RNA id: XR_005641873.1



Basic Information


Item Value
RNA id XR_005641873.1
length 786
RNA type transcript
GC content 0.46
exon number 5
gene id LOC120574545
representative False

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 16153787 ~ 16156067 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ATCAGATAGTATTAGGTGTGTAGTGTAGCTTCTGCAAAGACTTGACTGGCTCCACATGTAGAAGTACTGGTGCTATAACCTTGGTTGATCAGTTTCTTCGTTTGAGACAAGCCTAAAAAGAGCAACATGCAGGCTGCTATGGATATCACGGCAAAGTATTGCCATAAAGAAATGGAGGCGTATGGGTCATGTGTAGCCTCCAACCCATCGACATGGCAGTTAAAGTGTCATGAACTGAAGATTAAGGTTGCACAGTGCACATCATCACATCCAGTGATCCAGAAGATCAGACAGGATTGTTCCTCTGAGTTTGTAGAGTTTGAGCGCTGCCTGAGAGAAAACCAGGACAAACCTACCTCCTGCTCACAACATGTGGCTCGCTTTCTGGGCTGTGCAGAGACCGTAGACCTCAGTGGAGTAGACCCAGTACCTCAGCCATCGTAGCATTCAGGCATCTTCCATCGCCTTCAGATTACTCCTGTCTCCACAGCAGCACAGATGGGCTGGTCTCACAGGTCTGAGTCAGAGTCAAATATTAAACTGGAATGAATCACTCCCGCACAAACTCTCCTGAGTACTCAATGACTAAGAAATAGGGAGTCTGGGAagaaaggagaaggaggaggctgTCCACTTCTAATCTGCGGGActactgagagagacagagggagtaTATTGAGTTATGAGCCCTGTGACCACTAAGCAGAACATACCTTTTCTGGTTCAATTATTAAAGCTTTGAAGAGGAGGGGAAAATGATTCATTTCTTTTCAAGTGTAATCTCTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU210724 lncRNA downstream 35295 16117119 ~ 16118492 (-) True G155462
TU210723 lncRNA downstream 38265 16115108 ~ 16115522 (-) True G155461
TU210722 lncRNA downstream 41724 16110699 ~ 16112063 (-) True G155460
TU210686 lncRNA downstream 99031 16053990 ~ 16054756 (-) True G155439
TU210562 lncRNA downstream 261856 15891021 ~ 15891931 (-) True G155359
TU210743 lncRNA upstream 14856 16170923 ~ 16172305 (-) True G155481
TU210762 lncRNA upstream 48461 16204528 ~ 16223250 (-) True G155493
TU210771 lncRNA upstream 103752 16259819 ~ 16262030 (-) True G155500
TU210780 lncRNA upstream 123424 16279491 ~ 16280224 (-) True G155507
TU210781 lncRNA upstream 124316 16280383 ~ 16281568 (-) True G155508
XM_039824899.1 mRNA downstream 45891 16106007 ~ 16107896 (-) True LOC120574526
XM_039824903.1 mRNA downstream 49179 16101744 ~ 16104608 (-) True LOC120574529
XM_039824872.1 mRNA downstream 54798 16095711 ~ 16098989 (-) True vac14
XM_039824886.1 mRNA downstream 61062 16089414 ~ 16092725 (-) True trim35-13
XM_039824842.1 mRNA downstream 163602 15899584 ~ 15990185 (-) False adgrl1a
XM_039824890.1 mRNA upstream 52183 16208250 ~ 16215393 (-) True lpar2a
XM_039824891.1 mRNA upstream 52183 16208250 ~ 16215333 (-) False lpar2a
XM_039824889.1 mRNA upstream 52183 16208250 ~ 16214958 (-) False lpar2a
XM_039824690.1 mRNA upstream 65292 16221359 ~ 16229857 (-) True brd4
XM_039824691.1 mRNA upstream 74392 16230459 ~ 16245425 (-) True LOC120574432
TU210517 other downstream 338418 15813058 ~ 15815369 (-) True G155323
TU210507 other downstream 404357 15747317 ~ 15749430 (-) False LOC120574502
TU210508 other downstream 409670 15743675 ~ 15744117 (-) False LOC120574537
XR_005641871.1 other downstream 429365 15717847 ~ 15724422 (-) False tecra
unassigned_transcript_854 other downstream 589583 15564133 ~ 15564204 (-) True trnae-cuc_25
TU210768 other upstream 74717 16230784 ~ 16259025 (-) False LOC120574432
TU210769 other upstream 74717 16230784 ~ 16245331 (-) False LOC120574432
TU210878 other upstream 413379 16569446 ~ 16642131 (-) True G155583
TU211128 other upstream 876982 17033049 ~ 17035018 (-) False polr3k
TU211291 other upstream 1259458 17415525 ~ 17415841 (-) True G155888

Expression Profile