RNA id: XM_039824085.1


Basic Information

Item Value
RNA id XM_039824085.1
length 2415
RNA type mRNA
GC content 0.45
exon number 7
gene id pdgfab
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13324235 ~ 13343615 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGACTTTCATTCACTCCAGAGTCCTACATAGTCCAGGACCTGTGCAGACGGCTGCAAGACAGGCTCTGAATAGCACAACACGGACAACTTTCTCCCTTCTGATATTCTAAGAGGATCTGCTCGTTGGGATTATATTCGTCTAGGACTATTAAATACTATTATAGAAAAAGTCGTGCGTCTTAATTCTGTTTAATTATAACAGCTTCGCTTCTTGTTTGATATATTAGTAAGCTGCAGCTGCAGTTTAAAGCCTGTTTTTTAGAGGGTGAAGGACAAGTGCAATGCGCTTCAGACTTGTCTCTTGGGATTGTCCCACTTGCGCCTGAGGAGAGCTATGTCGAGCTGCCGCACAGATTTTGTTCAAGAGGACGCAGTCCAATGTGAATAACAAGAAGCAACTTCCAGCCTCTTCAGCTTTTCATAGTTACAAGCAAGTGCAGCACGGAAACTGACTGAGTCCGCTGAGCAGCTCAGACACCCCTGTTTCTCTCCCCGAGGGGATGGTTGTGGATCCTGTGGGGCCAGGAGCGATTCTGCGGCTCCTACAGAATAGCACCTTTTTCTTGTTCGGGGTTAAATCGAAATTAAAGGGAGATGAGAGCCGCACTTTGTTACTTCCTGCTGTGGACGACGTACCTGCTGCTGGCCACCTCTGAGgAAGTGGAGTTTCCCCAGGAGCTGATAGACAGGCTGTCCCACAGTGAAATCCACAGCATCAGCGACCTCCAGCGGCTACTGGACATTGACTCCGTAGGTACGGGAAACAATGTTATCGAGGAGCCCAAGCACCACAAGCACCACAACCACCATAAGAACTACTCCCGCCAGCATGGTTACTACAATGACCTGAAGAGCTCCCAGCTCCACAGCCGACGCAAGAGGAGCATCGTAGAGGAGGCGGTCCCGGCGGTGTGTAAGACGCGGACGGTGATCTATGAGATTCCCAGGAGCCAGGTGGATCCCACGTCTGCCAACTTCTTGATATGGCCGCCGTGTGTGGAGGTGATGCGCTGCACAGGCTGCTGCAACACGAGCAACATGCGCTGTCACCCTTCCCGCAAGCACCACCGCACCGTTaaggTAGCAAAGGTGGAGTACACGAGGAGGAAACCCAAGCTGAAAGAGGTCTTTGTGCGATTAGAAGACCACCtggagtgtgtgtgcacaccGCAGCATCATGTTGTGGAGCACTCAGATACAGAAACAGGCCACCATAGGGCTAAAggtaaaaaaaggaaacctaaAAAGCTAAGGCCCAGCAAGGATTTATTGGCGACATAATAAAGTTGCACTCATTACCCAAAGTCCACTGGAGAGCTGTGAAGGGAACAGtGGATGTGAGGTGAGACCAATCAGAACAAGGGACTTCAGCGTGGGAGGGACCTAAATAGAGGATGCCACCAACAGGAGACCTGCTCTGTCCTCTTCCCCACTGCCATGCAACCTTCGTTTTAAAAAGACAAACTTTTCTGTTAAGACGAGAGACTGAAAATAGCCaacagacaaaaataaataagatgcCAAaggtgcttttttttaaaacagtaacCAGGGATGTCGACTTCCTCTGTGGTACGTCACCTACCCAGACAACTGAACCATGCCGCTgaataagaagaaaagagaaagatgcTGTAACTCGGGCAGGGCAGAAAGAGACCGAAGGGAGATGATGAAAGCGATTTGTGTTGAACATTTTGAGACTTTGTTTAAACAAGACGCACAAAAAGAAACTGCTATGAAACAGTTGAATCAAGCTTTCGTGGGAATCTGGTGCTCAGACTCCAAAACAGCGGTGGATGACCTCCAGCTGGGCAACATAAAAGTGCCCTGCTCTGTTTAAATGACTCTTGCATAcacaggaaaaaagaaagagatataggaaaaacaatggaaagagagaaagagagagacaaatggagatgttttttttcttccaaaagaCTCTATGGAGTATCAAACATTTATAGTTTTGGATGTTTGCTCTGAGTAAAGAGGGACTCTTCTCTGAGACCCCTGGTGGTCTGTGACTTTGCCCACTTGCTATGTACAGTTAAAGTTGAAAAGTAAGATGCATCGCTACTTACAAACTATTTATATGTGTGGACGTTTGCTTTCTGTCTCTTCCAGtacaaaagaaagaacaaaaatatgttttaatgatTTTGGAGACATGCAAAAGCTCTGTGTGGTTTGGTTCTTTGTAACCATCAGTATCACAATCTCaacgtcattttttttttagtcgaTGTTATTGTTGTCATCCATGTTTCTtattatattacagtatatctGAATGATGTCAAGTCTTGTATATGGTTTGGATATATGTGTGCAAGGAGGAGATGTGAGAGTCAGTACAGGAAGATGCTTTATTTTTGTTATGAAATATATTAAGCTTACTTATATCTGA

Function

GO: NA

KEGG:

id description
K04359 PDGFA; platelet-derived growth factor subunit A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209511 lncRNA downstream 69462 13254473 ~ 13254773 (-) True G154601
TU209510 lncRNA downstream 71029 13252924 ~ 13253206 (-) True G154600
TU209357 lncRNA downstream 370847 12871558 ~ 12953388 (-) False G154515
TU209356 lncRNA downstream 370847 12947199 ~ 12953388 (-) True G154515
XR_005641887.1 lncRNA downstream 385571 12931733 ~ 12938664 (-) True LOC120574707
TU209628 lncRNA upstream 245909 13589524 ~ 13631836 (-) False tfap4
TU209669 lncRNA upstream 312403 13656018 ~ 13692471 (-) True G154713
TU209678 lncRNA upstream 412049 13755664 ~ 13827791 (-) False G154717
TU209680 lncRNA upstream 412049 13755664 ~ 13827791 (-) False G154717
TU209682 lncRNA upstream 412049 13755664 ~ 13827791 (-) False G154717
XM_039824680.1 mRNA downstream 61591 13226467 ~ 13262644 (-) True LOC120574422
XM_039825515.1 mRNA downstream 110515 13194950 ~ 13213720 (-) True LOC120574974
XM_039825517.1 mRNA downstream 114417 13194950 ~ 13209818 (-) False LOC120574974
XM_039825516.1 mRNA downstream 117739 13194950 ~ 13206496 (-) False LOC120574974
XM_039825513.1 mRNA downstream 138347 13160825 ~ 13185888 (-) False LOC120574973
XM_039824082.1 mRNA upstream 12611 13356226 ~ 13421951 (-) True prkar1b
XM_039824084.1 mRNA upstream 12611 13356226 ~ 13412053 (-) False prkar1b
XM_039824083.1 mRNA upstream 12611 13356226 ~ 13410144 (-) False prkar1b
XM_039824661.1 mRNA upstream 117288 13460903 ~ 13470236 (-) True trap1
XM_039824681.1 mRNA upstream 127083 13470698 ~ 13531719 (-) True crebbpb
TU209391 other downstream 344550 12973332 ~ 12979685 (-) False sun1
XR_005641885.1 other downstream 351425 12956522 ~ 12972810 (-) False iqck
unassigned_transcript_848 other downstream 481261 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641884.1 other downstream 758764 12427504 ~ 12565471 (-) False cep112
unassigned_transcript_847 other downstream 1837310 11486854 ~ 11486925 (-) True trnaq-cug_14
TU209766 other upstream 707123 14050738 ~ 14057312 (-) False med9
XR_005641939.1 other upstream 1191356 14534971 ~ 14543992 (-) False LOC120574989
TU210021 other upstream 1446441 14790056 ~ 14790778 (-) False LOC120574213
TU210042 other upstream 1452411 14796026 ~ 14828220 (-) False LOC120574214
TU210040 other upstream 1508324 14851939 ~ 14857557 (-) False LOC120575102

Expression Profile