RNA id: XM_039823725.1


Basic Information

Item Value
RNA id XM_039823725.1
length 2505
RNA type mRNA
GC content 0.38
exon number 3
gene id LOC120573855
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8137584 ~ 8141833 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGACTGGAAAATTCTAAAACACAGAGGTTGACTCAGTGAATGTCTTTCCTCACCATAAGTCCTCCTCATAGCATCAAATTAACACTGGATGATAGTTCTTAGCTGTGTGGGTGTACCTGGTAGTCAGCGTGTGGAGCTACAGACCATTTCCCAGGTGGCGGCCCGGTGTGGGGAAAATGTGACACTGACATGTGAAGCCAAGCCATCAGGCCCGTTGAATATGGTCAATTTTATCTGGCTggctaaaaataaaagtatgtgtCAATATCCAGAAGGCCAAACTTCCCCCGAGGTTCTGTGTGAAAGCACGGACCAGCCTCTCCACCACAGCCTCACTCTGACTCTCCTCAACGTGATGCCGGTCAACGAGGGAACATACCTCTGCAAACTACAGTCTAATCTCGGAGCACTGACTAAGAAAACTGTTGTTACAGTACAAGACTGCCTTGGAAGTTTTGACTCCTCCATCAATGAGTCTCATGCTGAGTGCTGGTTCAGTGGAGTTTACCCCAGTGGAACCATCTCCTGGTTCCAGGGAGATGTGAACTTAACCGACCCTGCTGGCACACGTGAAGAGGTGGACCATCTTGGACTGTACAATGTCTCGAGTACAATAGCTGTACAGAAAGGAAACTTGAGCCAGCCATATAATTGCTCACTGTGGATAGCTTTGGCCAGGAAGCATCTCTGGAGTCAACAGCTACCTTTGGTTGGGAAACAGACCGGGTCATCGGGAAGCATGGTCAACCTGCAGTGGATCTGTGTAATGGTGGAAATAATGATGGTCAAATGTGTGACTTAGAGGAAACAGGTAGAATTCCGGTATGGAAAGTATGTAAAAGTAtggttttttttaagaaaacagaaatgaaaaggAGCTCATTTTTGAGGCAGGAAAATGTTAATGGTTAAGAGTATaaacttcttttctttttcaacatgctatctGATTTCTTgcatttagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatactgtattcatcccgagggaaattttaggcatccagtagcttagacaatcagaacacaacaaacacacatacatatatctcacatacataaaaatcactcacagaaatttaaAGACTTGATTAGGGAGAGCTTTTCTACAGATGCTCACTGCTCCACTGTTATCATTCATAACTAATAAACGTGAACTGTGAGAGGACAGAGGACTGTGTCAGAAGACTTTGACTTACTCAACAATGTACAGttttcctaaaaaaataaaaataatttctgCTTTGCAGATACAGCATCTCTGTCTTCAATGCCCAGTCTTGTGTTATTCTAACTTACcagaaaatcacttttttaAACCGTCACTTCATCCTGAGGGCCAGAAGGAGGCAGTCTTCTCATGTTAGAAGAATGATTACAGCAGATTTACTGATATTACACACCTCCTGCATATTAGAGCACTATTCAATATTCAGAATTTACTGCAAATACATAAACACTGAAGGGAAGGAAATATGCCAACTAGTTGTCCAAAAAATTGCACAGATTCTCAAAGCAGACATGATTCATGTCAATGGCTAAGCAGTTACCTGAAGGGCAATACAAattgaattacatttttaaatcaattcaatCTTAATGAATAGATTAGGGATAAAGTCAAATATGAAATCCCAACTGTTATTTTCTGTCAACCCTTTGTTCTGATGTTTGTAAGATCTGTTTTTAAGTGGACACTAATTTGAAACACAGCAACTGATGATGCAAATCTGGGGATATTTTGTATtaagtattttttatatattgcttTGTAGTTATTCTGCATACAAGTTTGAAATGTACTGCATTTCATCGAGGTAAGCTTTGTGAGAACATGTCATGTAAACACTTACTATGAACAAAGTtaacttttcttcttttacaaATCGTATATCCTCTCTTTATTAGGATTTGTACAcagtgttcctttaaagctgGCTGTTCCGAGCCAATGTGTTTGCTCTGGTGTGGTGTGGAAAGGATGTTTTGTTACGAGAGTTTAGACATCTGTACACTCCTCACTGCGCTTCCCTGCAAACGTGGCTCCATCAAAGACATTCAGGTACGCATTCCTTCAGGTCAACTAAGGCAAGTGTTGCCTTAGTGTGTCACCAGCGGTGGTGGAAgatgtattcagatcctttgtaaaagtactaatatcacactgtaaaactactctgttacaagtaaaagtcctgcattgaaaatgacACTTgtgtaaaagtctgtaagtatcatcaggataatgtacttaaagtattaaaagtaaaagtacccaaTACAGAAAAAATCCTAACATTTTATaaactggaaacaatcaaaacagttctgtcaatcaactaagtgtttattTGGCTAAAACTGTCAGCTGGACTTATATGCCTATATATTTttgggtagtttcatttataataaaacattgtattttataaacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207058 lncRNA downstream 45315 8087926 ~ 8092269 (-) False G152863
TU207059 lncRNA downstream 45315 8087926 ~ 8092269 (-) False G152863
TU207063 lncRNA downstream 45315 8087926 ~ 8092269 (-) False G152863
TU207064 lncRNA downstream 45315 8087926 ~ 8092269 (-) True G152863
XR_005641917.1 lncRNA downstream 71304 8063001 ~ 8066280 (-) True LOC120574882
TU207139 lncRNA upstream 150069 8291900 ~ 8292215 (-) True G152924
TU207140 lncRNA upstream 151207 8293038 ~ 8293257 (-) True G152925
TU207389 lncRNA upstream 308191 8450022 ~ 8454668 (-) True G153106
TU207394 lncRNA upstream 321348 8463179 ~ 8558912 (-) True G153111
TU207395 lncRNA upstream 326473 8468304 ~ 8470293 (-) True G153112
XM_039825025.1 mRNA downstream 21585 8114974 ~ 8115999 (-) True rasd4
XM_039825384.1 mRNA downstream 37186 8093052 ~ 8100398 (-) True LOC120574885
XM_039825382.1 mRNA downstream 51641 8073505 ~ 8085943 (-) False LOC120574884
XM_039826258.1 mRNA upstream 155907 8297738 ~ 8302271 (-) True nptx1l
XM_039826280.1 mRNA upstream 332649 8474480 ~ 8484692 (-) True cdr2l
XM_039825717.1 mRNA upstream 346548 8488379 ~ 8504839 (-) False recql5
XM_039825715.1 mRNA upstream 346548 8488379 ~ 8504839 (-) False recql5
XM_039825716.1 mRNA upstream 346548 8488379 ~ 8504819 (-) True recql5
XR_005641918.1 other downstream 37186 8082138 ~ 8100398 (-) False LOC120574885
TU206683 other downstream 1416941 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 1909470 6182408 ~ 6228114 (-) True G152441
TU206278 other downstream 2523916 5610556 ~ 5613668 (-) False atp5mf
TU206260 other downstream 2554723 5580368 ~ 5582861 (-) False bud31
TU207167 other upstream 299348 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 589566 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 670511 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 711929 8853760 ~ 8856957 (-) True tufm
TU207546 other upstream 711929 8853760 ~ 8857571 (-) False tufm

Expression Profile