RNA id: XM_039823969.1



Basic Information


Item Value
RNA id XM_039823969.1
length 1134
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC120574004
representative True

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12746817 ~ 12749160 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCGGTACTTCCGGCAAACAGCCGTTAGTCTCTTAAATTGTCTCTAGACAGCCATGGTTGGAGCTGTGACTGGGACCAAAGCGATATGAATACTAATATTGTTGTTATAAGTAACTATTAGATAAACATGAACAGGAAACGGGCTCTGATTTCAGACACTTTCAAggtgaagaaaagaagaaatggCACGCAGAAGTTTGGAGCTGTCAGTGATGGAGATGGACCGACTGACATCAGATCCACCCTTGAATACCTCATGACACTGTTCCCCAGGAAGCTCTTCAATGACACCTTGCCTCAAATCGTTCTTAAGCACCAGCTCTACAGCATACACAATGACAAGACTTTGGTGGACAAGGAGCTGAATAAACTGCGGGAACGAGGAGAACTGCTGATGTTCCAGCTCGGGTTTGATGCTGACACTTTTGGGCTGGTTTTTGCTTCAGATTACAAGGCCAAAGTGCTGGCAGGAGAGGAGGGCAGAGCGACACGAGCAACAGTGGAGAAGTTTTTGCAAAAATTGCCCTCTCCTTGCACAGACCTGAGCTTCACCAAAGACAAGATGCTCAGGGAGTTCCTCTTCACAGACTCTGAGATAACGCAGTTGGTTAAGTCAGGTGTCCTCACTGTAAGGGATGCAGGCAGCTGGTGGCTTTCCATTCCCAATTCTGGCAAATTCActaagtactttatacaagGTCGTAAAGCAGTCCTCGGCATGGTGAAGAAGTCCAAATATAGTGAAGTCTTAAAGGCAGAGCTAGAGGAGCGGCGAACAACCTCACATGTGAAATTCCACATGAAATACCATATCCATGACATTGTTGGTGCAGAGCTGGTAGAGAGCATACCTACAACTTCAGGGATATTGTTGCGATTTGTTGAGCCCTGAACCACAGCAACAAGACTGAAATCGGTGCTTGGTCGAAGCCAATGAGTGGCTGAAGATTATGAAGTGTTTGTATGAGGACTGTTGGTAAACTAATTTAAGATTTCTGAGTTTGATTCTGTGCCAAATGCATTATAAAAAACCTTGTGGGTTTATGAATTGTCAATTATGTTGACATTATTCTGGTTTTGAGTCATCTTGTAATAAAATGCATATGCATACTGTACTTATGCGCACACCATGGAA

Function


GO: NA

KEGG:

id description
K08880 STK19; serine/threonine kinase 19

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU209226 lncRNA downstream 9354 12735503 ~ 12737463 (-) False LOC120575506
TU209206 lncRNA downstream 67707 12677493 ~ 12679110 (-) True LOC120574720
XR_005641892.1 lncRNA downstream 67727 12677555 ~ 12679090 (-) False LOC120574720
XR_005641890.1 lncRNA downstream 178121 12568219 ~ 12568696 (-) True LOC120574718
XR_005641891.1 lncRNA downstream 179007 12567178 ~ 12567810 (-) True LOC120574719
TU209256 lncRNA upstream 17538 12766698 ~ 12768603 (-) True G154437
TU209257 lncRNA upstream 20249 12769409 ~ 12770122 (-) True G154438
TU209269 lncRNA upstream 29855 12779015 ~ 12781445 (-) True G154446
TU209357 lncRNA upstream 122398 12871558 ~ 12953388 (-) False G154515
TU209363 lncRNA upstream 125200 12874360 ~ 12931319 (-) True G154517
XM_039826336.1 mRNA downstream 9334 12735444 ~ 12737483 (-) True LOC120575506
XM_039825577.1 mRNA downstream 19793 12694885 ~ 12727024 (-) True LOC120575015
XM_039825576.1 mRNA downstream 32119 12694885 ~ 12714698 (-) False LOC120575015
XM_039825065.1 mRNA downstream 181346 12437544 ~ 12565471 (-) False cep112
XM_039823968.1 mRNA upstream 4310 12753470 ~ 12760056 (-) True LOC120574003
XM_039825827.1 mRNA upstream 95236 12844396 ~ 12853731 (-) True cdr2a
XM_039825364.1 mRNA upstream 112192 12861352 ~ 12863585 (-) False si:ch211-139g16.8
XM_039825363.1 mRNA upstream 112192 12861352 ~ 12863585 (-) True si:ch211-139g16.8
XM_039825367.1 mRNA upstream 125216 12874376 ~ 12878214 (-) False LOC120574878
XR_005641884.1 other downstream 181346 12427504 ~ 12565471 (-) False cep112
unassigned_transcript_847 other downstream 1259892 11486854 ~ 11486925 (-) True trnaq-cug_14
TU208722 other downstream 1521271 11203450 ~ 11225546 (-) True G154033
TU208632 other downstream 1609335 11110968 ~ 11137482 (-) False tnrc6c1
XR_005641866.1 other downstream 1666211 11078676 ~ 11080606 (-) False LOC120574486
unassigned_transcript_848 other upstream 93733 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641885.1 other upstream 207362 12956522 ~ 12972810 (-) False iqck
TU209391 other upstream 224172 12973332 ~ 12979685 (-) False sun1
XR_005641817.1 other upstream 586289 13335449 ~ 13421951 (-) False prkar1b
TU209766 other upstream 1301578 14050738 ~ 14057312 (-) False med9

Expression Profile