RNA id: XM_039823879.1


Basic Information

Item Value
RNA id XM_039823879.1
length 3026
RNA type mRNA
GC content 0.50
exon number 10
gene id epn3a
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15512352 ~ 15522509 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGCGGTGCCGTCTGCAAGCCTGGATTGTGATATGCACACAACTATGTTTGATAACAAAACAGCACCGCTGCGGTTTAGTTTTGGATTCATTTTGTGCACATACCGGCTTTCCTCTGCACttggaatatttttttcacTCTAGTTCATTTCTCTATCCGAAAGCTACGGGATAGCCTACGTCGAGAGGCGGAGGCGTTTCTTCTTCCACCCAAAGCTTCCCCAAGTCGGGACCCCACTGGCGCAGTAGGCTATGTCATGAAGCAGGAACGCATTTGTGGACATCGCTGAAGTTCCCAATAGGAGCTTGACTTCATTGCATTTTTCCACTGAACTGATCTCTAACGAGCTACCTCGCCTGAGGCAACACAGTGGGCTAGCCTGCTGTTAGACTATCTTTTGCCACCTGTAAAAAAACACTACTGCCATCATGCAGACCTCATCGCTTCGCCGGCAGATGAAAAACATGGTCAACAACTATACGGAGGCCGAGATCAAGGTCCGAGAAGCTACCTCCAACGATCCGTGGGGTCCTCCCAGCTCGCTCATGTCTGAAATCGCAGACCTGACCTTGAATGTAGTGGCTTTCCCCGAGGTTATGGGTATGATCTGGAAGCGACTCAATGACCACGGTAAAAACTGGCGCCATGTTTATAAGGCACTGACCCTGCTGGACTACCTGATCAAAACAGGCGCCGAGCGTGTGGCCCAGGAGTGCCGGGAGAACATTTACACCATCCAGACACTTAGAGACTTCCAGTTTATGGATCGAGATGGACGTGACCAGGGTGTCAATGTCCGGGAGAAGGCCAAGCATCTGGTGGCTCTGCTGAAGGATGAGGAAAAGTTGAAGAAGGAGAGGAGCCAGGCACTGAAGACCAAGACGCGCATGGCGGGAGCCTCCAGTGGTTTAGGCTCTGGATCGCTGCCTCCTCCGTACCCAGGGCATCGCACAAGCCAGCACATTGCGCCAGGGGTCTACGGGGAGGAGATGGGCAGGTGCAGAGGCTCACCATCCTCCTTTCATTcctcctcttcctctcctcgaCTTGCTCCAGAAATGGAGCAAGCTCGGCCCACGACCAGTGGAGAAGAGGAACTGCAGCTGCAGCTGGCCCTGGCTATGAGCCGAGAAGAAAGTGAAAAGCCTGTCCAAACTGCACCTGCTGCACTGGATATGGATGAGGAAACCCAGCTCCAGTTAGCCCTGCGCCTGAGCAAGGAGGAGCACCAGCAGGAGCAAATCAGTCGCCAAGGAGACGAGTCAATGCTCAAGCAGGCTATGGAGGACAGCATACGTGCGATGGAGCCTAAAGGCGGGACCGCCTTCATGGACCTGGTAGACGTTTTTGCATTGCCCTTAGATCAGCCTCCAAGTGACAACCGATGGAATAATGCCACACACCAGGCAGCTGCTTGTCCCGGGAGCACAGACCCCTGGGACTCCCTGGaaggcagcaccaacacctcGAGAGTAGATGTTCCTTGGATGGCACCCCCAACTTCCAACAGCCCCCCTCCACCATGGGAGCCCCCAGTCGACCCCTGGGATGACCCGAAGAGTAACCTCAATGCCCCAGGCCGAGAATGGCCCTACCCTGCAAACACAGCTTCCTCAGGAGTTGATCCATTCTCAGCACTCAAGGGAGCCGTGAGGGAACCTTCTCTCCGACCTGGAAGCCCCTCAGATGGGGATTTGTTTGATGAGGCCATGGATGGAGGTCAGGTGAATGTGAATGGGCGAAGGGAGGACAGTCCGGAGCCATTTGATCTGTCACGTCTTGGAGAAAGCCTGGCTGCCCCCAGCCCTCGTACATGCCGGACACCTGAGGCCTTCCTGGGCCCCACAGCAGCTTCTTTGGTAGACCTGGAAAGGTTGATTCCAGTAAATCCTCCAGCCAAGACCATGAACCCCTTCCTATCAgGCCTCAGTGCTCCTTCACCCAACAATCCATTCCAAACTGAGCAGCCCAAACTAACTCTGAATCAAATGGGCTCCAGCTTCACCGCTCTCCAGGGCACTTCTCTTCCATACAGTGCTTCCTTGCCCCTGCCTATGAGCCACCAGCCTGCCAGCCTCCCTTTGTCACATACTCACCCCACCCAGCCTGGTCTGGGCCTGCCAGGGAACCTCCCTGAGCCCTTGTTGCCCTTCTCTTCAGCCAGCACTGACGGATCACAGGCTGCACAGAACAGTCAGAACCCTTTCTTGTAAGGATGAACTAAACTGGAGAAAATATCTAAGAAAAAAGGGGAATGCCTTTAGGTTATGCTCTTGAAATATAACTCTAACCGCAGACTGAACTTCAGCCCAAAGGACATGTATGAAAACCCTATTCTTAGCtgtttttatattgtgttataaTACAGTAACCCTTAGATTGATGCAAGCTGGTTCTGCTCTTCACTGCAACAATCTGTCCTGATCATCTTGTCATGAATGCAATAACAGGGTTTAAAAGAGATAACACCTTTGTATTAGTAACAAATAGTGTCATGTAAACCTTCTTTAAGACCATAACCTATTGCGGATTTAATTCAGGAAAGAAAACGTACACAAAAGCACAGTTCGATAAAATTTTGTTGTCACTTTACTTAGCCACAGTTACCAGGCAAATGGATTACGGCTTTTCAAGTAGTCAACAAGTCTCCTGCTCACTCACCTGTTTGTGTGATTGGCTTAGCTGGCTACTGCTGCTAccatatacaaatataaaaaatagattATTGATAAGAGACAAGAGTTAGAGACATGTTGATTCTTGAAATGTTGCTGCATCATCACGGTTAACGTTGTGGAGCTTTTGTTAGACCTAAACTGATGAGCAACACCAGTGTGTACATGATTTTACTACAGTAAAATCAATTGCTGGGGTTAACTGAATTAAATTACAGTTTGGGAGGACTGGAAGTGCTTTAGCATTTGCTACAAGCAAGGCAACATTAGAAAATGTATGAATCATGAGTTTTATTCATTGCTTGTGAACCAATTACTTTCATCAAATATAAGGGTATAATTGGAACATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210269 lncRNA downstream 107783 15368229 ~ 15404569 (-) True G155151
TU210240 lncRNA downstream 198760 15312080 ~ 15313592 (-) True G155126
TU210217 lncRNA downstream 349917 15156429 ~ 15162435 (-) True G155106
TU210204 lncRNA downstream 372499 15133957 ~ 15139853 (-) False LOC120574278
TU210145 lncRNA downstream 505330 15003056 ~ 15007022 (-) False LOC120573849
TU210385 lncRNA upstream 4440 15526949 ~ 15527605 (-) True G155232
TU210389 lncRNA upstream 19048 15541557 ~ 15544017 (-) True G155234
TU210397 lncRNA upstream 28495 15551004 ~ 15632836 (-) True G155239
TU210400 lncRNA upstream 31534 15554043 ~ 15554886 (-) True G155242
TU210482 lncRNA upstream 159860 15682369 ~ 15691652 (-) True G155295
XM_039823880.1 mRNA downstream 2388 15507726 ~ 15509964 (-) True LOC120573957
XM_039823872.1 mRNA downstream 6898 15476359 ~ 15505454 (-) True tbcd
XM_039823873.1 mRNA downstream 7252 15476359 ~ 15505100 (-) False tbcd
XM_039825871.1 mRNA downstream 62835 15443124 ~ 15449517 (-) False metrnla
XM_039826254.1 mRNA upstream 7936 15530445 ~ 15534526 (-) True rsad1
XM_039826253.1 mRNA upstream 7936 15530445 ~ 15534277 (-) False rsad1
XM_039825157.1 mRNA upstream 34571 15557080 ~ 15558737 (-) False zgc:103625
XM_039825156.1 mRNA upstream 34571 15557080 ~ 15558668 (-) True zgc:103625
XM_039825320.1 mRNA upstream 82994 15605503 ~ 15645622 (-) False gcgra
TU210305 other downstream 62849 15443164 ~ 15449503 (-) False metrnla
unassigned_transcript_853 other downstream 502012 15009798 ~ 15010340 (-) True LOC120573850
unassigned_transcript_852 other downstream 512208 14998773 ~ 15000144 (-) True LOC120574429
TU210040 other downstream 654795 14851939 ~ 14857557 (-) False LOC120575102
unassigned_transcript_854 other upstream 41624 15564133 ~ 15564204 (-) True trnae-cuc_25
XR_005641871.1 other upstream 195338 15717847 ~ 15724422 (-) False tecra
TU210508 other upstream 221166 15743675 ~ 15744117 (-) False LOC120574537
TU210507 other upstream 224808 15747317 ~ 15749430 (-) False LOC120574502
TU210517 other upstream 290549 15813058 ~ 15815369 (-) True G155323

Expression Profile