RNA id: XR_005641788.1



Basic Information


Item Value
RNA id XR_005641788.1
length 235
RNA type transcript
GC content 0.40
exon number 2
gene id LOC120573864
representative False

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 1845740 ~ 1872092 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AGATGAAGAGATAAGATGGAGGAAGACAAAGATGACAACCcagcagctggaggaggaggagagtctGAAACCAAATCTGTACCATCTGCAGCCAATGAGAAAGTGATACCTGAACTCACACTTGTGTTAATTGGTGACAAAAATTCCATTGAGATTGGATCAAAAAACATCTTACTTGACCATGACGGACAAACTAATGTGGAACAGTTTTCAACCAGACTGTATGATTTGTGTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU204265 lncRNA downstream 10105 1590672 ~ 1843537 (-) True G150858
TU204238 lncRNA downstream 31518 1816065 ~ 1822124 (-) True LOC120573867
TU204267 lncRNA downstream 114791 1723700 ~ 1738851 (-) True G150860
TU204270 lncRNA downstream 115035 1589424 ~ 1738607 (-) True G150863
TU204261 lncRNA downstream 116635 1724122 ~ 1737007 (-) True G150856
TU204459 lncRNA upstream 55315 1909416 ~ 1982822 (-) False G150992
TU204453 lncRNA upstream 91464 1945565 ~ 1971635 (-) True G150992
TU204454 lncRNA upstream 91464 1945565 ~ 1971635 (-) False G150992
TU204456 lncRNA upstream 95169 1949270 ~ 2072683 (-) False G150992
TU204457 lncRNA upstream 116974 1971075 ~ 2072683 (-) False G150992
XM_039823753.1 mRNA downstream 31514 1816293 ~ 1822128 (-) False LOC120573867
XM_039823750.1 mRNA downstream 31514 1816293 ~ 1822128 (-) False LOC120573867
XM_039823748.1 mRNA downstream 31514 1816293 ~ 1822128 (-) False LOC120573867
XM_039823749.1 mRNA downstream 31514 1816293 ~ 1822128 (-) False LOC120573867
XM_039823754.1 mRNA downstream 31827 1816293 ~ 1821815 (-) False LOC120573867
XM_039825206.1 mRNA upstream 150775 2004876 ~ 2058639 (-) True LOC120574768
XM_039824602.1 mRNA upstream 278631 2132732 ~ 2161724 (-) True farsa
XM_039823890.1 mRNA upstream 310619 2164720 ~ 2209257 (-) False ilf3b
XM_039823889.1 mRNA upstream 310619 2164720 ~ 2209257 (-) True ilf3b
XM_039823892.1 mRNA upstream 317140 2171241 ~ 2209257 (-) False ilf3b
TU204241 other downstream 31796 1818724 ~ 1821846 (-) False LOC120573867
TU204249 other downstream 113717 1591689 ~ 1739925 (-) False LOC120574289
TU204260 other downstream 114161 1724122 ~ 1739481 (-) False G150856
TU204258 other downstream 154561 1658877 ~ 1699081 (-) False LOC120574289
TU204266 other downstream 233171 1608688 ~ 1620471 (-) False LOC120574287
TU204533 other upstream 301495 2155596 ~ 2161722 (-) False farsa
TU204768 other upstream 688328 2542429 ~ 2598982 (-) False G151146
TU204751 other upstream 742701 2596802 ~ 2598982 (-) True G151146
TU204905 other upstream 1019817 2873918 ~ 2896343 (-) True G151216
TU204921 other upstream 1057225 2911326 ~ 2915367 (-) True G151227

Expression Profile