RNA id: XM_039824012.1


Basic Information

Item Value
RNA id XM_039824012.1
length 3707
RNA type mRNA
GC content 0.46
exon number 23
gene id zc3h7a
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 17719464 ~ 17733285 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTCGCTCTCCCTCGAGTcaaagtagaagaagaagcagcaaaGGGCGGCCTTCAGCGATACAGCACATCTAGCCAAGTTATTTTAGCTAGAACGAGAAATCACTTTCCCTCCTTTTAGATAACCGACGTAAGGGTTGTTTGGAATAAAGATCCATTCATgtGCTGACAGAGGAGTGGATATTAATACAAACATGTCTGGAGCATGTCAGGACAGAAGGAGTCGCTGGCAGGAGATTCAGAAAGGCCTACAGTTCATCCAATCAACCCTTCCATTTCCTGGAAGTCAAGAGCAGTATGAGGTGTTCATTAAGGATCTCGTGTGGAATCTTTTTGGAGAAGGAAATGATGTGTTTAAAGAAGGGGAGTGGACAAAATCCATCGAGATGTACACCGAAGCCTTGAGTATAGCAGAGTATGCTGACTCGGAAGATATCTGTGTTCCAACACGATTGCTGGAAAAGCTGTATGCAAATCGAGCTGCCGCGTACCTAAACATTGTTCCGGGACTGTATGACCAAGCATTAGAAGACTGTGAAAAGGCTCTCCAGTTGAATGAGGGGAACTACAAAGCGCTGTACAGAAAAGCTAAATCCTTAAAGGAGATGGGGAGACATCAAGAGGCCTATGAGGCTGTTgccaaatgctctctagcagTGCCTCAGGATACCAGTGTCACACAGCTGACTCAGGACCTTGCCAAAATTTTGGGATTGAAAATCCGTAAAGCTTATGTAAGGAGTAAGCCTGCCTTGAATGTTTTGAGAGGATCAAATTATCAGGATGCATCATGTGACAAGTTTTCCCATGGCTCTCCTTCAGTTGAAGATATAGAAATTGAAGTGCCTCAGCTAACCCAGGATAGCAGTGTTTTGGCTCTTGCCCCAGCTCCAAGCCAAGCTCCAGTGGCCGTGCACCCGGCTCTAAATGAAGCAGTGGTGGATGAACTTCTTCCTAAAAACTGTATCTCGTCTGTATCCCTGTCTGAGCCGCCAGGCTTCGAGTCCGTTTCCAAGCCTGTATCTGTATCCACGTCGGTCCCCCTTCCCGTGCCCACATTTGTTAATGGGTGCAGAACCAGTAAGCCTTGTATGATGCTTGAAAGTCAAGATTTTGACCCAGACATCATTGGGGACGACCTAGATGATCTACTGGACCAAGCTGGCCCGGAGTCAGCCATGGTTATACCCACAATGAAGGGGCCTCTCCCTCTGCCAACCAGTATTGCCTCGGGCAGTTCCATGTCGAGTTCATTCCTGATGCCATCTCACATCAACCCATTTCTCCACAACAGTACCCAGCAGTGCACCGTAACTCTGCCCCCGCTGTATCACAAGTCGGGGTCAAGTACGTATTTTGGTATGGACACTTTTGACGCCCTCCCCCCACCACTGGACTCCCTGGATAGTCTCACCATGAACGACTATAAAACAGATTATGCTCAGAATCCATTCATGCCACAGCTGAACAATAATGAAACTCCAATGGGAATGGCTGTGGGTATGCCTGAAGTGAAGGGTCTTCCTGCTGCTGTAGACTTAGCAAAGAACCCCTTAGCTGAAACGCATGAATTCAAACAAGCGTGCTCGGTCTGCTACGTTAAAACtgGACCCGGTGTGTTGGATTACACACTTCATACAGAAGAGCATAAATGCAGAAAGGACGCTTTACTTGGCCGAATCAAACATTCGCCAGACAAATCGTGGAAGCTCATTCGGCCCAGACCAACAAAAACCCAATATGTTGGACCTTATTACATTTGCAAAGAGGTGGCTATTGGAAAAGAGTGCCTGTACCCTGGCCACTGCACATTTGCATACTGCCAGGAAGAGATTGATGTTTGGACGCTGGAGCGGAAAGGGTTCATCTCCAGAGAGCTACTCTTCGATCCTTATGGGCCCAACTCCAACATCAGGTTGACTGTCCCCAAGATCTTACAGGAGCATCATGGGATATTCATGTTTCTCTGTGGAGTGTGCTTTGACCATAAACCCAGAATAATCAGCAAAACCAACAAAGATGACTCATCACTTTGCTCTCATCCAGTGACCAAGCATGACTTTGAGGATCATAAGTGCCTGGTCCACATTTTGAAGGAGAACACAGTCCGTTATTCCAAAATCCGACCGCTGAGTCCTCAGTGCCAGCTGGATCTTTGTCGCCATGAAGTGCGCTACGGCTGCGTAAGAGAGGACGACTGCTTCTACGCCCACAGCCTCATCGAGCTGAAGGTCTGGATGATGCAGCACGAGCTAGGTATCACTCATGAAAGTATTGTCCAAGAGGCAAAGAAGTTTTGGAATGCAACAGCGTCGTTGCAGGGAGCCCAGCAGCTTTCCAGTGCACAGAGAAGGTTCGGGCCTCCAAATCTGAAGATGATGTTTGTTTGTGGCCAGTGTTGGAGAAATGGCCAACTAAGTGAAGCTGACAAAAACAAGAAGTATTGCTCAGCCAAGGCGAGACACACaTGGGCAAAAGACAGGCGTGTGGTGCTTGTAAGTTCCCATGAAAGGAAAAAGTGGACAACAGTTAGACCACTTCCAACCAAAAAACCCATCCCATCTCAATTTGAGatTTGCATGCACGTGACAGCTGGCAAAAAGTGTCAGTACATTGGGAATTGCACATTTGCCCACAGTGTAGAAGAAAGAGACCTTTGGACCTACATGAAGGAAAACAACATTCCAGATATGGATCAGCTTTATGAGCAGTGGCTGCAGTCCCAGAAGCCTGGCTGGGGCGAGGAGACCTCCAATAACTCTGTCAGGGAGAATGGCAAACAGATCCACATGCCAACAGACTACGCTGAAGAAGTGGCTGGGAATCACTGTTGGCTGTGTGGTAAAAACTGCAACAGTGagaagcagtggcagcagcatattacttcagaaaaacacaaagacagagttTTCAACTCTGAGGATGATCAGAACTGCTGGCAGTATCGGTTTCCCACAGGAACTTTCAAAGTTTGTGAGAGGTTCCTCAAAGGCACATGCACAGAGGATGAGTTGTGTAAGCTGGCACATGGGGAGCAGGAACTAAAAGAGTGGATGGAGCGCAGGGAATTCCTTTTGATGAAACTTGCCAAAGCCAGAAAAGACCATCTTATAGCACCAAATGACAATGACTTTGGAAAATACAGTTTTCTGCTTAAAGACATTATATAATGATGTGACGACAATATTCATGATGTGATGACAATATTCATGCTCAGTTGCAAATAATGCAGTATTCAAACAGTCTAGAGTCAGGTGATCCTCGAGGGCCTCCTAGGTGCACAGGAAACTGCCTGATCACAGCATGATTTTAAAGAGCGGGTTCAGGACCGGCCCTCTGATTGGTGGCTGGATTACTCTCATCTGAACTACAGAAGTGTTATTGTTAACAACTAAATGAGTGGGAGATACTTGTAAGCTTTGCTATGCCCCATTCATTAGAATATCTGAAAATGGTGCTGAAAATAGCATGCGTGAACCTTGATCAGAGATGTGTTCAGATACTGTTGACAAAGTAATTTCGTCTCATAAGCAGTTTGTATATGTTAATGACCTTtactttaaatatgttttaagtATGGAATACTTAAATTGAGAGTTCAGTTGACACTCTTATTTTAAATTGGTCAGCATAGGTCATTTTCCCTTTCCATTTATCTAATATGTTACCAGTGTAACAGGCACCACACCAAATAAAGCTTCTTTTCTTAA

Function

GO: NA

KEGG:

id description
K24945 ZC3H7; zinc finger CCCH domain-containing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211366 lncRNA downstream 3763 17712807 ~ 17715701 (-) True G155942
TU211368 lncRNA downstream 5613 17712807 ~ 17713851 (-) False G155942
TU211311 lncRNA downstream 107432 17611768 ~ 17612032 (-) True G155907
TU211303 lncRNA downstream 146904 17572233 ~ 17572560 (-) True G155900
TU211294 lncRNA downstream 216271 17502655 ~ 17503193 (-) True G155891
TU211418 lncRNA upstream 200303 17933587 ~ 17936401 (-) False micall2a
TU211471 lncRNA upstream 250198 17983482 ~ 17983693 (-) True G156026
XR_005641821.1 lncRNA upstream 254496 17987780 ~ 17992027 (-) True LOC120574111
XR_005641822.1 lncRNA upstream 254496 17987780 ~ 17992022 (-) False LOC120574111
TU211508 lncRNA upstream 402806 18136090 ~ 18139609 (-) True LOC120574888
XM_039824006.1 mRNA downstream 12498 17696977 ~ 17706966 (-) True LOC120574020
XM_039823884.1 mRNA downstream 371921 17326071 ~ 17347543 (-) True hs3st2
XM_039825940.1 mRNA downstream 454165 17227133 ~ 17265299 (-) True baiap3
XM_039825179.1 mRNA downstream 526470 17181894 ~ 17192994 (-) True gpr146
XM_039823770.1 mRNA downstream 546476 17165482 ~ 17172988 (-) True gper1
XM_039823716.1 mRNA upstream 63045 17796329 ~ 17811422 (-) False galr2b
XM_039823714.1 mRNA upstream 63045 17796329 ~ 17811422 (-) False galr2b
XM_039823715.1 mRNA upstream 63045 17796329 ~ 17811422 (-) True galr2b
XM_039826199.1 mRNA upstream 103190 17836474 ~ 17840960 (-) False zfand2a
XM_039826200.1 mRNA upstream 103190 17836474 ~ 17840960 (-) True zfand2a
TU211291 other downstream 303623 17415525 ~ 17415841 (-) True G155888
TU211128 other downstream 684446 17033049 ~ 17035018 (-) False polr3k
TU210878 other downstream 1077333 16569446 ~ 16642131 (-) True G155583
TU210768 other downstream 1460439 16230784 ~ 16259025 (-) False LOC120574432
unassigned_transcript_855 other upstream 13302 17746586 ~ 17746657 (-) True trnat-cgu
TU211468 other upstream 286727 18020011 ~ 18022964 (-) False psmg3
XR_005642010.1 other upstream 619477 18352761 ~ 18352844 (-) True LOC120575519
XR_005642009.1 other upstream 620079 18353363 ~ 18353446 (-) True LOC120575518
XR_005642008.1 other upstream 620798 18354082 ~ 18354165 (-) True LOC120575517

Expression Profile