed1a
XM_039824840.1 mRNA upstream 105494 15894009 ~ 15949589 (-) True adgrl1a
XM_039824842.1 mRNA upstream 111069 15899584 ~ 15990185 (-) False adgrl1a
XM_039824843.1 mRNA upstream 111069 15899584 ~ 15990185 (-) False adgrl1a
TU210508 other downstream 2674 15743675 ~ 15744117 (-) False LOC120574537
XR_005641871.1 other downstream 22369 15717847 ~ 15724422 (-) False tecra
unassigned_transcript_854 other downstream 182587 15564133 ~ 15564204 (-) True trnae-cuc_25
TU210305 other downstream 297288 15443164 ~ 15449503 (-) False metrnla
unassigned_transcript_853 other downstream 736451 15009798 ~ 15010340 (-) True LOC120573850
TU210517 other upstream 24543 15813058 ~ 15815369 (-) True G155323
XR_005641873.1 other upstream 365272 16153787 ~ 16156067 (-) False LOC120574545
XR_005641872.1 other upstream 365272 16153787 ~ 16156067 (-) False LOC120574545
TU210689 other upstream 365336 16153851 ~ 16156027 (-) False LOC120574545
TU210688 other upstream 365666 16154181 ~ 16156027 (-) False LOC120574545

Expression Profile