RNA id: XM_039825357.1


Basic Information

Item Value
RNA id XM_039825357.1
length 3880
RNA type mRNA
GC content 0.43
exon number 17
gene id mgrn1b
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 17012411 ~ 17023208 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGACAGCCAATCAGGTTGACTCCCTGCTACGTTAGCACAGCCCTGGCAAAAACAACAGTCCCCGTCTCAATTTGTTTCCTGTTAGCATTCGCAGCGTAGCCACTGATCAAACTGACCGtgtaaaatgttaaattaaCGAAAGCGTTTGCACTTGGTTGATGCAATCTTTGTTTTGGCGTTAGTGTACGTTTTAAGGCAGAGCTAATCGGAGCTGTGACGCGCCTTGCTAGCTTACTGTAGCTAACATCGGCGACCCAACAGAGAAAGATGGGGTCTATCCTGAGTCGCAGAATCGCTGGTGTTGAGGATATCGATATCCAGGCCAACTCGGCCTATCGATTTCCCCCGAAATCTGGTAATTATTTTGCGAGCCACTTCTTCATGGGAGGAGAGAAATTCGACACACCACATCCAGAGGGATACCTTTTTGGAGAAAACATGGACCTGAATTTTCTTGGAAATAGGCCAGTCCAGTTTCCATATGTGACGCCTGCACCCCATGAGCCTGTGAAAACCCTGAGGAGTCTGGTCAACATTAGAAAGGACTCTCTGCGTTTGGTCAGGTATAAAGATGACTCTGACAATCCGGTGGAGGAAGGTGGAAAACCAAAGGTTCAGTATAGTGTGGAGTTCACCTTTGATGCTGATGCTCGAGTGGCCATCACCCTCTACTGCCAAGCATTTGAGGAGTTTGCCAATGGGATGGCAGTGTACAGCCCAAAGAATCCATCACTGGTCTCTGAAACTGTGCATTACAAGCGAGGGGTGAGCCAACAGTTCTCCATGCCATCTTTCAAATTAGATTTCTGCGAGTGGAAAGAAGAAGATCTGAACTTTGACCTTGACCGAGGAGTGTTTCCCATGGTAATCCAAGCTGTGGTTGATGAAGGGGACGATTGCCTTGGACATGCTCACGTCCTTTTGGCAGCCTTTGAAAGAcACGTTGATGGCAGTTTCTCCGTCAAGCCTCTCAAGCAGAAGCAAATTgTGGACCGTGTGAGCTACCTCTTACAGGAGATCTATGGGATTgagaacaaaaacaaccaaGAAACAAAGCCATCTGACGATGAGAACAGCGACAACAGCAACGagtgtgttgtctgtctgtccgaCCTGCGAGATACACTCATCCTGCCCTGCAGACATCTGTGTCTCTGCAACTCCTGCGCAGACACTCTGCGTTATCAGGCCAACAATTGTCCGATCTGCAGACTGCCCTTCAGAGCCTTGCTGCAGATCAGAGCTGTGAGGAAAAAGCCTGGTGCTCTTTCCCCTGTGTCCTTCAGCCCTGTTCTGGCTCAGACTATGGACCATGACGAGCACTCTAGCACAGACTCTGTTCCTCCCGGCTTTGAACCCATCTCACTGTTAGAGGCTTTGAATGGTCTGCGGTCAGTTTCTCCTGCCATCCCATCGGCACCCCTCTACGATGAAATCAACTTCTCAGGGGGTGTGGGCGGTGACAGCAGACAGCTGAGCTCCCCAGAGCATTTAAGTGATGGGAGTCTGCAGAAAGGCAAAGTCAGCAAGTCACCTGACAGTACCCTTAGGTCTCCATCGTCTCCCATCCAGGAAGAAGATGAGGAGAAGCTGTCTGAGATGTCTGATGCTCAGCCTCACACACTGCTGTccagcagccccgcccccacTGACgCCACAGCAACCGAGGACGTGGCAGAATCCTTGTCTCCAGATGACGAGGACAGGATGCATTCTGGAGGAGACATCCTACAGGACTGCAGCAGTGAACACAGCAGCTTGACCAAAACAGAGAGCGACCCACCGGGCGACTTGTCTCTCCCAGCTCTTGGTCCTGATTCCTGCTCTATTGGTATGGAGGAATAACTGTGGTTCATCAGAATCAACAGAAAGCCTGAAAAGTCAGAGCACAAACTGCTCCAGCCAGCCTCTCCTGTGTCCCACGAGCAGCCTTCATATGGAAGACGAGCACCTCAACCCCTGACTCTGATCCAGCGTTTTCCATCCCATCCCATCCATCAGGACAGATTTTTTTGTTACAAAGATCATCCAGTCCCGCTATTCCTTTTACCCTCCAGCCCAGTCTTCTGCTTCAGTGATCAGAGCCAATGATGGCTCTTAAAGGAAGTACACCAGGATAAGGGAGGACTCTGTTTATTCCATCAATGTCTCTGAAATTAGAAAAGAAAATTGACTCCTGCAAAGATGTTCTTGGTACCTTACTCTATGACtgatgtttaacccttgtgttgtcttcccttcAACCttgaaaacacttttttccaacgtttttttccgttttttttttttgctttttccatcgttttaaattgttaaatttttcttctacacattttcagcgcttatttctatgtcccatattttctgatataaaacaaaaattgaaaacgggtcaatgtgacccgaagtcaactcAAGGGTTAAAAAATCATATATTGTTTTCCCAGCTTTGAAGACATTTCATTAACTGTCAGATGGTGTTCAGTTGTGTCTTGGCCAGAGTTGTGGTCTAGTAATATGGATTCCAGAGATATTTTACTACCTGTCGTGGTGGTTTTAAGCACACTTATTTTAAATTAACTCTCTATCAATTGCTTAACACTAAATTCAGAAGAATTTATAAATACAGTTTGTGTCTAGATATTGTATTCATCTGTGAAATACATTAATGActtgaaaacatatttttacagTAAGGTTGATTTGGGTTATGAGCAGAAATTTGAAAACATATTACATATCTGTATGTCTATTTGAAGTGATTTTGCACTCAAATCGTTTATAATCCATTCCTTATAACAATAGTTTATGATGAGATTAAGTTGTCTGCAGTCTTAAACATCtacatgtcacttttttttaattatttctaaCGATGTGATATCTATGTATCATAACTGTACTAGAATACTGTGTAGTTACTTTCAAAATTGTATACTTGCATATTACATAAAAAAGATCCTGATATTAAAATAATGAATTCATTTAACATGCACATTATTTAAGACTTGGATAATCGATAAGAGCTACCTATTCACGTCCTTACAGCTAAACTCAAAGATAGCTAAAGCCTGCAACAAGCATAGACGCTCCAGCTACATGTATGGTGACTCAGTATGGCACAGTAAGTGTGCCTGTCGTAGATGTGGCAGATATCTTTACAGTCTTTTTGTGGCAATGCCAGTGTCTGCTTATGTTATGTAGCTGCAAAAAAAAGGGGGTCCGGTGTTTGCGTGGCTGTAACATCTTTACATAACTTGGTCCTGTATGTGTAGCGCCATGCATATAGATCTCTGTGCCTTGAATTAATATGGCTGCCTGCTTGTTGCATTGGACATTAGTGTTCTTATAAATGCTACAATATACAACACTTTTCAGCGCATAGACAGGATATTTGATTCTGATGTACAAAGCCTTTTTTTATATCATGCTACTGGAAAAATGTATCTTGTCATTGTTATTGCAATATAAAATCGAACTGTTCGTTTACTATGTTATGACCATGTATCCATTATGCATTTAATCTGAGGTTCAAGCAGATTCTCTTAATGTATGTTTGATTGGAAGGATGACATCCAATGGAATTACAAtgcaaacattgcattttaaaaattgggCTAGCATTTGCATGTGAATTTGTAGATGCTTGAACCTCACTGCTTTTAAGCGACATTGTTATTTTGTATTTCCCCCCTCCTCTTCTGTGCCATTTCAACTTGACACTGTGCCTTCCTGATCCTGTTCTGACTACTGTTGACCTGGTATCCAGGATAACTCCACAGTAGGTGGTTTGTGGCTCTCTGTAAAATCAATACCTGTCTTTCCTTGTGTGTATAGCAGCATGTGTGTAACAATAAAGAACAAAGATCCAGTACTTCAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10604 MGRN1; E3 ubiquitin-protein ligase MGRN1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211120 lncRNA downstream 44328 16967793 ~ 16968083 (-) True G155759
TU211077 lncRNA downstream 101332 16910274 ~ 16911079 (-) True G155722
TU211033 lncRNA downstream 172124 16839035 ~ 16840287 (-) True G155697
TU211032 lncRNA downstream 173694 16836993 ~ 16838717 (-) True G155696
TU211027 lncRNA downstream 176022 16834366 ~ 16836389 (-) True G155693
TU211140 lncRNA upstream 13970 17037178 ~ 17037710 (-) True G155775
TU211184 lncRNA upstream 94064 17117272 ~ 17117596 (-) True G155796
TU211187 lncRNA upstream 100982 17124190 ~ 17124481 (-) True G155799
TU211210 lncRNA upstream 113611 17136819 ~ 17137082 (-) True G155820
TU211218 lncRNA upstream 115302 17138510 ~ 17138824 (-) True G155825
XM_039823848.1 mRNA downstream 6867 17004147 ~ 17005544 (-) True aanat2
XM_039823705.1 mRNA downstream 48445 16961440 ~ 16963966 (-) True mpg
XM_039824188.1 mRNA downstream 72221 16939320 ~ 16940190 (-) True LOC120574104
XM_039824191.1 mRNA downstream 76801 16929103 ~ 16935610 (-) True LOC120574105
XM_039825115.1 mRNA upstream 9777 17032985 ~ 17035040 (-) True polr3k
XM_039824966.1 mRNA upstream 19240 17042448 ~ 17087280 (-) False mrtfbb
XM_039824967.1 mRNA upstream 19240 17042448 ~ 17056607 (-) False mrtfbb
XM_039824965.1 mRNA upstream 19240 17042448 ~ 17056607 (-) True mrtfbb
XM_039824964.1 mRNA upstream 19240 17042448 ~ 17056490 (-) False mrtfbb
TU210878 other downstream 370280 16569446 ~ 16642131 (-) True G155583
TU210768 other downstream 753386 16230784 ~ 16259025 (-) False LOC120574432
TU210769 other downstream 767080 16230784 ~ 16245331 (-) False LOC120574432
TU210689 other downstream 856384 16153851 ~ 16156027 (-) False LOC120574545
TU211128 other upstream 9841 17033049 ~ 17035018 (-) False polr3k
TU211291 other upstream 392317 17415525 ~ 17415841 (-) True G155888
unassigned_transcript_855 other upstream 723378 17746586 ~ 17746657 (-) True trnat-cgu
TU211468 other upstream 996803 18020011 ~ 18022964 (-) False psmg3
XR_005642010.1 other upstream 1329553 18352761 ~ 18352844 (-) True LOC120575519

Expression Profile