RNA id: XM_039823892.1


Basic Information

Item Value
RNA id XM_039823892.1
length 2550
RNA type mRNA
GC content 0.55
exon number 17
gene id ilf3b
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2164720 ~ 2209257 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGGTTTTTCAGATCGTGGGCGTTTCCATTTTCCCACACTTCTGCTGCTGCCGAGAGTCCGGGAGGTAGCGCGTGCAGCTGCCGTCCATTAGCAGTATAACGACACCACGACGGACTGCAACATTGTCATCGGCTGCCGAGaagacattttttaacatcGTCATTCACTGGATATAGGAGTCAACACGGTCTCTACAGCAACAATGCCTCCCCCGATGCGCCACCGCTCCATGCGCGTCTTCATGAACGATGACCGCCATGTCATGGCCAAACACTCGGTCATCTACCCGACTCAGGAGGAACTGGAGAACGTACAGAACATGGTGTCCCACACAGAGAGGGCCCTCAAGGCTGTCTCTGACTGGCTAGATAAGCAGGAGAAGGGAACCTCCAAGTCTGAGTCTGATAGCGCAGAGACGGATAAGGAAAGTGAGCACAGAGATCAGGCCACCCGATCTCTGCGTGGTGTAATGAGAGTGGGCCTGGTTGCCAAGGGCCTTCTCCTGAAGGGGGACCTGGACCTGGAGCTGGTGCTGCTCTGTAAGGAAAAGCCTACCATCAATCTGCTGAAGAAAGTGTCTGAAAACCTTGTTACGCAGCTCAAGACGATCACAGAAGACAAATATGTGGTGACGCAGCACATCCGCGAGGCCAGCATCGTCATCAAGAACGCCAAGGAGCCCCCTCTCACCCTCACCATTCACCTGACTTCCCCTTTGGTTCGTGAGGAGATCGAGAGGGCTGCTTCCGGAGAATCGCTTTCAGTCAACGATCCCCCGGATGTTCTGGACAGGCAGAAATGCCTAACTGCCTTGGCGTCTCTCCGCCACGCTAAGTGGTTCCAGGCTAGAGCTAACGGGCTGCGCTCCTGTGTGATCGTCATCAGGATCCTAAGGGACCTCTGCGCTCGCGTCCCCACATGGGCATCGCTTCGTGGCTGGCCACTGGAGCTGATCTGTGAGAAAGCCATTGGCACAGGGAACCGGCCCATGGGGGCAGGAGAAGCTCTGCGGAGAGTCTTAGAGTGTCTGGCTTCAGGAATCCTCATGCCAGATTGTGCTGGAATCTCTGATCCATGTGAGAAGGAACCCACAGATGCCATCGGCCACTTGGACCACCAGCAGAGAGAAGACATCACAGCGAGCGCACAACACGCCTTAAGGCTGTCGGCTTTCGGACAGCTTCACAAAGTGCTTGGAATGGATCCCCTTCCCTCAAAGATGCCCAAGAAACCTCGTAGTGAGACTCCTATCGATTACACAGTGCAAATCCCACCCAGTACGGCGTACGCCCCACCAATGAAAAGGCCcattgaggaggaggagggaatcGATGACAAGAGTCcgaataagaagaagaaaaagctgCAGAAGAAAtCTCCGGAGGAGAAGGCAGAGCCTCCCCAGGCTATGAACGCTCTGATGAGGCTCAACCAGCTGAAGCCAGGTCTCCAGTACAAACTCATATCTCAGACCGGCCCGGTTCACGTTCCCGTCTTCACTATGGCCGTGGAAGTGGACGGCAAGACCTTTGAGGCTTCTGGTCCATCCAAACGCACTGCCAAGCTGCACGTAGCCGTAAAGGTTCTCCAGGACCTGGGCCTGCCCACAGGAGTGGAACTCAAGACTGAGACGGTAAAATCGGAGGAGGCGGAAGTAGCGGTCACTGTGGAAGAACTGAAGCCAGTTGTAACGGCCATTGAAAGTACCGCTACTGCCGCAGGAACAGCCAACGCAGACGCCGCTAACGCCGAGACTGCTCGCCAACAGGGACCGATCCTCACTAAACACGGCAAGAACCCTGTGATGGAGCTGAACGAGAAGCGCCGCGGCCTGAAGTACGAGCTCATCTCGGAGACGGGCGGCAGCCACGACAAACGTTTCGTCATGGAGGTGGAGATAGACGGCCAGAAGTTTCAGGGGACGGGATCCAATAAGAAGGTGGCCAAGGCGTACGCTGCGCTGGCCGCTTTGGAGCGGCTCTTCCCTGAGGGATCTATGGCTGAGGCagcgaaaaagaaaaaaggaccaCCCATGCACACACCAGGCTTTGGCATGATGGGAGCGCCTGGCGCCGCAGACGCTGCCTTGCCCCGGGGCAGAGGGCGAGGCAGAGGGGGGCGTGGAAGGGGCAGGGGCTTCAATAACGGAGGAGGCTACGGCCAAGGAgGTGGCTTCGGAACATATGGTTACGGGAACAATGCTAACTCCGGATACAGTGACTTTGTCTCAGACTGCTATGGCTACCACGAGTTTGCGACATAAATCCTCCCCccagttttacacacacacacacacacacacacacacacacacacacacacacacacacacaacctgtagagaggagtaaaaaaaaaaaagaaatatggaCAAAATTCTCAGTAGTGTATCCGGCATCATCCTCATCATGAACTCACTTCACCATCAAGTCCGCTCCACCCTGAGGAATGAATGAAGTGACATCGTCTCGCCAGTCCCGCCCAGACGATCGGCCTCCGCATGCATGTAGCCACGAGTCCCCTTCTGTGGATGTACCTGACCGGCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204487 lncRNA downstream 29903 2030990 ~ 2141338 (-) False G151004
TU204527 lncRNA downstream 42389 2127150 ~ 2128852 (-) True G151026
TU204474 lncRNA downstream 45005 2030990 ~ 2126236 (-) False G151004
TU204534 lncRNA upstream 1262 2210519 ~ 2212318 (-) True G151030
TU204536 lncRNA upstream 3698 2212955 ~ 2214142 (-) True G151031
TU204539 lncRNA upstream 16062 2225319 ~ 2225764 (-) True G151033
TU204540 lncRNA upstream 29890 2239147 ~ 2239811 (-) True G151034
TU204551 lncRNA upstream 60713 2269970 ~ 2270192 (-) True G151044
XM_039824602.1 mRNA downstream 9517 2132732 ~ 2161724 (-) True farsa
XM_039825206.1 mRNA downstream 112602 2004876 ~ 2058639 (-) True LOC120574768
XM_039823744.1 mRNA downstream 299149 1845740 ~ 1872092 (-) True LOC120573864
XM_039823749.1 mRNA downstream 349113 1816293 ~ 1822128 (-) False LOC120573867
XM_039823830.1 mRNA upstream 5337 2214594 ~ 2224968 (-) True LOC120573916
XM_039825406.1 mRNA upstream 146185 2355442 ~ 2433220 (-) True si:ch211-194b1.1
XM_039823842.1 mRNA upstream 228845 2438102 ~ 2450469 (-) True pglyrp6
XM_039824144.1 mRNA upstream 528678 2737935 ~ 2750253 (-) True LOC120574080
XM_039824003.1 mRNA upstream 592125 2801382 ~ 2820321 (-) True si:ch211-106h11.3
TU204533 other downstream 9519 2155596 ~ 2161722 (-) False farsa
XR_005641788.1 other downstream 317140 1853642 ~ 1854101 (-) False LOC120573864
TU204241 other downstream 349395 1818724 ~ 1821846 (-) False LOC120573867
TU204260 other downstream 431760 1724122 ~ 1739481 (-) False G150856
TU204258 other downstream 472160 1658877 ~ 1699081 (-) False LOC120574289
TU204768 other upstream 333172 2542429 ~ 2598982 (-) False G151146
TU204751 other upstream 387545 2596802 ~ 2598982 (-) True G151146
TU204905 other upstream 664661 2873918 ~ 2896343 (-) True G151216
TU204921 other upstream 702069 2911326 ~ 2915367 (-) True G151227
TU205089 other upstream 1102470 3311727 ~ 3316915 (-) True G151344

Expression Profile