RNA id: XM_039823784.1


Basic Information

Item Value
RNA id XM_039823784.1
length 5564
RNA type mRNA
GC content 0.44
exon number 15
gene id fbxl20
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 19607886 ~ 19623751 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCCACAGTAATAACCATAACCAACAGGTTACAAtccttaatacatccatggttacaATGTATGTTTGAGAACAATGAATGCAATAGAATAGAGTTAATACGGTTTTAAATGGCTAATGTGTCAGAAAAGGACAAACGTTTCGCTTCTGTGGCCCGTATAGTACACAAATCTTATTGTGACAAAAATTATGAACGCTTTAATTGGCCCACACTTCAATGACTGCCCATCATAACTTTACCATATTAGACATAGCCTACATGCTATTTGTTATTTCGGTTATATCGGGGAAAGCATCAACTAGGCTATGTTGGCCTATAGTCATAATCTCTCTTTGCATTGTGGTGTTAAAATCTATACACCAACTGGGAtcaaaccttttttattttttataatttcataGTCTATCTAGTCATGAACCCAGCTGTTGCTAGCCAGGTATTCGTGCTACGGGGACTGTCAAAAGGTCGACACCCCGTTTTGATATCTTTGCTCCTGGGCTTTAGGCTACGCGGCCCGCACGAAGGAACAGCCAACAGTAGGCTAGTAGCAAGCAGACGTTTTTTTGTGCTTGGGTAATATGCATTAGCGCAgtttcattatatttattatttctaagTGATGTAGGCGTAGTAGCCTACAAGCTCCATTTTAGGCTGCCAGGTCCTATTCCTGTAGGGCTATtgtgtggatggatggaaacctgtagggggaggaggaggtgactGCGAAGCGAGCAGATAAGAGAACTGGCTTATTGGCTTGCTCCTGCCTGGAGCTCCTATTTTATCAGGAACAAGAGGTATTGCAGTTTGTTTTACAGGCCGAAAAACAACGACATCGCACCCAGGAGCATACCGAGAGGACGGTAGCATGATAGTCGTGGAGGGGAATCGGCAGGAAGAGGGCCCGTATCTGCATTTTACTTCGCCTGTACCGAATTCATTGAGTCGGTAACCAGCGTCCGAAATGGGGAAGGAGGTAAATGGTGTTTCGCGGAGCCGGTTTGAGATGTTCACAAACAGCGATGAGGCGGCCATCAATAAGAAGCTGCCTAAGGAGCTGTTGCTACGAATCTTCTCCTTTCTGGATGTGGTGACACTCTGTCGCTGTGCCCAGGTCTCACGGTCCTGGAATGTTCTGGCCTTGGATGGCAGCAACTGGCAACGAATCGACCTCTTTGACTTTCAGAGGGACATTGAGGGCCGGGTGGTGGAGAACATCTCAAAGCGATGTGGGGGGTTTCTTAGGAAGCTGAGCCTGCGGGGTTGCTTGGGTGTGGGTGACAGTGCCCTGAGGACTTTCTCGCAGAACTGCAGGAACATTGAGCTGCTTAGTCTGAATGGCTGCACCAAGATCACTGACAGCACCTGTAATAGCCTCAGTAAGTTCTGCCCAAAGTTGAAGCACCTGGACCTCGCCTCCTGTACCTCAATCACCAACCTGTCCCTCAAAGCTCTCAGTGAGGGTTGTCCCCTGCTGGAGCAGCTCAACATCTCCTGGTGTGATCAGGTCACCAAGGATGGCATCCAGGCCCTGGTGCGTTGCTGTCCTGGACTCAAAGGCCTTTTCCTCAAGGGATGCACACAGCTCGAGGACGAGGCTCTGAAGCATATCGGGGGTCACTGTCCAGAGCTGGTCACACTCAACTTGCAGACATGCTCACAGATCACAGATGAGGGTCTCATCACAATTTGCCGGGGTTGTCACCGCCtgcagtctctgtgtgtgtcgggCTGTGCCAATATCACAGACGCCATCCTGCACGCCCTGGGACAGAACTGCCCTCGCCTCAGAATATTAGAAGTGGCTCGCTGCTCTCAGCTTACAGATGTGGGCTTCACTACATTAGCAAGGAATTGTCACGAGCTTGAAAAGATGGATTTAGAAGAATGTGTGCAGaTCACAGATGGAACACTCATCCAGCTGTCTATCCACTGCCCTCGTTTGCAAGTCCTGAGTCTATCTCACTGTGAGCTGATCACCGATGATGGCATCAGACACCTCGGCAGCGGCCCCTGTGCTCACGACCGTCTGGAGGTGATCGAGCTGGACAACTGCCCCCTGATCACAGACGCCTCGCTGGAGCACCTTAAGAACTGCCATAGTCTGGATCGTATCGAGCTCTATGACTGCCAGCAGATCACCCGCGCCGGCATCAAGAGACTAAGGACCCACCTGCCTAACATCAAAGTGCATGCATACTTTGCTCCCGTCACTCCGCCCCCCTCTGTCGGGGGCAGCCGTCAGAGGTTTTGCcgctgctgcgtcctgctatgATGTAAAGACAACAACCCTCCCCTTTCCTCTCATGGTGTCCCTTGTCAACGCTCCCTGCAGCCTGGCACTTGacccctgacctgctgccccCCTCCTGGCGCCCTGTCATAGAGTACGTGCTGGTGTGTCCCCCCTTTTGGAgctgcagagagagggagaaagccAAAACATGCTACAAGGTCTTCGGTAACGTTCCCAAAAACATTCCCGAATCTCTCCACcacacaaatacagtacagacacaacacactacCATGCACAGATTATCGCTTAAAAGAATGCCAGAACATTCCTGGTCTGTGTTCAGTGGACAAACCAGTATTACAAAGAGGGTTATGTAAAAATCAAATGTGGTCCCCACTTTTAAAGAATTTAACTTTTCATCAAATGGAAGTAAAGAAGAATCTTCACATCTAAAACCATTGTTCTGTATTTTAGGGGAAGTGATCCTCTTCTCTTATTCAGCACTTTGAGACAGATTACAGTTCTAGCCTCTAAACAGAATattgaaaaggctgaaaatcCCTCTTAACCACTCACACATAGTTCCCTCTGTGTTGAAGGTCACTTAACAGCTACCTCGAGACGGGAGCTACTTTGTTCTGCTGGCTGTTTATTTCAAAAAGGAGCAGCGATGCAGCCAGTAAACTGCAGACACCTCCAACACACAAAAAGCAGGAAGAAAGCCTAGTTttgggatttaaaaaaacaaaaaacatacttGCAGCTATTTGCACTTACAGTAAAGCAATGAGACACTTTACAAAGACGACCATCTCAGAATTCAAGACTGCgatttactaacacacacaacacatcttCATGCACACACTGAGCTTGCTACACCTGTACCCtcacctctctctgtgtctctgttacAATCAGAAGCTTCAATAtactgaagacaaaaaaagacaaagtttaatatttttctaaaaaaaaaaaaaaaaaaaatggacaccAATTTAGACTCACAAGTGGGGACTTGAGAAGATGCCAAATGTTGCATGTAACACCTCTAGTTTTTTAAAATCTAATTGTAAATATATATGAGGACTGTGGAGTCCGAGAGTCGAAGCCAGCTAAACGACAGATGATGATATGAGATGGGGCAGAGATTTCGGTCGATGGGTCTTTCAGAGGGAACTATGGCGAAGCTCACACATTTGTTAAGTGTGTTAGAATATGTGCTGGAGCTTTGGACAGTCAAAATGAGCCACCACTTAATCTGGAGTTTGACAGAAGAACTGATGCTGGGCTGGGAAAGCTCATGTCAACAACAGAAAAGTTGAGTTCTGACAgaatggagaagaaaaaaaaaaagtctgacattACTACATGAATTCATGCTGTCAGACCAGAACAATGGAAAGAAAAAGCCAACTGAAAACAATCAAAGTACGTCTATTTTCAGTTAGGGAGATTTCATTTAGTTGCTCTTGTTTTTGCATCGGTGACGGTTCTGATGACGAGGAACTGGTGAACCACACGCAGCAGTGAGAGGACATCGGAGTGGCATCAGCGACTCCTCGACTCCTATGAGGCCTTGCAGGGGACAAAGTGACAGTGTGTTACACCCTGTTACCACCTGTTACCTCCTCCGTCTGTCTGCTACCAGTGACGCTGCCGGAGGTATACAGCGCATCAGACCGATGGAGTCACTGAAAGAGGAAGTCAGCTGAATCTTGAGCGCGCAATTCTGGCCTGATATGACAGAATGATTAATGGACTTCGGCCCCCCGCCCTATAAAGTATTGAAGCCTTTTCTTATGGATTATCTTCTCCTGCACTTGTACCTGCATTATTCcgtgtccttttttttttttttttttttttttttcttcccatttccttttttataaaTGTCTTTTACTGCTTTTCTTTGATTCCCTCTGGATCTCtaccttttctcttcttttgcaTTTCTGTTTTGGTGTGGTTTGAATTGCGCCTGCTTCGTGTTTGAAGTCATGAGTTCAGTTTCTCCAAGTTGAGTTTGAGCCCTCTTCCAGTCCTCAGTTTTGATCTGatggtgtttgtgttttcattaaGAGTTTATTGTTACTAAATGTCCAGAGTGTAGCCTTTGTCCAAGGGAAGAGTTGACGCCAGTGCAATTGTAATAAATGTTGAAATTTgagttggattttttttttttttttttaaatgcaagagTTGAGAagttctgtatgtatgtatgtatgatgtaGGTTCTACTTATTGAATGTTTCCATCAAGGAGAAGACCTCGGGATGGATGATCAGGCATTGTGTGCCACTTTAGCAGAATCAGATTTTTCTCCCATATGTGGGCTTTCCTCTCTTTTATTTGTATGCCTTGCTTTTCCTCCTATAATGCACCCTGCTCAACTACATCAAACAAGACTGTCATGGGTAAACCCAGTGTGGAATATTGACCACTCACAAATGTCCTCGTTTTGGTTTTAAGATGCAAGCCAACAGGCAAAACACTGAATGCTGATTCTATTCAGTTTGAGATTTGACAGCTACGCCAGGCTGGAGAATACAAACTGAGATGAATCCGGTGTAATCCAGTCTGATCGGTTTTGTTTGAATGGGGATTTATGGGGGATTAACTAACAACTAAGAGTCAAAATGGCAGATATATCTAATGTACTCTGTCATTGTGCTCCGGGGTTAAGACCATTAACTGGAGGTAAAAGGAAAAGTCATAGGATTTAGACTATGAGCCTGGTTGTAACACCTGCTTGCCCTTGTCATGCACTGGATATGTGGCACAGGCTGAGTCATGAGTGCAGACAACATGTGCTTTTAAGGCAAAACACTTTGAATGATTACAGGTGGTAATACTCAACCTGCTCCTGATGGTTTCATGTGTACAAAAGAAAGCTGTCCTCAGTCTTCATGGTACAAAATACTCTACCGGCTCTACAAAGCAAAACACCAGATTTATTCTTCCTCAAGATATCAAACGCCTCCTTGTCCTTCTGTCAGACCTTCACCAGTTTACACAGAAGTCACGCTACTATGCTCTGGATGCGTTTGTTTCATGTCCTAATACTGGACTAAGGTTGAGGATTAGGACAAGTGGTGAAtctacagtgtgtttgtgttcatggTAGAGTGACACCTGAGaaatttcaaaaacaatttTGACAATGACTGTAGTTCATACAATTACTGTAaatcttttcctttttgttcttttctttcatttcattttttttttattttatttttttttacaattaacCGATTATAAATGAATATGTAcgtatgaataaatatataccTATATTATTAA

Function

GO: NA

KEGG:

id description
K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212067 lncRNA downstream 39386 19568276 ~ 19568500 (-) True G156466
TU212024 lncRNA downstream 83895 19432371 ~ 19523991 (-) True G156430
TU212042 lncRNA downstream 128961 19478509 ~ 19478925 (-) True G156446
TU212011 lncRNA downstream 184328 19410192 ~ 19423558 (-) True G156418
TU212005 lncRNA downstream 270264 19337289 ~ 19337622 (-) True G156414
TU212131 lncRNA upstream 43179 19666930 ~ 19727372 (-) True G156504
TU212139 lncRNA upstream 83279 19707030 ~ 19709308 (-) True G156510
TU212200 lncRNA upstream 308911 19932662 ~ 19936556 (-) False G156562
TU212204 lncRNA upstream 312526 19936277 ~ 19941892 (-) True G156562
TU212210 lncRNA upstream 326640 19950391 ~ 19952982 (-) True G156567
XM_039825599.1 mRNA downstream 3889 19578284 ~ 19603997 (-) False LOC120575024
XM_039825597.1 mRNA downstream 3889 19578284 ~ 19603997 (-) False LOC120575024
XM_039825596.1 mRNA downstream 3889 19578284 ~ 19603997 (-) True LOC120575024
XM_039825600.1 mRNA downstream 3889 19583147 ~ 19603997 (-) False LOC120575024
XM_039825598.1 mRNA downstream 3889 19583147 ~ 19603997 (-) False LOC120575024
XM_039823647.1 mRNA upstream 44696 19668447 ~ 19673683 (-) False LOC120573806
XM_039823648.1 mRNA upstream 44696 19668447 ~ 19672942 (-) False LOC120573806
XM_039823649.1 mRNA upstream 44696 19668447 ~ 19672430 (-) True LOC120573806
XM_039824015.1 mRNA upstream 107616 19731367 ~ 19743502 (-) True LOC120574025
XM_039824016.1 mRNA upstream 123560 19747311 ~ 19748981 (-) True rprml
TU211982 other downstream 356630 19249726 ~ 19251256 (-) True G156396
TU211888 other downstream 486954 19108899 ~ 19120932 (-) True G156321
XR_005642008.1 other downstream 1253721 18354082 ~ 18354165 (-) True LOC120575517
XR_005642009.1 other downstream 1254440 18353363 ~ 18353446 (-) True LOC120575518
XR_005642010.1 other downstream 1255042 18352761 ~ 18352844 (-) True LOC120575519
TU212205 other upstream 321837 19945588 ~ 19947890 (-) False si:busm1-163l24.3
TU212206 other upstream 321837 19945588 ~ 19947890 (-) False si:busm1-163l24.3
unassigned_transcript_859 other upstream 396466 20020217 ~ 20020288 (-) True trnac-gca_26
unassigned_transcript_860 other upstream 547536 20171287 ~ 20171358 (-) True trnac-gca_27
TU212545 other upstream 1445275 21069026 ~ 21071488 (-) False atxn7l3a

Expression Profile