RNA id: XM_039824006.1


Basic Information

Item Value
RNA id XM_039824006.1
length 1905
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC120574020
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 17696977 ~ 17706966 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCATAGACAGTGGGAAAACCATCATGACGAAGTAGTCGAAGAAGAACAAGGAAGACCGCAAAAAAAAATGCCTATAATTAAAGTCACAAGTTGTCATGCGTACTTAGTATGATAGAAGGGAAGTGCCCTTATAACAGTGCTACATTGTGGCTATCTGTGTCCCGCACTCTCCGCTACACTTCTGTCCTTTTTTGTCAGCTGTTTGCGCATTAAACTGTAACTTAACAGTTAGTAAAGTCAACTTTAGTGGCGCGACTTTGTTAAAATGGGTTCGTCTATCCCAGTCGTTAATGAATGAGAGTCTTCCAGATGTTTAGTTCCAATGAGTCGACAGCACAAAATTACCAGCGGCAAGTTTATATTTAATACATGTATTGCTAGATGCCAGTAAGAAACACACCATGGCAGACAGAAGGACGTTCAACGTTGTGATTTTGGGTGTGgggtttttgttcctttttacCGCCTTCACCACCTGTGGGAACGTTGAAcaaactgTAGTGAAAAGCCTGCAGAATGATACTTTCACTGGGAGTGGCTACCACAGTCTTGGAATAATTTATGGGGTATTTTCGTTCTCCAATTTACTCGCGCCAACAGTCGTTGCAGTAATTGGACCAAAAATGACTATGTTTTTGAGTGGCCTTCTTTACAGTGGGTACATTGCTGTGTTCATCATCCCTTCAACATGGTCCTTTTACCTGACCTCTGTACTGATCGGCATAGGAGCAGCCATGCTGTGGACAGCTCAGGGACACTTTCTGGTGGAAAACTCCGAGGCTTCAACCATCAACAGGAACACAGGGATGTTCTGGGCTCTCCTACAGTGCAGCATGCTGTTTGGCAATCTTTACATTTATTTCGACTGGAATGGAAAAACAGAGATATCAGACAGCAgcaggaaaaacatttttctgtccCTGTTGGTCGCCTCCATACTCGGCACACTCAGCTTCCTGGTGTTGAGAAAGAGCCATCATGAAGACGAGATGCTCTCTGAAGAGGAAGGGCAGGCACTGCTCTCAACTCCTGTGATGTATAAGCACAGAGCAAACACTGCGATGCAGGATGCCAAGTCAGAATTCAAAACCATCCTGCAACTTCTGAAGACTAAAACGATACTGCTCCTGAGTCCCTGCATGGCATACAGCGGCCTGGAGCTATCTTTCTACAGCGGAGTGTATGGGACGTGTATCGGAGCAACTacacagtttggagaagcagctaAAGGCTTGATTGGGATCTCTGGGATTGTGGTAGGCATTGGAGAAATTGTGGGTGGAGGCTTGTTTGGATTGTTGTGTAAGAACAATCGCTTCAGACGGACCTCAGTGGTGTTTCTGGGAATGGTTGTCCATTTCGTTGCTGTCTATTTGATCTTCCTCAACATCCCAGACGATGCCCCGGTTGTCTTTAGTACCACCACCCAACATAAACCATATCTAACTCCAAGTGTATCCATTGCCCTGCTGTGCAGCTTCTTGCTTGGACTTGGGGACAGTTGTTTCAACACACAGCTCTACAGCATATTAGGCTGTGTTTATGCTGGACAAAGCACGCCTGCTTTTGCCATTTTCAAATTCATCCAGTCTGTTTTTGCAGCAGTGGCATTCTTCTACAGCGGTTACCTCCTGTTGAAGTGGCAGCTCCTGCTGATGGTCACCCTGGGCTTCTCTGGAACGCTGTGCTTCTTCGTGGTGGAGAGGATGCAGAACTTCTCGGTAGATTTGCAGGAATATTAGAAAGAAGACATTTCTGTATCGGCAGTGATTGTTCTTTGGGAGGAACTACGGCCATCAGAAAAACAATCTTGTCTTTTTCATTTCACGAGGGGCTATTCTAAAATCTTTTAATATAACACACTTTagataatacatacatacatacatacacacacacacacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211311 lncRNA downstream 84945 17611768 ~ 17612032 (-) True G155907
TU211303 lncRNA downstream 124417 17572233 ~ 17572560 (-) True G155900
TU211294 lncRNA downstream 193784 17502655 ~ 17503193 (-) True G155891
TU211293 lncRNA downstream 194695 17501594 ~ 17502282 (-) True G155890
TU211290 lncRNA downstream 281627 17415106 ~ 17415350 (-) True G155887
TU211366 lncRNA upstream 5841 17712807 ~ 17715701 (-) True G155942
TU211368 lncRNA upstream 5841 17712807 ~ 17713851 (-) False G155942
TU211418 lncRNA upstream 226621 17933587 ~ 17936401 (-) False micall2a
TU211471 lncRNA upstream 276516 17983482 ~ 17983693 (-) True G156026
XR_005641821.1 lncRNA upstream 280814 17987780 ~ 17992027 (-) True LOC120574111
XM_039823884.1 mRNA downstream 349434 17326071 ~ 17347543 (-) True hs3st2
XM_039825940.1 mRNA downstream 431678 17227133 ~ 17265299 (-) True baiap3
XM_039825179.1 mRNA downstream 503983 17181894 ~ 17192994 (-) True gpr146
XM_039823769.1 mRNA downstream 523989 17165482 ~ 17172988 (-) False gper1
XM_039824013.1 mRNA upstream 12498 17719464 ~ 17733285 (-) False zc3h7a
XM_039824012.1 mRNA upstream 12498 17719464 ~ 17733284 (-) True zc3h7a
XM_039823716.1 mRNA upstream 89363 17796329 ~ 17811422 (-) False galr2b
XM_039823714.1 mRNA upstream 89363 17796329 ~ 17811422 (-) False galr2b
XM_039823715.1 mRNA upstream 89363 17796329 ~ 17811422 (-) True galr2b
TU211291 other downstream 281136 17415525 ~ 17415841 (-) True G155888
TU211128 other downstream 661959 17033049 ~ 17035018 (-) False polr3k
TU210878 other downstream 1054846 16569446 ~ 16642131 (-) True G155583
TU210768 other downstream 1437952 16230784 ~ 16259025 (-) False LOC120574432
TU210769 other downstream 1451646 16230784 ~ 16245331 (-) False LOC120574432
unassigned_transcript_855 other upstream 39620 17746586 ~ 17746657 (-) True trnat-cgu
TU211468 other upstream 313045 18020011 ~ 18022964 (-) False psmg3
XR_005642010.1 other upstream 645795 18352761 ~ 18352844 (-) True LOC120575519
XR_005642009.1 other upstream 646397 18353363 ~ 18353446 (-) True LOC120575518
XR_005642008.1 other upstream 647116 18354082 ~ 18354165 (-) True LOC120575517

Expression Profile