RNA id: XM_039823648.1


Basic Information

Item Value
RNA id XM_039823648.1
length 2865
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120573806
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 19668447 ~ 19673683 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaatgtcatacatGGATATACAAAGCAATTTCTTGTTTATCGTTTTATTAGATTTCCGTATGAGCGCGCTTGCAGAAATTCCTCCTCACTCCCCCGCTCTCCCCCTACGTGCCCTTCAACTTTTGACATCATATCTACCTGGATTATAAAAGCTAAGATCAAATACCACGCTCGAGTCAAAAGGCAAGAGTCTCCCGGTCCCGATTTCCCTCCTCCAGGATCATTTACATAGAACAGTCCTGAGGCTTGGAGTAGCCCCTTACAGCATCGCGCAGGCTGCAAATAGATCATATCGGACCCTAATTTGATTTAGAGATTACTGCGTCTGAACTCTGAATCAGAGAAACAAAAGACAACGAGTatgcaagataaaaaaaaaaaatctgtggaaTATTTTGACATCAGCTCCGTTGCCTCGGCGAAGGACGTCCTCAAGCTTAATGGGAGATTTATTGATGATTTTGTCGATGATTTGCACGTTCAAGCTCGGAGCAAATGAAAGGaGCCACAATGTTGACGAGGCTTTTCAGTGACCCCTCGCTGCTTCCCGGTGTGCAGAAATACTCGGGCTGGGCGGAGGACAGCGATGACGAGGATTCCAAGCTCAAAGAAGAGGATCAGGACACCCAGGAGGACACGGAGGGATCGGAGCTGAGAGGAAGCAGCCGTACGCACTCCGAGCACGCCGGGGAAGACGACGAGGACgatgaggtggaggaggaggacgacgaCGACGGAGAGGATACAGGGGGGGACAGGCCCAAGAAAAGGGGTCCCAAGAAGCGCAAAATGACCCCGGCCCGTGTCGAGCGCTCCAAGATGCGGCGGGTAAAAGCCAATGCACGGGAGCGTACCCGCATGCACGACCTGAACTCTGCGCTCGACAATCTGCGTAAAGTTGTGCCCTGCTACTCCAAAACGCAAAAACTTTCCAAAATCGAGACACTGCGGTTGGCCAAAAACTATATCTGGGCCTTGTCGGAGATATTGCGCTCTGGAAAAAGGCCTGACCTTGTGGCTTACGTCCAGACGCTGTGCAAGGGACTCTCCCAGCCCACGACCAACCTGGTGGCGGGGTGCCTGCAGCTAAACTCCCGTAACTTCCTAACCGAACAGCAGTGTCAGGACGGGGGGAGGTACGGGTCTGGCTCCTTCTCCATGCATTCCTACCCATACCAGTGTGCGCGTCTCTCCAGCCCCCACTGCCAGCCGGGCTCGGGCTCAAACTCGCATCCGCTGAGGACGCACGGCTACTCCGCTTACGATTCTCTGTACGGTGGGAGCGGATCTCCAGAGTATAACAGCCCCGAGTATGAGGGGCCCCTCAGCCCGCCACTGTGCATCAATGGCAACTTTTCCCTGAAGCACCAAGGCTCTGCGTCCCCCGAAAACGAGAAGGGGTACCACTACTCTGCTATGCATTACTCCGGCCTGCCTGGCTCCAGAAACACCGGGCCCCACAACCTGGTGTTTGGCTCCTCGGGGGCCCGGAGCGGCATTCACTCTGAAAACGTCCTGCCTTACCATGACATGCACTTACACCACGAGAGGGCCCCAGTATATGATGAACTGAACGCATTTTTTCATAATTAAAATGAGAAGCCCATCGTGCGCCCCTTGCAATCAACAATCTACGGCACACACTTTTTAACAAGAGTCCGCGCCGGGATTTAGACATTCTTGAGAGATGTTTTAAACGTTGTCATTAGTGTTTTCctttcatttattctgtcttaacttttttttttttgctatagTCAGAGATGTAGTGGAGGGTAATCACCTAACCCACAATCGGATTTGTGCAACAGAAGTTATCCAGATTATCAAGCTGAAATAAGTCTCTAAAAGGAAATTTGACAAACAAAGCATAACAAGACCATGATGATAcgggactttaaaaaaaataatgtcttttaaagtgtgatttgtgtttgtaTCAGTGGTTGTTTGCATTTGGATGACTGGAAGTTCAAGTTTACCCACTTATTTATTTACCACTACATCACTGGCTACAGCTACACCTTGACATGGCGGTTATTTTCTAATATTATGAAATtagaaataaatcaataaacaaGAATGCGAATCATATTTAGGCCTACTGTACGTGCGAGATTTGGGAGGTTGTGTTTTTTggaaataatgaaatataaaaaattttaaaataaatgcagagggaAATGCTGAACCGATAATAAAAAAAGTGCTAGTTGGGTTGTTTTAGCAGAGTCTGTTCTTCAATCAATCGTTTCGCATCTATGCAAAACCCAACGATATCACAGAGTGAGGCAACAAGGCCCAGAAAGACACTGTATGTTTCATCAGCACTGttgcacacgcgcgcgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgaacacccAACGAATCTGACAATGGTTGTGCTTGTCAAAATGttcaactaccaaaaacaataaCGATATACAAAATACGGTGAAATCAGACATTTTTCACATGTTTTTTAACtcttatttattcatattaccCTTGTTACCTTATTCTTCTAATTGGTCCATTGCACTGtattttgatttaaaataaaatggtataatatttttgttttgatttgcaATGATATGTTAAATTGGTTATTATTATAGTTAcgattatgattattattatgcctattattattatgattattgcACGTAtttattgtgttgttttttgtaattaATGTTATTCATTGGAAATGAAGGGATCCCATGTGTTGCTGAGCATTTTTTCATAAAATTCAAGTCTTTCAACTTTGTATTCAACCAACTGTGtggtaaaataaaatgacaataaatgagA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212067 lncRNA downstream 99947 19568276 ~ 19568500 (-) True G156466
TU212024 lncRNA downstream 144456 19432371 ~ 19523991 (-) True G156430
TU212042 lncRNA downstream 189522 19478509 ~ 19478925 (-) True G156446
TU212011 lncRNA downstream 244889 19410192 ~ 19423558 (-) True G156418
TU212005 lncRNA downstream 330825 19337289 ~ 19337622 (-) True G156414
TU212139 lncRNA upstream 34088 19707030 ~ 19709308 (-) True G156510
TU212200 lncRNA upstream 259720 19932662 ~ 19936556 (-) False G156562
TU212204 lncRNA upstream 263335 19936277 ~ 19941892 (-) True G156562
TU212210 lncRNA upstream 277449 19950391 ~ 19952982 (-) True G156567
TU212254 lncRNA upstream 295990 19968932 ~ 19972503 (-) True G156595
XM_039823784.1 mRNA downstream 44696 19607886 ~ 19623751 (-) True fbxl20
XM_039825597.1 mRNA downstream 64450 19578284 ~ 19603997 (-) False LOC120575024
XM_039824015.1 mRNA upstream 58425 19731367 ~ 19743502 (-) True LOC120574025
XM_039824016.1 mRNA upstream 74369 19747311 ~ 19748981 (-) True rprml
XM_039823888.1 mRNA upstream 194119 19867061 ~ 19900525 (-) True rnd2
XM_039823886.1 mRNA upstream 269025 19941967 ~ 19947921 (-) False si:busm1-163l24.3
XM_039823885.1 mRNA upstream 269025 19941967 ~ 19947921 (-) True si:busm1-163l24.3
TU211982 other downstream 417191 19249726 ~ 19251256 (-) True G156396
TU211888 other downstream 547515 19108899 ~ 19120932 (-) True G156321
XR_005642008.1 other downstream 1314282 18354082 ~ 18354165 (-) True LOC120575517
XR_005642009.1 other downstream 1315001 18353363 ~ 18353446 (-) True LOC120575518
XR_005642010.1 other downstream 1315603 18352761 ~ 18352844 (-) True LOC120575519
TU212205 other upstream 272646 19945588 ~ 19947890 (-) False si:busm1-163l24.3
TU212206 other upstream 272646 19945588 ~ 19947890 (-) False si:busm1-163l24.3
unassigned_transcript_859 other upstream 347275 20020217 ~ 20020288 (-) True trnac-gca_26
unassigned_transcript_860 other upstream 498345 20171287 ~ 20171358 (-) True trnac-gca_27
TU212545 other upstream 1396084 21069026 ~ 21071488 (-) False atxn7l3a

Expression Profile