RNA id: XM_039824016.1


Basic Information

Item Value
RNA id XM_039824016.1
length 1671
RNA type mRNA
GC content 0.43
exon number 1
gene id rprml
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 19747311 ~ 19748981 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAATAAATTAAAGGTAGACTGAATTACAGATTAAGACTTGTTCAAATaaagttttctttctttctctttttttgcacatCAGAGCAGCAGCGAATAATCTGAGGACCTCTGACTACCTCCCCTGGTGAAGAGTGGTGGTTTGGTCAACGGGGAACTCATCATCACTTTAAAACGCACCACAGACTTGGCACAAAAGAAGCGCTCGCAGGCGAACACAGGCGCAAACAGTCTTGTCTGACTGTCTCTTATTGCAACGAAGGAAAGACGTTTTGCACCTTGCGCACTATCTAAGAAGACTCACTTAAAGTCAGAGAAACGTAGACTTTGAGTTGAAACTTACTTTTGGCTGCACCTGATGCGACACTGTTTGACTGCAGTCCGGTGATGTGGATGAGGTCATAACGCTGAGGCTGTGGCAAAACCCGTTGTTTTCCTGTAGAGCTGGACTTTACAAGCgtattatttttgtgtttcttcCTCTTATTTTTGTCTGAACAGTCATATGACGCAAAGTTTTACTTGGAGTCCAGGTTTTGTGgcgagactgtgtgtgtgtgcctgtcctAGTGGAGTCTTTTTGCTGATAACCCGCAAGGAATCATGAACTTCTCCTTGTTCGACTTGACCCAGGGCGCGCTGTTTAACGGTAGTCAGACCCTCGCCGGGACTTTGGCGACATATTCCGGCAATGGAACCGACAACGTGGTGACCGGCGACGGCGGAGGGTCCCTGGTGTTGGTGCAAGACGAGCGCAAACTCTTCGTCATGCGTGTGGTGCAAATCGCGGTGCTATGCGTGTTGTCGCTTACCGTCGTGTTCGGCATATTTTTCCTCGGGTGTAACCTGATGATCAAATCGGAGAGCATGATTAACTTCCTGGTAAAGGACCGGAGACCCTCTAAAGACGTGGAGACGGTCATGATCGGGCTCAGGTAGAGCACGGTGAGCAGGTACTGTGGAGAACTGCAGCGGAGATCCGGTGCGAGGATCTGATGCACGTTTCCTGTGCCGCAGGTCAAGTCTGTCTCTGCATGTACTACTCAAAGACGCCCCATCTGTTTATTAGTGAGGAAAGATATGCAACAACTTTACATTTCCTTCCGAAAAACGACTACAGGAAAGTAGTCCAGTGACCAATGTTCGTGCGTAAAGTTTGTGCGTAAAACACGGGAAATTGTTTACACGTGGGCCGATCTGTTGAATCTTTTGAGTGAATTTAATGTTGCCAAACTgaacagtgacaaaaatgtttacAAGCTTTTACCTCATTTTTTGTTtagttaatttttatttttttgtaaatttgaaatgattgttcatgaatatttttaaaactgtcaaaaagcATGATTGTGCATTCTTATAGTTCCACGTCTTCCAGTGTGCTATGTGGACGTGATGGACATGTGGATATTCTCTATACAAAGTATTTTTCTTGGTATCGTTTGGTAAATACACTCTAAATACTGAAATCTTGCACGTTTTTCAACAAACTCCGTCCTAGCTTTATGGAGTGGTTCTGGTCCTGTTTGGCATGCTCGCTTATTGGTCTGTAAAGTGATTTTTGGACCTGTTTTGCACTTTTGAAATCACTGATGCTGCATGAATTATTTTGTACCAAATAAAAACTTTGCAGCATGCAATTAAAATTGAAATTACCATATAAAGCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212131 lncRNA downstream 19939 19666930 ~ 19727372 (-) True G156504
TU212139 lncRNA downstream 38003 19707030 ~ 19709308 (-) True G156510
TU212067 lncRNA downstream 178811 19568276 ~ 19568500 (-) True G156466
TU212024 lncRNA downstream 223320 19432371 ~ 19523991 (-) True G156430
TU212042 lncRNA downstream 268386 19478509 ~ 19478925 (-) True G156446
TU212200 lncRNA upstream 183681 19932662 ~ 19936556 (-) False G156562
TU212204 lncRNA upstream 187296 19936277 ~ 19941892 (-) True G156562
TU212210 lncRNA upstream 201410 19950391 ~ 19952982 (-) True G156567
TU212254 lncRNA upstream 219951 19968932 ~ 19972503 (-) True G156595
TU212314 lncRNA upstream 424517 20173498 ~ 20174463 (-) True G156631
XM_039824015.1 mRNA downstream 3809 19731367 ~ 19743502 (-) True LOC120574025
XM_039823647.1 mRNA downstream 73628 19668447 ~ 19673683 (-) False LOC120573806
XM_039823648.1 mRNA downstream 74369 19668447 ~ 19672942 (-) False LOC120573806
XM_039823649.1 mRNA downstream 74881 19668447 ~ 19672430 (-) True LOC120573806
XM_039823784.1 mRNA downstream 123560 19607886 ~ 19623751 (-) True fbxl20
XM_039823888.1 mRNA upstream 118080 19867061 ~ 19900525 (-) True rnd2
XM_039823886.1 mRNA upstream 192986 19941967 ~ 19947921 (-) False si:busm1-163l24.3
XM_039823885.1 mRNA upstream 192986 19941967 ~ 19947921 (-) True si:busm1-163l24.3
XM_039825965.1 mRNA upstream 298176 20047157 ~ 20079017 (-) True LOC120575253
XM_039825982.1 mRNA upstream 353059 20102040 ~ 20113445 (-) True st8sia6
TU211982 other downstream 496055 19249726 ~ 19251256 (-) True G156396
TU211888 other downstream 626379 19108899 ~ 19120932 (-) True G156321
XR_005642008.1 other downstream 1393146 18354082 ~ 18354165 (-) True LOC120575517
XR_005642009.1 other downstream 1393865 18353363 ~ 18353446 (-) True LOC120575518
XR_005642010.1 other downstream 1394467 18352761 ~ 18352844 (-) True LOC120575519
TU212205 other upstream 196607 19945588 ~ 19947890 (-) False si:busm1-163l24.3
TU212206 other upstream 196607 19945588 ~ 19947890 (-) False si:busm1-163l24.3
unassigned_transcript_859 other upstream 271236 20020217 ~ 20020288 (-) True trnac-gca_26
unassigned_transcript_860 other upstream 422306 20171287 ~ 20171358 (-) True trnac-gca_27
TU212545 other upstream 1320045 21069026 ~ 21071488 (-) False atxn7l3a

Expression Profile