RNA id: TU212210


Basic Information

Item Value
RNA id TU212210
length 2442
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G156567
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 19950391 ~ 19952982 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAGAAAGACAATTTTATTGTTGCTTTGAGCCATTTCTGGAAAATGGGGCGTACACTTCCTCCACACAAACTAAAGACACAGCGAGGACTGTAAAGAATGAAGGATCATCCCCTACTATATGACAGGCACATTCCAATTGATTGGGAGGGGCAATATTATTCATGAAGAAATCATTTGCTAGAAAGCAAATATATTCCAGAGATTTAATCCTTCTGGCAAATCAAAGCACAAAGAATTAAAGTCAAATAAATACACCATCTCTAGTCATTTATGTCAGTGAATCAAAAGGAGAGCCTTTCATTACAGATCTGAATATACGTAGTTACACAATTTGAGGAAACGTTCCGGAACATACAACAGAGTAATGGCATTCATCATTTACTTTCATCATCTCatcttttaaaggaatagtgtgctttccacacatgcagtGCTCTGAAACAATGTAGCAAAGACTAATCTTGAGAATTTACTGCATTGtcaatttttatatatatatataggttacCCTACACATCCTTACACATGGTTGGACTTTATAAATGCATCCATCACAGacctctcactctgtctcccaACATCCTGCTGTTAGCAGAGCCCAGTCCAGAGTTGGTTAGAGAAAGAGTGGGAGAAATGTGTGTGAAGTTGAATGTCCTTTATTAAATCCTCCAACCACCCCTTCCATGGCCCTTATAACAGCTGGTGACAGCGAGAGTGGGCTACACATGAGATGTTATCACTGGGGCAACTGGATCAATGTGCGCTGTCCTGATGGCAGGTAAGTGACATTACGGGAGCGGGAGAGTTGGAAAGCGATGTCCTCCGCTGCCTCCAGCTTACGTAGCTCTACCAGACCATCACCAGCCTCCATCAGGGAGTTGGCGATGAGCAAGGCAGCCTGGGAATCTCCTTCTGCTGAGATGATGGTCGCCTGCTTCTGTTGCTCTGCctTTTCGACAATGAAACGGGCCCTCTCAGCCTCCTGCTGGGCCACCTGCTTCATCTCAACAGCCTCTGTGAATTCTTTGCCAAAGGTCAAGTGTGTCTGAAGGAACACAATACAATTATTTCTCCAAGttaatatccaactaaaaagaTAACATGGACAACGTTGTAAAATTTGCCAGCAGCTTCATACCAGTGAAACGTCATCCAAGATGAGACCAAAGGTGTTGGCTCTCTCTGTGAGGTCCTCACTGACCTGCCGAGACACAAGCTCTCTCTGGGTGATGAGCTCACCAGCATCGAACCGAGcctgtggaaaaaaataaaaataaataaataaataaaagacagtgGAAGAGTCAGTTTTTTGACTTCTCTTATAACAAGAACGGTCATCTGTTTATTTGTAATTACTCGACTCATACTCACCACTACAGACTTCAAGACCTCTGTGGTGATGGATGGCAGCACCCTCTCATCATAGTCCTCACCAATACTGGTGAAGATGCGTGGCAGCTGGGTGGTTACCGGCCGGAAGAGGATACGCAATGTGATGTTTACATTCTGCAGatctgtggggggggggcaatgaTTAAAGTGTAACTCTTACTGCACATATTAGCCTACAAGTGAAAGTGACAAGTGAATTTTGTGTGCAGTACAAGTTATATTCTTAGGTAATTTTTGCACAGCTTGTAGACCTAACGTTAACATATAGAATTGCTACATTAGGTAGCATTAGATGTAAGCCTTGCCAGTATATTTTTGTCCTTAATAGCATTTCCAATAGGCTAGTTGTATGATGCATCAGAGAACCCATTCAGACTACTGTTTTTTAAGAGACAGAATGTTTATCAACAAAAAGTGAGGACAATATTACAGCGGTTTAGTAGATAATTGATGTACCTTTGCTGCCTGTGATGACAGGCACGTTGCGTGGACGGGAGCGACAATCAAAGATTATAGGTTTCTGAACCCAGGGAATGAGAAAGTGGGTCCCTTCACCAACAACATCATCTTGCACACCTCTGAACCGGTCAAATATCACAGCCCGGTGCCCTGCATCAACTGTAGAAAAGAGTATAGTGAGTCTCTCTGCCAAGAGGTTTGTGTACACAGCATACAGGTTTTTATAGCAGTATAGTTTATAGCTCTACAACTGTCAAATGTtttgctgattttttttctttaaccagGGCAGTGTTTTCCTAACCTTTGACATCAAACCATTTGTTTAAATCATACAAATTATATTGCTGAAGAGCtacacattattacattactATTATCGGGTTTATTAGACATATTTTAGGAAATACATTCATCATGCATTTGACAACACACAAGCAGTAAGAAACGAACAGCAAATACAAAAGACACAAGCTTTAGAGAAACACTGGTCGTGTTACAACACAATAGAAGTTTCCAGGAAAAAACACGCTAgatgaatattaaaataatatcaGAATCACGTAAACGGACTTTAAAAACCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212204 lncRNA downstream 8499 19936277 ~ 19941892 (-) True G156562
TU212200 lncRNA downstream 13835 19932662 ~ 19936556 (-) False G156562
TU212131 lncRNA downstream 223019 19666930 ~ 19727372 (-) True G156504
TU212139 lncRNA downstream 241083 19707030 ~ 19709308 (-) True G156510
TU212067 lncRNA downstream 381891 19568276 ~ 19568500 (-) True G156466
TU212254 lncRNA upstream 15950 19968932 ~ 19972503 (-) True G156595
TU212314 lncRNA upstream 220516 20173498 ~ 20174463 (-) True G156631
TU212318 lncRNA upstream 234154 20187136 ~ 20187694 (-) True G156635
TU212331 lncRNA upstream 250529 20203511 ~ 20214927 (-) True G156645
TU212344 lncRNA upstream 289273 20242255 ~ 20242586 (-) True G156658
XM_039823886.1 mRNA downstream 2470 19941967 ~ 19947921 (-) False si:busm1-163l24.3
XM_039823885.1 mRNA downstream 2470 19941967 ~ 19947921 (-) True si:busm1-163l24.3
XM_039823888.1 mRNA downstream 49866 19867061 ~ 19900525 (-) True rnd2
XM_039824016.1 mRNA downstream 201410 19747311 ~ 19748981 (-) True rprml
XM_039824015.1 mRNA downstream 206889 19731367 ~ 19743502 (-) True LOC120574025
XM_039825965.1 mRNA upstream 94175 20047157 ~ 20079017 (-) True LOC120575253
XM_039825982.1 mRNA upstream 149058 20102040 ~ 20113445 (-) True st8sia6
XM_039825826.1 mRNA upstream 169454 20122436 ~ 20125969 (-) True rpl19
XM_039824001.1 mRNA upstream 346042 20299024 ~ 20300946 (-) True hexim1
XM_039824781.1 mRNA upstream 425119 20378101 ~ 20384616 (-) True tmem98
TU212205 other downstream 2501 19945588 ~ 19947890 (-) False si:busm1-163l24.3
TU212206 other downstream 2501 19945588 ~ 19947890 (-) False si:busm1-163l24.3
TU211982 other downstream 699135 19249726 ~ 19251256 (-) True G156396
TU211888 other downstream 829459 19108899 ~ 19120932 (-) True G156321
XR_005642008.1 other downstream 1596226 18354082 ~ 18354165 (-) True LOC120575517
unassigned_transcript_859 other upstream 67235 20020217 ~ 20020288 (-) True trnac-gca_26
unassigned_transcript_860 other upstream 218305 20171287 ~ 20171358 (-) True trnac-gca_27
TU212545 other upstream 1116044 21069026 ~ 21071488 (-) False atxn7l3a
TU212733 other upstream 1510240 21463222 ~ 21465073 (-) False ndufa4a
unassigned_transcript_864 other upstream 1651383 21604365 ~ 21604436 (-) True trnac-gca_31

Expression Profile