RNA id: TU210762


Basic Information

Item Value
RNA id TU210762
length 3544
lncRNA type read_through
GC content 0.41
exon number 2
gene id G155493
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 16204528 ~ 16223250 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttttcttttttttCACACTAaatcattttattaattttctaATAAGAACACTACAATTTGTCATATTCTTCCTTTTGTTTTACTCTTTCTAGAACAATTCTAAAGTTTGAGGTATAAAAGGAGTTCATACAGACTCACAAGTCTGAAAACAGTGGGGGTTATATACAAGAGAAATGGAAAGAcagaggtagagagaggggTAAATACAAGGGAAAGAGGGGAGATACAAATATactaataaaaacaaagaaatcaaAAAGGTTTAAGAAGCAATTTGGTGCTGTGGAAGTAATTCAGTCACTTGCAGAATCAAAACAATATTTAAACATGAGCAACGGTAAAAATTGGTCAAATTAAGTTCTGTATAGATCTGCAGATCTGTTGCAAAAATTCAGGGGACCATACAATGTTTACAATGATGTCCAAGTTCGTAAGCTTGAATTATTTTGCTAGTGTAGACCATCAAAGTGTAGACCATCTGCTTTAATGTGAAGGGCTGCCTCTTCCTGTTTTAGGGTCACTTTAACTTTAACTATTTTAAATGATGTTGCCATTTAGCAGTTAGTCGGATTCCTCAAATAAAATTCAGTATTAACGTCCTCCGTTGTATGCACATATAGTGGTTGCATATTATCGcaatatttctgcattaaaaaatGAGCTGCTTGAATAGTTTCTGGGGATAAGCTTTCCCCAAACAGGCAACATCTGCACCTGCACAATTTAACTGTCCATGTAAAAACAGTTTCAAAACTCCTTTtgccacagaaaaaaaaacaaaaaaagatttaaaattaaatgaagcACAAATGGTTGAATATTTGTGTGGAGAAGGTGGAAACTGAAAGGGAATCTGATGGGGAAGGAGATCCATAAATCGGCAAAATACACCAAATGTCCATTGGAGAACCTCAATTGATACAATTGTCTTTCCACAGCACCAAATGTTACACATGTAAACCCTACATTGCCACCCGGTTATGTAACAAAAGACCTAAATAATATTCAAAATTGGTACAGAGATATCATGAATCCTGTGACACAAAGGCCAAATAAAAATGGCATTTCAACCAAACATCAAagtttataaaagaaaaaagaaatactgaAACATTACACAAACTGTACAGTGACATCCATTACAACAGGTAGAAAAGGGAAGGGGGGGCAGGGGGGCATGATAATTTGGTGTGGCGATAACGTTATTCATAAGATACAGTCATATGAACCGCGATGAGTAACAAAACAAGTAATTCGATGTGGGATATCACGTGACCAGCTTATAAGCTCAAGTTTTGTTCTGTAACATAATGGTTTAACAACAAAATGGTTTCTCGACTGACACATCTTTATAAGGCGTTACCTTACTATCAAAATGCTTTGTTATTCACATAACAGTTAATGTATAAAATAGTTCCAAAGAATGAATATCCCCCAAAACGTTGCAGGTTTGTCTTAAACACGAGTTAAGAGTTTTACTACACCCAGTGTTGCCTCTTTTTTGGTaacagaggagagggagaagccCTTGCCCAATTGGCCATAGAACTGAAAACAAAATAGTTGGTTTTACCAGCAAGTATTAAAGGATGGGTTAAGGGGAGAGCATACCTTATATGCCCCCAATCAAATTACAGGTGTGATATGACAGTCCTTACTCCACCCACCCTCCCCGTGTCGCCCCACAACAAAACCCCTAAAAACCAAATCAACTTGAGGCATGACAacaccacacagagagacacagatacaaATATAATTCCCTCCTTTCCTCGAACTGAAAAGGCGGCTGTGCACCAACTTTAGAGAGACACAGAGTAGCATTATTACATTGCTGAACGTGGTATTTTTGGTTTTGGTACAACGGAAGGTTGTAGTGTGTTGCCTCGGGCTCACAAGCTTAAATGTTTCAAGATGGGGGAGGAGATCTCGGTTGAACCCCACCTGGTGTGTCATTGGCTGGCGGAAGCACCCAGTCTCTAGAATGCTTACAAAGGTCAGAGGGCACCAGCCGGTTTGACTAAGACATCCCAAGAACACTGTACACACGcccgcacagagacacacacacacatcatagcaATACATGATGCACTTTTTCCTTTTTGGTCTGACTGTAATAATTAtacccttttatttttttgttaataaaaacGAAGCTAAAAACTTGGAAggttaaatgaaaacaatatcACGCCTAGAATTCCTACATGCATGGAAGACAGTCACGTTTCTAAATTCTCGTCACGTTTGTCCCAATAAACACATCAATGCCCCACAATCTTTCCACTTGTCTCCTTTAACATCATTTAAAAGCTTTATTGAGCTCATTTTTGGTGGTGGCTGGTGCATTCTTGGTGAAACAGCATTAGAAAATAGCCTACAATCAAATAAACTAGTGGACAGAAAGCAAGAAATAAAGTCTACAAGCCATCTACCAACACCCTCTATTGGTTAGCAACAAAAAGGGCTATTAGTTACATCCACTCACCCAAAAGATATTCTCCTCTCTCTGccctttcctcctcttctcacCAGCCCTATTATCACCTGTCCTGCCTGGTTTAGAACAGTGATCCCCTTAACTACCCTTTTACAGGTAGAGACACCCATTACAAGGATGCTAACTTTTGTGCTTGACACATCTTTTATGTCAGCTCACTATGAAAACGACTGAAAAGTGGTGTGTGTTATGgcaggggggagggggtgcATGCACATTTGTGCATATCTTAATTATTCACTTTGTTTAAATCTCCAACAGAATTAAACATCAAGCTATAAGGACTGGAAGATAACAGTGTCTCGTGTTGAGTTGGCAGAGGGTGATCTCAGAGGAACAGATGTGTTGACAACTACTGGGGCAGCACTTTGGTACGAGCAAGGTGAGCTGAGCTCTCTGGTGATGCCTATCAACAGTTTGGCTGTCAAATGCCAAGGCTTCAAGAGATACAGGCAATCACACACAGTTTTCCAAAGCAAAGGGTCGAGTGCAGAGGTCAACAGCACATGGACAAGCTGTGTGAGTACTGTGTGACGTTAACGTGCATATACACATAATGTACAGACATCGTGATCATCTACACAGCTGGGtcagtggtttttttttttcttttttttcgttgttttttttcaaaaagtcctTGATAGTGTAGATGTTTTCTATCTGTGTCAGCAGCAGTAAGCTCCATCCCTCATTTATTCTGAGTTAAGGAGCTTCTAGCATTGAAGTGGAGCTGTGGGGTGGAGGGAGAACTCCTCCTCTTGTTCGGCTGTCCTGTGTTCCAGcacagtgtgtgtttatgaaatGTGGGCACAACCTTGTGTGGCTGTCCTGTTGAGAGACGAGGGAGTGGTGAAAAATGAAGACAGAGGATGGTAGTCCGAGCAGACCGCAGTGGGAATGAAGTGACGGCAGGGAGAGCCACCGAATCAGTTGGAGGTGTCGGAGTGGACGCTACCAGGAGGACCGGGAGGAGAGGTGACCGAGGGGGGGTTGGTGGTGTCCTGCCAGCTGTTAGCCTGAAAACAGTCAGGGAAGAG

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210743 lncRNA downstream 32223 16170923 ~ 16172305 (-) True G155481
TU210724 lncRNA downstream 86036 16117119 ~ 16118492 (-) True G155462
TU210723 lncRNA downstream 89006 16115108 ~ 16115522 (-) True G155461
TU210722 lncRNA downstream 92465 16110699 ~ 16112063 (-) True G155460
TU210686 lncRNA downstream 149772 16053990 ~ 16054756 (-) True G155439
TU210771 lncRNA upstream 36569 16259819 ~ 16262030 (-) True G155500
TU210780 lncRNA upstream 56241 16279491 ~ 16280224 (-) True G155507
TU210781 lncRNA upstream 57133 16280383 ~ 16281568 (-) True G155508
TU210786 lncRNA upstream 77297 16300547 ~ 16300761 (-) True G155512
TU210807 lncRNA upstream 142752 16366002 ~ 16366852 (-) True G155532
XM_039824928.1 mRNA downstream 48461 16154128 ~ 16156067 (-) True LOC120574545
XM_039824899.1 mRNA downstream 96632 16106007 ~ 16107896 (-) True LOC120574526
XM_039824903.1 mRNA downstream 99920 16101744 ~ 16104608 (-) True LOC120574529
XM_039824872.1 mRNA downstream 105539 16095711 ~ 16098989 (-) True vac14
XM_039824886.1 mRNA downstream 111803 16089414 ~ 16092725 (-) True trim35-13
XM_039824691.1 mRNA upstream 7209 16230459 ~ 16245425 (-) True LOC120574432
XM_039824839.1 mRNA upstream 59630 16282880 ~ 16296424 (-) True LOC120574499
XM_039824884.1 mRNA upstream 117844 16341094 ~ 16344963 (-) True nr5a5
XM_039824922.1 mRNA upstream 123128 16346378 ~ 16348909 (-) True soul5
XM_039824838.1 mRNA upstream 145356 16368606 ~ 16397486 (-) True notch3
XR_005641873.1 other downstream 48461 16153787 ~ 16156067 (-) False LOC120574545
XR_005641872.1 other downstream 48461 16153787 ~ 16156067 (-) False LOC120574545
TU210689 other downstream 48501 16153851 ~ 16156027 (-) False LOC120574545
TU210688 other downstream 48501 16154181 ~ 16156027 (-) False LOC120574545
TU210517 other downstream 389159 15813058 ~ 15815369 (-) True G155323
TU210768 other upstream 7534 16230784 ~ 16259025 (-) False LOC120574432
TU210769 other upstream 7534 16230784 ~ 16245331 (-) False LOC120574432
TU210878 other upstream 346196 16569446 ~ 16642131 (-) True G155583
TU211128 other upstream 809799 17033049 ~ 17035018 (-) False polr3k
TU211291 other upstream 1192275 17415525 ~ 17415841 (-) True G155888

Expression Profile