RNA id: TU210686


Basic Information

Item Value
RNA id TU210686
length 671
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G155439
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 16053990 ~ 16054756 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgccaaacatcacatatatgattattgtgacagagactgggactccagcttaataagattctgactgagtagcaagatatgaattcaattgtgattctgtgagaattcacagatccagtttctcttttttaattgtccccttaacatttaaaggaatctacatgtatgtgtgtgtgctcaaatatagaaagaaaataaaggatacaatatgaattactaaacatagattaattaagaagttccccatacttttagagttacacagcacattggccaggagtcatacttgatgcctcctagcctatctcaaacatctccatactgctagtgctaacgttaccgccatcaagctgcaatgatttgccgcaaatgaatgcagaatgcggccgaatctgtcgagtcgtcttgtagtggtgcgttacatgcaacgtagcctacagtatattcccatccaattagattgaattcggtattgatcacgtgaaaaataataacggtaactccagtgaaattatttgaaacttgttagtgaggactagattaggaccgtatttaaagctgatgctggtttccaacttcgcccccccctccctcccccaggtgtgtctgtaaaacacggacagagacaacttctctcttttgatgctttacaagcaacgtgaaacctagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210562 lncRNA downstream 162059 15891021 ~ 15891931 (-) True G155359
XR_005641874.1 lncRNA downstream 228336 15822991 ~ 15825654 (-) True LOC120574547
TU210521 lncRNA downstream 228341 15823893 ~ 15825649 (-) False LOC120574547
TU210500 lncRNA downstream 279682 15728933 ~ 15774308 (-) True G155307
TU210486 lncRNA downstream 358432 15694773 ~ 15695558 (-) True G155298
TU210722 lncRNA upstream 55943 16110699 ~ 16112063 (-) True G155460
TU210723 lncRNA upstream 60352 16115108 ~ 16115522 (-) True G155461
TU210724 lncRNA upstream 62363 16117119 ~ 16118492 (-) True G155462
TU210743 lncRNA upstream 116167 16170923 ~ 16172305 (-) True G155481
TU210762 lncRNA upstream 149772 16204528 ~ 16223250 (-) True G155493
XM_039824842.1 mRNA downstream 63805 15899584 ~ 15990185 (-) False adgrl1a
XM_039824843.1 mRNA downstream 63805 15899584 ~ 15990185 (-) False adgrl1a
XM_039824844.1 mRNA downstream 80018 15899584 ~ 15973972 (-) False adgrl1a
XM_039824845.1 mRNA downstream 81201 15899584 ~ 15972789 (-) False adgrl1a
XM_039824840.1 mRNA downstream 104401 15894009 ~ 15949589 (-) True adgrl1a
XM_039824886.1 mRNA upstream 34658 16089414 ~ 16092725 (-) True trim35-13
XM_039824872.1 mRNA upstream 40955 16095711 ~ 16098989 (-) True vac14
XM_039824903.1 mRNA upstream 46988 16101744 ~ 16104608 (-) True LOC120574529
XM_039824899.1 mRNA upstream 51251 16106007 ~ 16107896 (-) True LOC120574526
XM_039824928.1 mRNA upstream 99372 16154128 ~ 16156067 (-) True LOC120574545
TU210517 other downstream 238621 15813058 ~ 15815369 (-) True G155323
TU210507 other downstream 304560 15747317 ~ 15749430 (-) False LOC120574502
TU210508 other downstream 309873 15743675 ~ 15744117 (-) False LOC120574537
XR_005641871.1 other downstream 329568 15717847 ~ 15724422 (-) False tecra
unassigned_transcript_854 other downstream 489786 15564133 ~ 15564204 (-) True trnae-cuc_25
XR_005641873.1 other upstream 99031 16153787 ~ 16156067 (-) False LOC120574545
XR_005641872.1 other upstream 99031 16153787 ~ 16156067 (-) False LOC120574545
TU210689 other upstream 99095 16153851 ~ 16156027 (-) False LOC120574545
TU210688 other upstream 99425 16154181 ~ 16156027 (-) False LOC120574545
TU210768 other upstream 176028 16230784 ~ 16259025 (-) False LOC120574432

Expression Profile