RNA id: XM_039824026.1


Basic Information

Item Value
RNA id XM_039824026.1
length 5522
RNA type mRNA
GC content 0.52
exon number 24
gene id llgl1
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6607284 ~ 6649259 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGCaacccgcagcagcagcagcagcagcagcagcacccgcAGCCCCGCTTTCAGCCTGCATGGGCTACTCGGTTAGCTAGCTTAGCATCGTCCGACTGCGCTGCACCGCTTCTCCAGCCGCCGAGAACCCCGGGTTGTTATCTCCGTGTTTTCCTCTCCGTCCCACCCCCAGTCCTTGCCTGCCCACTGCCCGGCTTCAAGATGATGAAGTTTAGGTTTCGTCGGCAGGGCACCGacccacagagagagaagataAAACAGGAGCTTTTCGCCTTCAACAAGACTGTGGAGCATGGGTTCCCTCATCAGCCCAGTGCTTTGGCCTTTGACCCCAAGCTGGAACTTATGGCCATCGGGACAAAGTCAGGAGCCATCAAAGTCTACGGGCACCCTGGTGTGGAGTTCACAGGACTACACAAAGACACCACCGCTGTCACACAAATCCTCTTCCTGCCTGGACAGGGCCGCCTGCTGTCGCTGCTGGATGACAACACAATCCACCTGTGGGAGCTGGTTGCCGGCGCCCCTGGAGAGGTGGGCGGGGTTAAGAGAGAAGGCGTGGTCTGTCTGCAGGAAGTGGACAGCTACAGCCTCCCAGGAAGACCTGGCATCGAGAGCTGCAGTGCCACGCGGGTGACAGTCCTTCTCTTGCTGAGGTCATGCGATCTGCTGTGCATGGGAACAGAGGGAGGTGGCGTGTACTTCCTGGAGTTGCCCCGCCTCTCACTGAAGGACAACCAGACGCTTCTCCAGGATCAGGTCACACTGAGcctGCCAGATGATTACAGATGTGGGAAATCCTTAGGGCCGGTGGAATCTCTTCAGGAACATCCTCAGCAGTCAGGGaagattctgattggctacagCCGGGGCCTGGTGGTCCTATGGGATCTGAGCACCCGTCATACAGAACAGCTATTCCTGGGCAAGCAGCAGCTGGAGAGCCTGGTGTGGGAACGCTCTGGAAACTTATTTGTCAGTTCCCATAACGATGGGGGCTACTCCGTGTGGGCTGTTACTAATGGCAACGTCTACAATCACCAGCCGGTGTCCTCCACCATCCCATATGGTCCATTCCCCTGCAAGGCCATCAACAAGATCTTGTGgagaacaacacagacaggCTCTCCAGTATTGTTATACAGCGGAGGGATGCCCAGAGCCAGCTACGGTGACCGCCACTGTCTGACCATTCAACAAGACAAAGACCACGTCACTTTTGACTTCACGTCCCGAGTCATCGACTTCTTCACTGTCCACAGCATAGATCAAGAGAAAGAGTTTGATGAGCCGTCTGCGTTGGTAGTGTTACTGGAAGAGGAGCTGGTCGTGATTGACCTCCAGACCCCCGGGTGGCCCTCTATGCCCACCCCCTACCTGGCTCCTCTCCACTCCTCAGCCATCACCTGCTCCTTCCACATCTCCAGCGTCCCCCCCAAACTCTGGGAGCGGCTAGTCAACGCTGGCAAAGCACAGCAGGGCCGGCAACACGCACACGGGaGTTGGCCCATTTGTGGAGGTAAAAACCTGGCTCCTCCACCCAAACAGCAAGAGCTGCTATTGAccggGCATGAGGACGGCACTGTGCGTTTCTGGGATGCATCAGGTGTTGCTCTCACTCCGATGTACAAACTCAGCACAGCCAATGTCTTCCACACCGACTGCGACCCTTGCGACGATCCTCAGGATGCTAGCGACGACCCCGACatgcagcaggaggaggaatgGCCTCCCTTCAGGAAGgtggGCTGTTTTGACCCATACAGCGACGACCCCAGACTGGGCATCCAGAAGATCAGTCTGTGCAAATACAGCAACAAGCTGGTGGTGGCCGGAACTGCTGGACAGGTGATTGTTCTGGGTCTGAGTGACGAGCGTTCGGACCACTTGGTTGACGTGTCGGTGGTTGATCTACTGCAGGACAGGGAGGGCTTCACCTGGAAGGGCCATGACAGGCTGGAGCCGCGCCTTAAACCCGCCCCCTTCCCTCCCGGCTTTCAGCCACTGGTGCTGGTGCAGTGCCTGCCCCCGGCCTCTGTTACGGCGGTGGCGCTGCATGCTGAGTGGAACCTGATCTCCTTCGGGACGAGTCATGGATTCGGCCTGTTTGACTACCACAGACGAAATGCTGTGCTCGCCAGGTGTACCCTGCACCCTAATGACTCCTTGGCGATGGAGGGCCCCCTGTCCAGAGTCAAGTCCTTGAAGAAGTCCTTACGACAGAGCTTCAGACGCATCCGCAAGAGCAGGGTGTCGGGGAAGAAacgcaccatcaccaccacaccCACCAGCAAGGTCCAGGAGGCCAACGCTGCTCTGGCAGAGCAGGAGGACGTGGCTCCGATACAGCGAAGGATTGAACCCCGGTCAGCAGACGACTCGCTGTCTGGAGTGGTGCGATGTCTCTGCTTCGCTGACACCTTTCTCCGTGACGGTACACACCATGGCCCCACACTATGGGCGGGCACCAACTCAGGCAGCGTGTACGCGTACGCTCTGGAGGTGCCCGGCGTCGGTTTGGGGCGTGCGTGCGAGCGGGGCGGAGCGGGCGAGAGCAGTGTGTGCGTGGAGGCATTGTTGGGGAAAGAGATCCAGCTGATGCACAGGGCCCCCGTGGTGTCGATTTCTGTGCTGGACGGCCGGGGGAAACCGCTACCGGACCCGTACGAAGCCTCCCAGGACCTCGCCATCGCGCCGGAAATGACCAACGCTCACTCTGTCCTCATCGCCTCAGAGGAACAGCTAAAGGTGTTCTCCCTCCCCAAGGTGAGCGCTAAGACCAAGTTCAAGCTGACGGCGCACGAAGGCTGTCGGGTGAGGAAGGTGGCCCTGGTGGTGTTCAGCTCCACAGCTCAGGAAGACTACAGCGAGCACACACTGGTCTGTCTGACCAACCTGGGTGACATGCACCTCTTCAACATACCTGGCCTCCGACCACagGTGCGCTACGACTGCATCCGCAAAGAAGACATCAGCGGCATTGCGTCCTGTGTCTTCACCAAGAACGGACAGGGGTTTTACTTGATCTCTCCCTCAGAGTACGAGAGGTTCTCTCTGTCTGCCAAGGTCTTCACTGAACCGCTCTGCTCTGTTCAGCTGGACCGACCGCTAGAGCCCACACCTGCCAGCGATGGTATGACGACGCAGCCTCAGGCCAACGGAACCCACAAGAACCAGATGGGTCAGGCTGAGGGGCAAACAGAAGAGCCTCCGAGCTCCCTGTCCTCTCCCATCCTGGACACCCCACTGGACTCCCCCCTCAGCTTTGCTGACCTCACCCTCGACTCGACCGGAGAAATCACTGCGGAGGACGTCAGGGATTTTCTAACCACTGTGGACGAGGCAGAGAATAACCTGAAGAACATtaaagaggaggagggacgCTCGACTGGCATCCTCATTAACTGAACAGGGACCGGCGCGAATGGTTTGGATGGACTGGATTTCAGTGCTGGACCACAAACATCTCCCATCATCCCACTGTGGAGCCCCCAGCCAGCACTCTGCACTCTCCTGTTAGCTTGGCACAAACTGGGAGGAAAGCCTTCATACGGACAAAGAATACAACATTAAAGACTCTTAATTGTTGGTTGAGCTACATCTTCTTCTTATATAACCACTTTGGAAACATGACGTTGCCTCCCACATGGAACTAGAGACAGCCTACCCAGCACGCCGTGGCGCCTGGATGGACTTGGAGCAAATGATTCTGATTTCAACCACTGAAAACTGAACTTCCCGCCATCCATCTTGGCGCTCTGTGTGGTCATTCCTCCTTGGCCTTTCTTCCCGTGGTGAACCGATGGTTATGAAGCGCTCTCGAGGCGGAATGACTGCGGCTCAGCCTTCGAGGAAAGCGCTGTTAACGTCCCGCATTAGGAGACTTACCAGTGAcgtttctgtgttgtttttttatttttctatccaCATTTTTTTGGCGTGCTTGGATCGGTCTGAGGTTTTCCCCCACAGTTGGAACTGGAATTGGCGCACAGTCGCCAAACGTTCTTGTTGATTCCTCGTGCACACTAGTGGATGTGTTGGATTGTTTTGCACGCTGCTTAACACCACCAGAGCCCTGTGAATGACCCGTGTTTATGAAATGAGGATATCCAGCAGAGACTGAAAGGGATTATTGTGAAGTTCAAGAAGACTAGGAAATGAAGTATTTTGAATATTTGAGTGTTAAAGGCTGTACAATTTGCATTCTTCCCCCCCCCTTCTGCCATTAGGTACAGTTAAATTACTTCGCCCAGTGTCCTAAGTGAGCCGTGGCGGTGCAGAAATCGACTGTTTTGACATCTGTGGGCCGATATGTAAAACACAAGCACATCACCGCCAAGGTTTTAAGAAGCTCTCGGTCTACTCTCTTGGTATTGAAGAACGAAGTACTTGGAAATGAAGGCGTTTTGTAATACAAAGAATGATGTTCTATCACATATGTTTTGTATGGCTTTTGGAGAAAGTAAAGATATTTTACTGACGAAAAGAAAGGGGGGGGATGCAAGAGGAAATGATTCACACCAATTTCAAAGGGAACCAACTGGGGAAGAGGGAAGCGAAGGCGGTACAATGTATGAAGGACTAGAGCAGATTTTCAAATACCTTTTTATTGTTAAATACATGGCCCGAGTTGCAAATAAATTCTTTATCTTTCAGTCAAAATTTGATGAATTCAGTTTTTATCAGGCAAGAGCTCAGAGTTCACTGTAATCAATGTTGTAGTTTGGTCAAATCTTAAGGATTGAAGAAAAGATGAGCGTTCTcagtgattaaaaaataaaaataaacagaagGTAAAGAATGTGGTGAAATGGATGAGTTGTTACATCCTCCCTCCTTAGATCATCTCATGCAGAATTCTTGTTGACGGGACTCAGGGAAGTGTGGCAAGGGAAGCTAAGTCAGTCTGAATGCTAAGTGTAATGTACTGTGTACTGTGATGCACCCAGGAGATTTCTTTTGTGGGTTTCTGTGAATcggtgcattctgggtaataTTGGCTAGATGCACAGCTTTGATCACCAGtatttttaaccctttaaaaaaaaaaaaaaaaaacgttttactgtgtaaaaagaaaatatatatatacagtatctatacCTAGGTTTACAGAAGACAGGTTTATAACGGCAAGCCCATGATAGAGTAAAATGGTCGAACTTTGTAGAACCTGTCACAGCCTAAATAACCGCTCAGTATTCCAGCTTTTTGATCACCTCActtaaaacaaaatttaaaaaagtaaaaagggaCCTCACTACTAACTAACTAAGCTCAACAGGTAGAAATCATGTTAatgctttttcacttttgtgtTAGCTTATTTGGTGCTCTGGTTGACTAACTAATTAACCCTTGATGCTACAGCTGGCACGATTTACCATTTTTTAATTCTACAGTTAAGATGAATTAGTTTCTATTTTGTCATTCAGTTTTGTGTGTAGGATTTTAATCAGGTCATTTAGCGTTTTGGCTGATGAAGAATTGTGAAtgttaataaaaatgatttactctA

Function

GO:

id name namespace
GO:0003407 neural retina development biological_process
GO:0008593 regulation of Notch signaling pathway biological_process
GO:0048919 posterior lateral line neuromast development biological_process
GO:0016323 basolateral plasma membrane cellular_component

KEGG:

id description
K06094 LLGL; lethal(2) giant larvae protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206674 lncRNA downstream 8408 6597999 ~ 6598876 (-) True G152560
TU206672 lncRNA downstream 9441 6597354 ~ 6597843 (-) True G152559
TU206660 lncRNA downstream 179048 6427328 ~ 6428236 (-) True G152548
TU206606 lncRNA downstream 215686 6387165 ~ 6391598 (-) True G152497
TU206604 lncRNA downstream 226093 6380875 ~ 6381191 (-) True G152495
XR_005641813.1 lncRNA upstream 60143 6709402 ~ 6711199 (-) True LOC120574035
TU206694 lncRNA upstream 107532 6756791 ~ 6757085 (-) True G152577
TU206823 lncRNA upstream 123621 6772880 ~ 6773713 (-) False arhgdig
TU206870 lncRNA upstream 363988 7013247 ~ 7013685 (-) True G152720
TU206859 lncRNA upstream 372210 7021469 ~ 7038559 (-) True G152712
XM_039825759.1 mRNA downstream 22259 6576144 ~ 6585025 (-) True desi1a
XM_039824585.1 mRNA downstream 257020 6345320 ~ 6350264 (-) True ccdc97
XM_039823846.1 mRNA downstream 362865 6229363 ~ 6244419 (-) True baiap2l2a
XM_039823670.1 mRNA downstream 438266 6155299 ~ 6169018 (-) False csf2rb
XM_039824028.1 mRNA upstream 1570 6650829 ~ 6698387 (-) True myo15aa
XM_039825833.1 mRNA upstream 62365 6711624 ~ 6718897 (-) True drg2
XM_039825832.1 mRNA upstream 62365 6711624 ~ 6718893 (-) False drg2
XM_039825287.1 mRNA upstream 88852 6738111 ~ 6748409 (-) True znf598
XM_039826238.1 mRNA upstream 101007 6750266 ~ 6756280 (-) True slc25a17
TU206522 other downstream 379170 6182408 ~ 6228114 (-) True G152441
TU206279 other downstream 993616 5574680 ~ 5613668 (-) False atp5mf
TU206278 other downstream 993616 5610556 ~ 5613668 (-) False atp5mf
TU206260 other downstream 1024423 5580368 ~ 5582861 (-) False bud31
TU206270 other downstream 1053034 5549318 ~ 5554250 (-) False top3a
TU206683 other upstream 70525 6719784 ~ 6720643 (-) True G152567
XR_005641918.1 other upstream 1432879 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 1791920 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 2082138 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 2163083 8812342 ~ 8816276 (-) False natd1

Expression Profile