RNA id: TU212889


Basic Information

Item Value
RNA id TU212889
length 1774
RNA type TUCP
GC content 0.41
exon number 4
gene id G157096
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 21734382 ~ 21740703 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAAAAACagttgttttaatgttaaatcaGTTAGAAGTGCAACTTTGATCATGTTTAACAGCCTCAATTTGCAAATGTTAATGTCAACTATTTCATTCAACACCCCCAGGTCAGAATATACTTTCCTGTTGTAACTAATGGAGGGTTTAAGTTTTTGAATTTCTAGATCATGAGACCTAGTGTTATACTTTAGTTTGACGTGCAGAGGAGTTCATTTCTAATTCACCTTTTAATTTCAGGAAAACAATGTATTAACAGGATATAATACAACACAAGTTGCAGAATGAACTCAACCAAAATGGGCAGTGATTTTGGACAAtggagagttaaaaaaaaatgtgcagcCCACTACTCACAGGCACGGTTCATAACTTAATACATGACATACAGTTTAGGTTTACTAGAAACTATTAGCCCCACTGATTCAAGTCAAGATCTCATCAACATCTCCAAGATGTCATTGGCTACAATCAAACACTGGAGAGGAAAGTTGGCTTGTCCCCACCTTTGTtagtaatgtaaaaaataatcaataatcactattaatacatttttgattgCTGCTCTGCCTGTCGGACATTAACTTTCAACACCAGGTCCACGCCAGCGTTACATGTGTTGTAGATACCCACAACTGAGCACATTCAGTCTCAGTAACTTCTGTGAGCAGCTACAGTAGGAAAACTACAACTACTGCTAGGTCAAGTACCAAGAAATGTTCATCTTAATGCCAGATCTCCTGCCAACAAGTGAATCTATTTTATTTCAGATTCATATTGTTCAAAAGTTTTTGAAATACAGATAGTAACTTAGAAATTCACAAACTCCTAGCTATTGTCGCAACACATATCCAGGCCAAAgaccaaaaacatgttaaatccTAGTAATAGTTtaataaagaaacacacaaacataaaagccTAAAAATGTCACACCTTATCGACTCCCACGTTTAAGCcaagcaaaataaaaaacaagtaaGGCAGCAATAACCTTACCCTAAATAAAGACTAGAATTAATTAAATACGAGGTACAATTTTTCATGTTCAGCCGTTACCAATCCCATGGCTGACTGACAGTGTTGTGACAAGTCCGTCAGGTATCTCTGAAGGGTCTTGTGTGAAATTTTTAATTTATCTAGCATGCGTTCACTGATTTCAGGACAAATGAACCACTCTGAAGCACCCGCCCTCACATTTACAACAAGGAGAGTACATGTTTGTAATTGTTTGTACCCAGCTGAAGATCTGTCCTCGGCAAGGTAAAACTCCACCACGGAGGCATCACTTCCCAAATTTtaacccctccctccccccgtGCATCCTCCCTCTGACCCGCTGTGCGTCCCTCTCGTTTCCCTGCCCCCTCCCTCACTGTACAGCCTGCTCGTTGGCTGTGCTGCCCGAGTCCTGGGGCTTCATGACGTCAGGGAGCTCTGGGGGAGTGGAGAAAGGCTCGACCCTCAGCTGCTCAAATGAATCATCTGAGAGAATGACAGAAAGTGAAACACTCAGGCGGAAGGATAATCCCACTGTGGCTGGGGCCTGAGGTCGGGCTGTTTGATTTGTAAAGCCACAATTTCCGAGAGTTTGACCGTCATTAAGCATCACATCATCCTTGTAAAGTCTCTGATCTTCAGGTGGTCTCTTTAAAATGCCTTCAACAATGCGCTTCAGTTCATAGACTGTGGTAGACTCTTTGGCATCTGTGAAGATGGTTGTCTTGTGACGTCGGATCATTAGAAACACATCCATTTCTTGCGGTTGGTtgcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212884 lncRNA downstream 4971 21727195 ~ 21729411 (-) True G157092
XR_005641861.1 lncRNA downstream 15653 21715014 ~ 21718729 (-) False LOC120574354
TU212879 lncRNA downstream 15686 21715045 ~ 21718696 (-) True LOC120574354
TU212871 lncRNA downstream 35593 21694931 ~ 21698789 (-) True G157081
TU212860 lncRNA downstream 66984 21665450 ~ 21667398 (-) True G157075
TU212942 lncRNA upstream 80919 21821622 ~ 21831111 (-) True G157135
TU212952 lncRNA upstream 98887 21839590 ~ 21840057 (-) True G157144
TU212953 lncRNA upstream 101403 21842106 ~ 21842378 (-) True G157145
TU212954 lncRNA upstream 105653 21846356 ~ 21846723 (-) True G157146
TU212974 lncRNA upstream 187269 21927972 ~ 21932946 (-) True G157161
XM_039825056.1 mRNA downstream 39580 21690695 ~ 21694802 (-) True pheta2
XM_039825055.1 mRNA downstream 39604 21690695 ~ 21694778 (-) False pheta2
XM_039825057.1 mRNA downstream 48694 21680872 ~ 21685688 (-) True mylpfa
XM_039823866.1 mRNA downstream 119279 21610676 ~ 21615103 (-) True dcaf7
XM_039824979.1 mRNA downstream 220984 21501199 ~ 21513398 (-) False strada
XM_039825725.1 mRNA upstream 3383 21744086 ~ 21746426 (-) True si:dkey-66i24.7
XM_039825726.1 mRNA upstream 14038 21754741 ~ 21756191 (-) True LOC120575106
XM_039825734.1 mRNA upstream 37944 21778647 ~ 21785262 (-) True LOC120575109
XM_039825735.1 mRNA upstream 45503 21786206 ~ 21789638 (-) True LOC120575110
XM_039825737.1 mRNA upstream 45503 21786206 ~ 21789632 (-) False LOC120575110
TU212878 other downstream 15686 21715045 ~ 21718696 (-) False LOC120574354
TU212812 other downstream 111421 21621030 ~ 21622961 (-) True G157034
unassigned_transcript_864 other downstream 129946 21604365 ~ 21604436 (-) True trnac-gca_31
TU212733 other downstream 269309 21463222 ~ 21465073 (-) False ndufa4a
TU212545 other downstream 662894 21069026 ~ 21071488 (-) False atxn7l3a
TU212895 other upstream 14063 21754766 ~ 21756188 (-) False LOC120575106
TU212956 other upstream 108392 21849095 ~ 21856016 (-) True G157147
TU212955 other upstream 108477 21849180 ~ 21856016 (-) False G157147
XR_005642007.1 other upstream 203662 21944365 ~ 21944454 (-) True LOC120575516
XR_005642005.1 other upstream 203905 21944608 ~ 21944699 (-) True LOC120575514

Expression Profile