RNA id: XM_039824914.1


Basic Information

Item Value
RNA id XM_039824914.1
length 934
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC120574537
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15741763 ~ 15745572 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGCCAAACTTAAGGCCAAACATTCTGCAAGGGCTTTATGCAAGATCTCAGACAGAGAATTGTGCTAATAGAGACAGAGGAAATGGCAGCTCAACCAGTCAGCGTGCTTATCACAGGAGCCAACAGAGGCCTGGGCCTGGAGATGGTTAAGCAAATGGTGGAGGCCCCCCGTCCAGTGACAAAGCTATTCGCCTGTTGCAGGGACCCAGATGGACCCAGAGCTGAGGCCTTGCAAACATTGGCAAAGAAGAATCCTAACATCATTTCTGTTGTCCGTCTGGacGCCACTGACCTTTGTAGCATAAAACTGTGCGCCCAGGAGGTGGGCTCTGTGGTGGGGACGGGGGGTCTCAACCTGCTGATTAACAACGCAGGCATCATGGCCAAAGGCACTGTGCAGGAAACCAGTCCTGAGGACATGCAACATACCTTCAACACCAATGTCATGGGCCCTATGAACATGATTAAAGAGTTCCTGCCTCACCTGCGTGACGCAGTGAAGGCCAGTGGAATGCCTGGGATGTCCATCAGCAAAGCAGCCGTCGTCAACATCTCCTCACTTTTGGGTTCAATGGAAGCTTTAAAACAGTCGTATGCCTTCTGCCCTGTCGTATCCTACCGCATCAGCAAGGCAGGTTTGAACATGCTGACAGTGTGTGCTgcagaggagctgaagaaggatGAGATTCTGTTCTCTCTGCTGCACCCTGGCTGGGTGCGCACTGACATGGGTGGAGAGGAGGCGGACATTGATGCTCAGGAGAGCGCGGAGGGGATGCTTAGCGTGATGGGTTCCCTGACTGAGAAGCAAAACGGAGCCTTCCTGGATTATAAGGGCCAATCCATCCCCTGGTAGCTTCAAACAACCACTTCAAAAACTGCAGTCATTCAGTAAATGAACCCAAGTGAAATAAACCAATACTTGTTCTAATGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210486 lncRNA downstream 46205 15694773 ~ 15695558 (-) True G155298
TU210482 lncRNA downstream 50111 15682369 ~ 15691652 (-) True G155295
TU210397 lncRNA downstream 108927 15551004 ~ 15632836 (-) True G155239
TU210400 lncRNA downstream 186877 15554043 ~ 15554886 (-) True G155242
TU210389 lncRNA downstream 197746 15541557 ~ 15544017 (-) True G155234
XR_005641874.1 lncRNA upstream 77419 15822991 ~ 15825654 (-) True LOC120574547
TU210521 lncRNA upstream 78321 15823893 ~ 15825649 (-) False LOC120574547
TU210562 lncRNA upstream 145449 15891021 ~ 15891931 (-) True G155359
TU210686 lncRNA upstream 308418 16053990 ~ 16054756 (-) True G155439
TU210722 lncRNA upstream 365127 16110699 ~ 16112063 (-) True G155460
XM_039824905.1 mRNA downstream 17341 15717847 ~ 15724422 (-) True tecra
XM_039824926.1 mRNA downstream 68308 15670165 ~ 15673455 (-) False crb3a
XM_039824925.1 mRNA downstream 68308 15670165 ~ 15673455 (-) True crb3a
XM_039824836.1 mRNA downstream 77166 15662274 ~ 15664597 (-) True LOC120574497
XM_039825322.1 mRNA downstream 96141 15605503 ~ 15645622 (-) False gcgra
XM_039824851.1 mRNA upstream 1219 15746791 ~ 15788515 (-) False LOC120574502
XM_039824850.1 mRNA upstream 1219 15746791 ~ 15788515 (-) True LOC120574502
XM_039824895.1 mRNA upstream 44479 15790051 ~ 15796449 (-) True qtrt1
XM_039824920.1 mRNA upstream 87928 15833500 ~ 15837068 (-) True tmed1a
XM_039824840.1 mRNA upstream 148437 15894009 ~ 15949589 (-) True adgrl1a
XR_005641871.1 other downstream 17341 15717847 ~ 15724422 (-) False tecra
unassigned_transcript_854 other downstream 177559 15564133 ~ 15564204 (-) True trnae-cuc_25
TU210305 other downstream 292260 15443164 ~ 15449503 (-) False metrnla
unassigned_transcript_853 other downstream 731423 15009798 ~ 15010340 (-) True LOC120573850
unassigned_transcript_852 other downstream 741619 14998773 ~ 15000144 (-) True LOC120574429
TU210507 other upstream 1745 15747317 ~ 15749430 (-) False LOC120574502
TU210517 other upstream 67486 15813058 ~ 15815369 (-) True G155323
XR_005641873.1 other upstream 408215 16153787 ~ 16156067 (-) False LOC120574545
XR_005641872.1 other upstream 408215 16153787 ~ 16156067 (-) False LOC120574545
TU210689 other upstream 408279 16153851 ~ 16156027 (-) False LOC120574545

Expression Profile