RNA id: TU210769



Basic Information


Item Value
RNA id TU210769
length 874
RNA type TUCP
GC content 0.54
exon number 2
gene id LOC120574432
representative False

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 16230459 ~ 16259025 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGAGTCCGCTCTCGCCTTCCCCTCTCTCGCCTTCCCCTCTACTTCTTGGTTTCGGCTTGTGTCCATTTAAGTTGGGGAGGCCCTGGAGAGGACACACAATGGAGCGAAGAGCCTGTGGCAACTGGGCCGTTGTACTACTGAGAGGGGGATGGGGTAGAGAGAGGACCGGTTCACACAGCTAACACAGCCTGCCGGCTGTAGGCTTCAACAGCCTTTCCTCCCCGCCTGGACCCACTGTTTCCAGGCTGGGGCCTTTTTTGTGGATCTGCCACCCTCAAACAACGCTTGGACTACATTAAGGATTAATTACCGCGTTTTGTGGGATTTTAGGATACATACTGGAGCCTGAAGAATAATACCTCCCTGTGTTTTGGATAAGAGAAACGAAAAAACAAACTTCGGTGTAGTTCTTCTTGCCTGTTTTTGGTTTCTGTTTCAGTTTAGTGGAGTTCGTAAATGGATTACAAGATGCATGCCAAGTCAAACGATTTGCTGGATTTTCAAAAACTGGATGCCCTCCTGGAAAAAATTGCACATTCAGTCTCTGTGAAAAGagAGTCCAGCGAGGAGTGCAATGGGATCAGCGGTGCTCTGTCAGTGGAGTCTGTGCCGGGGCCAAGACTGAACTGGTGTCCTGCCAACACCACTACCCCTGCCCCTGCAGCTCCAGCTCCTGCTCCGGGGCCCGAGCCTGCGCCCAACCCTGTTAGAATGGGGGACGGCCTGGATGCAGCGCAGATGtcgggcagcagcagcagccaggggCAGGCCCAGCAAATgggcaaccccccacccccagagTACATCAATCCCAACAGGCCAAAGCGCCAGACCAATCAGCTGCAGTACCTGCTTAAGGTGGTGGTGAAGGCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU210762 lncRNA downstream 7534 16204528 ~ 16223250 (-) True G155493
TU210743 lncRNA downstream 58479 16170923 ~ 16172305 (-) True G155481
TU210724 lncRNA downstream 112292 16117119 ~ 16118492 (-) True G155462
TU210723 lncRNA downstream 115262 16115108 ~ 16115522 (-) True G155461
TU210722 lncRNA downstream 118721 16110699 ~ 16112063 (-) True G155460
TU210771 lncRNA upstream 14488 16259819 ~ 16262030 (-) True G155500
TU210780 lncRNA upstream 34160 16279491 ~ 16280224 (-) True G155507
TU210781 lncRNA upstream 35052 16280383 ~ 16281568 (-) True G155508
TU210786 lncRNA upstream 55216 16300547 ~ 16300761 (-) True G155512
TU210807 lncRNA upstream 120671 16366002 ~ 16366852 (-) True G155532
XM_039824690.1 mRNA downstream 927 16221359 ~ 16229857 (-) True brd4
XM_039824890.1 mRNA downstream 15391 16208250 ~ 16215393 (-) True lpar2a
XM_039824891.1 mRNA downstream 15451 16208250 ~ 16215333 (-) False lpar2a
XM_039824889.1 mRNA downstream 15826 16208250 ~ 16214958 (-) False lpar2a
XM_039824928.1 mRNA downstream 74717 16154128 ~ 16156067 (-) True LOC120574545
XM_039824839.1 mRNA upstream 37549 16282880 ~ 16296424 (-) True LOC120574499
XM_039824884.1 mRNA upstream 95763 16341094 ~ 16344963 (-) True nr5a5
XM_039824922.1 mRNA upstream 101047 16346378 ~ 16348909 (-) True soul5
XM_039824838.1 mRNA upstream 123275 16368606 ~ 16397486 (-) True notch3
XM_039825838.1 mRNA upstream 188292 16433623 ~ 16439841 (-) True rdh8a
XR_005641873.1 other downstream 74717 16153787 ~ 16156067 (-) False LOC120574545
XR_005641872.1 other downstream 74717 16153787 ~ 16156067 (-) False LOC120574545
TU210689 other downstream 74757 16153851 ~ 16156027 (-) False LOC120574545
TU210688 other downstream 74757 16154181 ~ 16156027 (-) False LOC120574545
TU210517 other downstream 415415 15813058 ~ 15815369 (-) True G155323
TU210878 other upstream 324115 16569446 ~ 16642131 (-) True G155583
TU211128 other upstream 787718 17033049 ~ 17035018 (-) False polr3k
TU211291 other upstream 1170194 17415525 ~ 17415841 (-) True G155888
unassigned_transcript_855 other upstream 1501255 17746586 ~ 17746657 (-) True trnat-cgu
TU211468 other upstream 1774680 18020011 ~ 18022964 (-) False psmg3

Expression Profile