RNA id: TU212204


Basic Information

Item Value
RNA id TU212204
length 5584
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G156562
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 19932662 ~ 19941892 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttttattaGTCCTGGAAAACATGTAAGGCATATGGTAACATTACACACTGAAGCGTTACAAGCTCTAGAGGCCATGTGGACAACATGGCACCACGCAGTAAACCCAGAGTCAAGCACAGAAGCAGCATCAATTCAaagggtttaaaaaacaaagccGAGAAGAGTGTTTgcaaccaggaaaaaaaacaacaacaacacaaggaAGGACAAAGAAGAGGAGAACTAGCTTTGAAATCAACCTGTTGGGTATGCCTTGTAGAAAATGGCCAGTGGTGACTGAATTCCAACAGGTGGTGTGTAGTGGGGATGGATGTGAAGTGAGTTTCTGAAACATTCCCAGAGATAGGTTAAGGTGTATCATGAATGAACCAGCTGGCCATGACAGTGCCCATGCTGAGGGTGAGGACAGGGAgtcagggagcggtggattggCTTCAGTTGGCAACGTGATACAACTGGAAGGGCATTCTCCTTCTTCACACCACGCCACTACACGACGACTAAACTATCGTGGAAAGAGACGGTGAgctgtacacaaacacatgccTTATTTTCTAGTTCTCTCGAATACACATGCATCCTAGTACTGTACATGACAAACCCAGCCAGGTTGTACTTCCATAGCATCTCTGCAATGTTGCTGTGATGTAAAAAATGACTGCTAAGGAAACAATAGCTGCAGGCAGATGTGGTTGTTGTTTGGGTTCTCGGTGTGGATGAGTGAACACAGTTGCTCTGAATTTGGAAATAACCCAATGACAGAGCATCACCTTTTGACTCGGAATACTAAAGCTTACATCGAACATGGATGGTGTGACAGATGGTTTGTGCAGTGAACTCGGTGAAACAGACggacgttgtgtgtgtgtgtgtgttaggaaaCGCAAAATTAGGTTGGCTTCTTACATGAAGTAAACTGCTGTTTGGAATGACCTGAGAAACcatataaaacaaagaaattcaCCTCAAAGCTGAACGGTGGGTGCCTGTGAGAGACTTCAGCTATACAAGccaagacagacagaagagtAGCTATTGGAAATACTACACTCATTGTCTTAGTGCATTTTTCAAACCCAAAACTACAAGTGTTAATTAGTAATATCAAATCTAAAACTACTCAGAAAATTACCgctttgtttatttttactttgaaacactgtttttctcctgtgcatCTCTGAGTTGCTAAGTACTCTTGCATACGTGTCTGGAATGACTGGGAAACCATTTCAAGATGACATTACACTGCAGCTTCACCATGGTGGAAGTGTGCTCAGGCAGCAGGCCAACCGCCCAACTGATTGAGTTCATCTCAAAGGCATCTTAGCTCAAAAGAACCAAGGGGAAaatgtgaaagaaagaaagagatcaTAATCGGTTTTCCACATGCCAATAACTGCATGCAACTTCAAATTCCAGATGTCAAACTAATGTTTTATTTGCTATAAATGCGtatggagagagaaggggggcgATATGGAGCAGAATTTTGGGCCGCCACTAGTTGCACCGGCCAAGAGGCTCTGCAGATGCAGCACAGGAAAAGAGGAACGTCTCTAATAATCCTTGAGTGAACTGAGATCAGCAGTAAAGCGGAAATGTTGTGTCTGGGGTAGGCCAGAGCTGAGCTATGATCAGCCAATAAGCTGGGGTTTTGTGCAGCTGTGTTACAGTATTGGCATCCCTGCACAGCTGTGTGAAAACATCTGCTCCCTCACTTGCTATACAAGCCATTTGGAAATAAACTGAAAGAAATAGAAATCCATAGAGAGGAATACGGTGGAGCTATGGATTTTGAGGAAATTTGCAGATTTCTGTGAATCTATGTCTTTTGGTGGAGTATTGAACCTTAAATGCACAATGTCCAGTCCCTTTTCACTGTGATACTAATAGTATGGTTGTAAACACTTCAACCTGTTGTGGTCGACATGATGTGAAAGCTGGTAAAACACAGCGAGAAGGGTATGAATATGGAGGGAGGTGCCTCGGATTGAGGTAAGCTGTGTGCAAGGAGAGAGGCACAGTGCAGGCCTACACTTGAGCAAGACTGAAACCAATCAAAAAATTGTGTTAAACCTTTTGTAAACTGCAGCAAAATTTCTGTCAGCACCCATAAGCATTTTGGGATACAAATCTGACACACTATGAAAACTCTTATATTTTCACTATTCTTCAAGATTGATGGAAATGCATCCAAAAACAGAACTGTCTTCATATTTTTTATGCACTGTTAATATTCAAAGCATTGACAGAGGAATATACATACAATTTGGCACACATGGTTCAGACCAACAGAAAGACTTcatcacatttaaaaaggaGTGCAGGTTGGCAGGTCCCcacaaaaaaagtatgaactttGAACTTTAAACCCTTGGAtaacaaaacagacaaacaaacggAAATATAAAGGTaaattaaaataacattaagTAAAACatcctctttttttgtttttactgaagCGCTTGTGTCTCACATGGCACTCGGAACAGAAGCACCGTCCACAGGTTCACAAAGGGAGCCCAGCAGATTAGAACAGAACACTAACCAGAGGCTGACAGGACACAGTCACTCCCCACACCAGCGTAGCGGTCGTACTCCAGCCCAGTTCACTCCGCCCTGCTCCACATTTTACTTCACACAGTCAAGGATGGATGAATGCTTTGATTTTAGCTGCCACCCAGGAGAAGTTGGCCTGGGCAGGGACTGGCAAGCTGAAAATGAGGGGACCTTTAcatgagggagtgtgtgtgtgtgtgtgtgtgtacgtgcctgcgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccacctGTGCTTTCAGTGAGCTTCAGCAGATACACTGGGAATGGATGATGGGAAACAGACTGCAAACCTGGAGCAGAATCAAAGCCTGCGTGGGACTAGAGTGCGACTGCCATGCCTGTAAGTGCAATAAGATCAGCGAGCAGAGTGCAAAAATACTAATACCAACTGTCCTCATAACACAGGCCTCTTATCAGACAGGAGGGAGAGATAGAGTAAGAGGGGAGGGTTGTAGCTACATAATACTGTAGCAGAGTAGTGTGAGGGGGAAATGTGGCATGGGTAGGGTGGGTGCTTTTAAAACCTGACAAATGacctgaggacacacacacatcttcacaCACAAtggcacaccacacacagcacATGAGGGAGGCCActcatgctaacacaacaactttttttttttttttttttctccaaacattttgttttgtgttttttacaaAGTCACTAGTCACCACCTGAGTCTCAACGCTGAGGCCAggctcacagacagacagacaggcaggcaggcaggcagccaGGTAGATCAAAGTTTCAAAGTTGATATCCTCCTACATGAAATATTTAGAGTCCACCCAGTGGGATTTATGCTAAAATGCTAAGGATTTACTCCAATGACATTACACCAGTGAGACAAAATTCATACTGGCCATTAGGGGGAGCGGTGCGCTGTTTTTGCCAGCACACTGCTAATTGCACACATTGTCAATACTCGGTTTAAATTTCACTGGTTGGTAGTGCAATACTAACAACCTAGAGAACTGCTCCACCTCTTCATCTTTATCATCTGAAATCCTTAATACATTTTACACCTGTTGGAATACTGGTCGACAGCACCGACTGTTGGCAAATATAGAGTTAGGGAGGCAGAAAAGAGAGACACAGGAAGAGGGAGTCAGAGTAACAGACCACAGTGCCTCCTCTGACGAGCCTGACGCCTGTTGCTATGCCGACCATAGAAAGGGAAATggaaagaggagggagagagagtgtagAGTAGAGACAAGCGGGGGCGAGGTATGGACGCCAACTTAAATTGAATTCTCCTCTCACAGGTCAGGGTGATCGACAGGCGAGCGGCTGCTGTGAAAGCAGCAGAATGCCATGGAATGCCTGGAGGGGGATCAGGGAGGAAGAAAGCCTGATCCTGAAGGAAAAAGGACTGATAGTCACCTTCTTAACTGGCTCATTTCAGACGCTTCACTGTCTCAGCATGACAGTGCCTCTTTCATCTCAttcagagtgtgtatgtgtgtgtatttgtggctTGTTTAACAGAAACAAATTCTCTCTTAATTGGCACTGCGAACTTCTTGCCAACAGTTGGTCAGCTAGAAAAATCTGTAACTAAGGAGAAGGAAGCTGAGCAATGATTTCTGCCCCCCTATTCAACACTGCACAGAAAGGCTCATTATGAGGACAATTCATATTCAGGCAAGTGCAAAACTGTAGTCACTACATTAACTTCACTGAAATTGGATTGGAACGCATGCATTATGGAGCAGTCTCATTCTACACTGAATTCTACAAGAAATATCGAAGCTaaggccatatatatatatatatatatatgataaccAAGGTTAGGCCTTCTAGCACTAACACCATTGTCTGAGCAATCAAACATCATGATCAAAACCACGATGCAAATATCTCCAGGGGTgcatcagccaatcacaggcaTCTCTGACTCATCCTCAGTGACATAACTAAGCGTTGGACACTAGAAGAGCAACGTGTGGGTGGGTGCGGTTCTCCGTTTATCTGCCTGCCTTTGTGCCTGTCTGTGGGTCCGGCCTGTGGATAGGTTGGgggcggtggtggtggtgtgggaCTTGGGGGTTGGGGGGCGAAGAGAGACTCAGCACAGTGAGGGGGGAAGAGGAGGTGGCAGGTGGAAGTCAGAGCAGAACAATTTAGCACAGTGGGAGTTGAGGTGTGGAGGGGCATGGGGGTCGAGGGTGGGGCCGGAGCGCGAGCAGGGATTACGGTTGTCAAGGAAACAGTAATTTGCCCCAGGCCTGGACCATACCCACAATCCTCCACGGCTCTTGTCTCTCGTCATCTTTCGGATGTTGCGGCTGCCTTCTCAATCTTGTGAGGCAGAGAGATAGGTTGCGGTGCTTACAAGGTGTTACAAGTGATtggacatttttttcttctttttttttaatagataaATGCAAGAATACAGGATGGGAAGGGGGTGGGTGGAGCCAGGCCTGAGTAATCACTGCCATTGTGGAGTCGAGAGGGTGAGGCGGAGGGGAGGTGGACGAGATGAACGACTGACACTGGTGTGATCATTTTGTAATCTACCCTTCTAACTCCTTCCAATCCTTTCTTACATTCCACCCCACCTTCCCACCCCATCCATCTCCTTCTtcatcccccctccccccctcccccccttgcTCCCAGGACACAAACTCCCTGCTGCTCTGCTTGACTATCCGTCCCTCCCTCTCACTTCTCCTCCTTGTTGGGCtcttccttcttctcctcctccttcttgggctcctctttcttcttgtcgtccttcttctcctccttcttgcCATCGTCCTTCTTCTTGTCATCCTTCTTCTTGTCCTCCTTCTTCTTGTCCTCCTTCTTGGGctcctccttcttctcttcctcgGGCATTGGCTCTGTGTTGAGGATCACTTTGCCGATGTTGTTCCTCTCCTGCATCTTTCTCATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212131 lncRNA downstream 208905 19666930 ~ 19727372 (-) True G156504
TU212139 lncRNA downstream 226969 19707030 ~ 19709308 (-) True G156510
TU212067 lncRNA downstream 367777 19568276 ~ 19568500 (-) True G156466
TU212024 lncRNA downstream 412286 19432371 ~ 19523991 (-) True G156430
TU212042 lncRNA downstream 457352 19478509 ~ 19478925 (-) True G156446
TU212210 lncRNA upstream 8499 19950391 ~ 19952982 (-) True G156567
TU212254 lncRNA upstream 27040 19968932 ~ 19972503 (-) True G156595
TU212314 lncRNA upstream 231606 20173498 ~ 20174463 (-) True G156631
TU212318 lncRNA upstream 245244 20187136 ~ 20187694 (-) True G156635
TU212331 lncRNA upstream 261619 20203511 ~ 20214927 (-) True G156645
XM_039823888.1 mRNA downstream 35752 19867061 ~ 19900525 (-) True rnd2
XM_039824016.1 mRNA downstream 187296 19747311 ~ 19748981 (-) True rprml
XM_039824015.1 mRNA downstream 192775 19731367 ~ 19743502 (-) True LOC120574025
XM_039823648.1 mRNA downstream 263335 19668447 ~ 19672942 (-) False LOC120573806
XM_039823886.1 mRNA upstream 75 19941967 ~ 19947921 (-) False si:busm1-163l24.3
XM_039823885.1 mRNA upstream 75 19941967 ~ 19947921 (-) True si:busm1-163l24.3
XM_039825965.1 mRNA upstream 105265 20047157 ~ 20079017 (-) True LOC120575253
XM_039825982.1 mRNA upstream 160148 20102040 ~ 20113445 (-) True st8sia6
XM_039825826.1 mRNA upstream 180544 20122436 ~ 20125969 (-) True rpl19
TU211982 other downstream 685021 19249726 ~ 19251256 (-) True G156396
TU211888 other downstream 815345 19108899 ~ 19120932 (-) True G156321
XR_005642008.1 other downstream 1582112 18354082 ~ 18354165 (-) True LOC120575517
XR_005642009.1 other downstream 1582831 18353363 ~ 18353446 (-) True LOC120575518
XR_005642010.1 other downstream 1583433 18352761 ~ 18352844 (-) True LOC120575519
TU212205 other upstream 3696 19945588 ~ 19947890 (-) False si:busm1-163l24.3
TU212206 other upstream 3696 19945588 ~ 19947890 (-) False si:busm1-163l24.3
unassigned_transcript_859 other upstream 78325 20020217 ~ 20020288 (-) True trnac-gca_26
unassigned_transcript_860 other upstream 229395 20171287 ~ 20171358 (-) True trnac-gca_27
TU212545 other upstream 1127134 21069026 ~ 21071488 (-) False atxn7l3a

Expression Profile