RNA id: TU210976


Basic Information

Item Value
RNA id TU210976
length 2486
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G155659
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 16767433 ~ 16769938 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAACGAAAGAAAAAGTCTCACAGAAGTTTACAAGCAGGATTTTTattagcagattttttttttgatgcaTCCTCCCTCATTTACTTCatgctttctttctgctgcacCCATTCCTCAAGATCCTTCCGCAAGTGCTCAGAAGCATTAGTTTTACGGTTGGTTGCCGAGCCAATAAAGCAAAACATCAGCTGGCTGGGCGTGCCGTCATCACTTACATAATCAGGCTAAAATTATGATCACTACTGCAGACCTCATTAGTTGGcctataacattttttttttgcattacaaCTGAAATGCTTGTTACTTTTATGCCAGCAGCAGGTTAAATTTTTCCCTATTGAAAGATTACATTATTAAGAGATTACACGAAACCAGGTAATTTAAATCCTCCTGCTCTCAACCACATGCTGATTTTGCTTTTTACCAAGTTTTGAGAAGGATCTCTGAATTTAGCACAGACAATTTAAGTCTTTTTGCATCCTGGGTTTCAAGTCAAATACATATATGCAGATAGGTTAACAGGGCCACTTAACTCAAGAAACAAAGATTTGggtaaaatacagaaatatttcCATGTTAACCccccaaaaatgtcaaatatataGATATCAGAGCTAAAGTCTAAAGCTAGAGTTTCTTTAAAGGACgagttaacaacaacaacaacaacaacatgtgtTAAATAACATTTACTTGCTCACATCACACAGAGACAACCATGGCGGTACAGATGAGAAGATGGCAGTTAGAATCAAATCgatcaaaatgaaatgataatcATACAGTACAGCTGCATCTCTTGGTCCATACACAACATGAGCGGACCGCTGTGGCACCACTCTTGGTCACACCAGCTGTCAAGCATACaggcaaacaacaaaaacacaaggaGCAGCAAATTCATTCAAAACACCAGACCAGAGGCAGGTTtgattaaagaaaagaaaacaaaaaattggACTCAGGAAAATTATCAAGCTTAACTATTTACACAGCAAATAACACAGAAATGGTAAATTTTAGATGGAAGCCAGCACAGGGCAGGATGATGTCACAGAAAAACACTGTTAAGGCTCAAGTGTAGCTGCATTTCCTAGCAGAAGTCAGAGGTAATGGGTTTTCACAATCAAACTGTCAACCagataattataaaaaaagaaaaagaaaaacaaggacAGTCATGTCACTGACCAATCACCTGCCACTAGCTTCCATTAGTACCTCCCCAGACTCGAGAGAAGGCACACATCTCATGTCCACCGCCCCATACACCCACCCAACTCAACCATCAAGGTGTGGTGTTTGGTCTTAAGACATTTTAAACTTAGCAAAACATAACTCACATAAACACAGAACATATTCAACTCCTGGACATGTATGTGAGAGTAGACTTGAAAATGGCATCTTATTCGGAGGTGAGAACAGATTTGGATCGTGACCTCCCAAGTGCATCACTCAACCAGTGTAGAGAACAGACTCCGTAAACAAGTTGGAGGGTGTGAATCAACAGACAAACAACGTGGAAAAGTTAAAGGCTCAAGAAAATATGCCAGAATGGTAAAAAGCTTCACCGTCAAAATACACAGGCAGGTACATACAGCCGTCATTGGTGGATGGAAGGCTGCATGTTAACCAGTGAGGAGAGGCCTGAATGTGGAAATAGTCATACAGCAAAATATACAACCCTGTGGAAACATAAACACCCATCTCATTACACAAACTACTGAACTTTTTACATGGAATTTAGGAAGGCTATTTAAAAAGTAGAGCCTTTCAAGTAAAGCTTGTCTTGTCTTAATACTATGCAAGTCCCTTTGCCTGAAATTGTGGACAGCATCACTTTAGCGGGATGTCAAACATAAAAAGCAGCCCATTGCTGCCATTGAAAACTGGCCAAACTATCTGCAGCTCTGCTGATACACCACACTCAACacaggaattaaaaaaaaaaaaaaaaaaaaagtttaaaagaaaGTACTTCCATTTGCTAATTAACCATTTTTTTCTCACTGTACAAGTTTTTCAACGggaaataaaaagtcaaaattaaaaaaggaggaaaaagtaaaaacttaAATTACCAACACACTAaaatcatatataatatatacacacacacaaacaaaaaaataccaCCAAGAATTCCCATGGAGTGACACAACTGTCCAGATAGCAACAGGCTGCACTCCCCGGTGCCCTCCAGGGGTCACTCACAGGAGTACACAGGAGACAAATCCAAGGACCACCACGCCATAAAAGTTCATTGGAAGAGACCCAGAGGAGATGCCATTGTGTCCTGGCTGTTAAATGGCTACTCCTACAGCAAGAAGCCATTCAGCTGTAGTTAGAATATACGCTTTCGCTTAAGGTAGGAGTCTGCATAATGGCCACCAAGGCCCTGGGAGTGCTGGCCCACGTAGCTGCCCTCAGGGCTCGGCTCTGGAGATGGGATCAACCGGGAGAACACACGCTTGTGGCTACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210956 lncRNA downstream 24472 16741412 ~ 16742961 (-) True G155644
TU210945 lncRNA downstream 34262 16732341 ~ 16733171 (-) True G155637
TU210927 lncRNA downstream 42393 16704535 ~ 16725040 (-) True G155619
TU210880 lncRNA downstream 144153 16621866 ~ 16623280 (-) False angptl6
TU210807 lncRNA downstream 400581 16366002 ~ 16366852 (-) True G155532
TU211027 lncRNA upstream 64428 16834366 ~ 16836389 (-) True G155693
TU211032 lncRNA upstream 67055 16836993 ~ 16838717 (-) True G155696
TU211033 lncRNA upstream 69097 16839035 ~ 16840287 (-) True G155697
TU211077 lncRNA upstream 140336 16910274 ~ 16911079 (-) True G155722
TU211120 lncRNA upstream 197855 16967793 ~ 16968083 (-) True G155759
XM_039825886.1 mRNA downstream 90994 16657915 ~ 16676439 (-) True s1pr2
XM_039825885.1 mRNA downstream 111474 16643191 ~ 16655959 (-) False dnmt1
XM_039825884.1 mRNA downstream 111474 16643191 ~ 16655959 (-) True dnmt1
XM_039826221.1 mRNA downstream 140700 16621826 ~ 16626733 (-) False angptl6
XM_039826143.1 mRNA upstream 70494 16840432 ~ 16856848 (-) False elavl3
XM_039826146.1 mRNA upstream 70494 16840432 ~ 16856846 (-) False elavl3
XM_039826135.1 mRNA upstream 70494 16840432 ~ 16856846 (-) True elavl3
XM_039826144.1 mRNA upstream 70494 16840432 ~ 16856845 (-) False elavl3
XM_039826142.1 mRNA upstream 70494 16840432 ~ 16856843 (-) False elavl3
TU210878 other downstream 125302 16569446 ~ 16642131 (-) True G155583
TU210768 other downstream 508408 16230784 ~ 16259025 (-) False LOC120574432
TU210769 other downstream 522102 16230784 ~ 16245331 (-) False LOC120574432
TU210689 other downstream 611406 16153851 ~ 16156027 (-) False LOC120574545
TU211128 other upstream 263111 17033049 ~ 17035018 (-) False polr3k
TU211291 other upstream 645587 17415525 ~ 17415841 (-) True G155888
unassigned_transcript_855 other upstream 976648 17746586 ~ 17746657 (-) True trnat-cgu
TU211468 other upstream 1250073 18020011 ~ 18022964 (-) False psmg3
XR_005642010.1 other upstream 1582823 18352761 ~ 18352844 (-) True LOC120575519

Expression Profile