RNA id: XM_039824127.1


Basic Information

Item Value
RNA id XM_039824127.1
length 8867
RNA type mRNA
GC content 0.54
exon number 50
gene id cacna1aa
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10061286 ~ 10149482 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctccccttgggGCCGCTGGACGAAGAGAGAGGAGGCCGTGAGGAACGCTCTACCCTACtccaatcagagagagagaaaggacgCTCTGCCAGGACATTTGGGCTTATCAGTGCGGACGAAGGTAGACTTTTCGGGGCGGGGATGGTGAGGGACTTTTTCGACACTGCTGCACCTCGAACATCCAAACCAAGATCATGAGAGGGTGTAAGACGGCGGAGAAGCGGCCGTCATACCCTTGTTTTTGACGACGCCGTCCGTGTGTCCCTTTCTCAGCTTCTGGATGGCCGCGCAGGTGACGGAGAGGAGATGATGGTTGCAACGAGGGAGGATATTATTGAATTCGTTTGAGACAATTATTTCATCTTCAGCGCTTGACAACAATGACACCGACATTTCAAAGGAAAACGgtatttttctttctcctttctaCTCGAGATTGTGCACTCTGAAATAAGACGCATTAATAACAAATGTCAGAATTGTCCTGGTCTCCAGGCTTATTAGGTCGCACTGGTAAAACAACTGTAAGGTGGCGGGAGCCCCATTATTCCCACACACTATGCCAAACATTGCGGATGTTtcgaaattaaataaataatagtaGCTTTTTCCCTTGTCAATGCCTTTTAAGTCTTCGGAACCGCGACCGTTTCCAAAATGAACGTCACTGACGGCCATAGCTACGGGCTGTTAACCATTTTCCCAGATTTATTTTCGACAATCTGATTTATTGAGGCCTGTGTGATTTAGAGTCGTTTAGATTGTCATTACATGCTGTCATGAGAGTAAAGAAATAAATCGTCCACAAAGGTGCAGGAGGCTGTGGTGCGCTCTGATGCAGGCATGAACCATGGAGAACATGAAACATTCATGTTAACTCGCTACATTCTCCCCATGATTTCATGTTGGGGGCGAAACCTGCTTCATACGGACATAAGAACCGACTAAGACTGAGACACCCCACAGCACTACCCTACAGTGCAACCAGTCAGCCAACCGACCACACATTTAATTTCCTCACACCCACAATTGGCCGTTGGCAGAGACGCAGAAGGAGACAGCAGCCTACATGGGCGTCCTCGTCTGCTAAAACCAGCATAGAACCGCTCGCCGGGTGCAGGTGTTCAGCGTAAGCTTACAAGACAACCCGTTGTGCATATGAGACGTTCTGATCCAGATGGGATGTAATGTTGTGTGGCTACACAGCTGAGCATTGGTCTTCTTCTCCGCTGCTTCGTGAAGATTGGCTTTCGGTGGTCAGAGAATGGCGCGGTTCGGAGATGAGGTACAGTCCAGGTATGGCGGAGGGCCCGGCAGTGGGGGCCCGGGCGGCCGCGGTGGTAGCAGGCAAGGAGGACCCCACGGACACGTTCACGGCCACGGGCATGGCCACGGGCATGGCCACGGTCCACCCGGAGGGCCCGGGACCCAGAGAATGTACAAGCAGTCTATGGCGCAGAGAGCCCGGACTATGGCCCTCTATAACCCCATTCCCGTGCGCCAGAACTGTTTCACTGTCAACCGCTCGCTGTTCATTTTCAGTGAGGATAACTTCGTCAGAAAATACGCCAAAAAGATCACCGAATGGCCTCCATTTGAGTGGATGATTCTAGCCACCATCATTGCCAACTGCATCGTCTTGGCTCTGGAACAACATTTGCCTGATGGGGACAAGACGCCACTCTCTGAGCGCCTGgATGATACAGAGCCGTACTTCATAGGGATCTTCTGTTTTGAGTCTGGAATAAAGATCCTGGCACTTGGGTTCGCCTTCCACAAAAACTCCTACCTGAGGAATGGATGGAACGTCATGGACTTTGTGGTGGTCCTCACAGGGATCCTGTCCACTGTGGGTTCAGATTTCGACCTGCGGACCCTCAGGGCTGTGCGAGTATTAAGACCCCTCAAACTGGTGTCCGGTATTCCTAGCTTACAGGTGGTGCTCAAATCCATCATGAAGGCCATGATTCCTCTGCTGCAAATTGGCCTGCTTCTTTTCTTTGCCATCCTCATGTTCGCCATCATCGGCCTGGAGTTCTACATGGGCAAATTCCACACAACCTGCTTTGACAATCACACAGGTGAGATCCGAGAAGAGTTTCCATGTGGGACAGAGCCTCCGTCACGGCTGTGTCCAGAGGGCACCATGTGTAGACAGTACTGGCTGGGACCAAACTATGGCATCACCCAGTTTGACAACATCCTGTTTGCTATCCTCACCGTCTTCCAGTGTATCACCATGGAGGGCTGGACTGACCTGCTCTACTATagCAACGATGCCTCAGGGAGTGCATGGAACTGGATGTACTTCATCCCCCTCATCATCATCGGCTCCTTCTTCATGCTCAACCTGGTGCTGGGTGTGTTGTCAGGggAGTTTgccaaagagagagagcgtgtgGAGAACAGGAGTGAGTTCATGAAGCTCCGAAGACAGCAGCAGATTGAAAGGGAACTCAACGGTTATCTGGAGTGGATCTGCAAAGCTGAAGAGGTCATCTTGGCGGATGATGACAATGAAAATGATTATGATGGCTCCCGCAGAAGAGCCACAAAAAACCATAAGAGCAAAGCTGAGCTGCTAAAcccagaggaaggggacggtgATTTGGCAGTAGGGTCACCGTTTGCCCGTGCCAGCTTGAAGAGCTCAAAGCTCGAAGGATCAGATTTCAAGCGGCGGGAGCGACGGCTACGCTTCCTTATCCGACACGTTGTTAAGTCCCAGGCCTTCTACTGGACCGTACTGTGTTTGGTGGGCCTTAACACTATGTGTGTGGCTGTAGTGCACTatgaccagccagacccactGTCGGATTTTCTATATTTTGCTGAATTAATCTTCCTGGGGATATTCTTGACGGAGATGTGTGTGAAGATGTATGGCCTGGGCAAGCAGGCCTACCTCAACTCCTCCTTCAACTGCTTCGACTGCATTGTGATATGTGGTAGTATATTTGAAGTGCTGTGGTCCATCATCCAGCCGGGCACGTCGTTTGGCATCAGTGTGCTACGAGCTCTCAGGTTATTGAGGATTTTCAAAGTCACCAAGTACTGGGCATCTTTGCGTAACCTAGTCGTCTCTCTGCTCAACTCCATGAAGTCCATCATCAGCTTGCTCTTCCTGCTTTTCCTCTTCATAGTAGTCTTTGCTCTGCTGGGCATGCAGCTCTTCGGAGGACAgtttaattttgaaaatggcaCTCCTCCGACCAACTTCGATACCTTCCCCGCAGCAATAATGACAGTGTTCCAGATCCTGACCGGTGAGGACTGGAACATGGTGATGTACGATGGCATCAAGTCTCAGGGCGGAGTCAACAAGGGCATGGCCTTCTCTGTCTTCTTCATCGTGCTCACACTTTTTGGCAACTACACTCTGCTGAATGTGTTCTTGGCTATCGCTGTGGACAATTTAGCCAACGCACAGGAACTGACCAAGGATGaacaagaggaagaggaggctgccaGTCAGAAGATTGCCCTGCAGAAAGCCAAGGAGGTGGCTGAAGTCAGCCCACTGTCTGCCGCTAACCTCTCCATTGCAGCCAACAAAGTACACAGTGAGTGTCACAACGCTACCGACCCCTTTCTGGactgTAAGGAGCAgcagaagaacaacaacaagGGGATCAACAAGTCAGTGTGGGAGCAACGTACCAAGGAGCTAAGGAGGCAGACTCTGGTGTCCAGCCGCGAGGCCCTCTATAACGAGCTGGACCCTGACGAACGCTGGAAGGCAAGGACAGGGAGGGAGGAGCAAAACAATGTGAACTTCTCACGTCACATCCGTCCGGATATGAAGACCCACCTGGATCGACCGTTGGTGGTCGACCCCCACGAGAACCgcaacaacaacaccaacaaGACCACTGCAAACAGTTCAGCAGACCTCTGCTTCAGCCAGCACCATCCTGCTGATGAGCTCCACAGACAAACACGCCTCCACGAACACGGTGGCCAAGTAGGTGGGGGTGGCGGAGGCGGCTCAGGTCCAGTCAGGGCTCCCTTGGAGAGGGGTGAGTCCACAGAGAGCAGGCGGAGTCGTAAAAGCGAGCACCACCACCCCAGCTCTCATGTCCGATTGGATGCTACAGTGATTCCTGGGCCAGGCTCGGAGGAGAGGCCTTCCAGGCGCCACCATCACACCCGGAGTGGCAGTCGAGGGGGAGGGCAGTCAGAACACAGGAAGCCCAGGTCACATCGAAAAAGTGCCGAAGATGGCGAGGATGGCGGGGGAGGAGCTGGAAAAACAGGGAGACATAAGAACAAAGGGGTTGACAGAGGTggtggagaaggaggagagcaGGAGGGAGCTGGGGATGGCAGTGAGAGGAGGCCAAGAAGGAATCGCCATGGCAACCAAACGGACGGCGAGGGGAAGAGGATGTGCCAGCACAGAAGGAAGGATTGCAGTGTCCCTAACCTCTCTACTACACGGCCCATTCAAAAGAGCCTCTCCAGGCAGGACAGCCAGTACAGTGAGGATATGGACAACCTCATGAATACCAAACTGGTCTCTGGCTCTACCCCAACCAGCGAGGTTCACCCTAATCCAGTTGCCAACCACACTGTGGCCCCTGGCTTTGGATCTGCCCTCCATCTTGCCAACAGTGGCACTCATGGGAGTTTAGTCACGTTAGATAGCTATGGGAGCATCGCCCATCACCGTACCAACAGTGTCATTAGGCTGCCCCACCCTGACTACACAGCTGTAGACATGCCAATTTTTCCATCCACCAATGCCATACTGCAGGTCAATAAAAATGCCAACACAGAGCCTCTGCCAGCGAAGGAGGATAaggacgatgatgatgatgagaagaGAAGGGAAGGAGGACCCAGGCCCATGCCTCCCTACAGCTCCATGTTTATCCTGTCCACCACCAACCCGTTTCGGCGGGCGTGTCACTACATCTGCACCCTGAGTTATTTTGAGATGACTATCCTGCTGGTCATTGCCATGAGCAGTATTGCCCTGGCTGCTGAAGACCCTGTCTGGCCCGAATCCCCTCGCAACAATGTCCTACGCTATTTCGACTATGTCTTCACAGGAGTATTCACATTTGAGATGCTGATAAAGATGGTGGATCTGGGCCTGGTCTTGCACCAGGGCTCTTATTTCCGGGACTTGTGGAACATCCTTGACTTTATAGTGGTTAGTGGTGCTCTGGTGGCCTTCGCCTTCACcagcggcggcggGGGGAGCAGTAAAGGAAAAGACATCAGCACTATCAAGTCTCTTAGGGTGCTGAGAGTGTTACGACCTCTGAAGACTATTAAACGTCTTCCCAAACTCAAGGCTGTGTTTGACTGTGTGGTGAACTCTCTGAAGAATGTGCTCAACATCCTGATTGTCTACTTACTCTTCATGTTCATCTTTGCTGTGGTGGCTGTGCAGCTCTTCAAGGGACGCTTCTTTTACTGCACTGATGAATCCAAAGAGTTTGAGCGCGACTGCAGGGGCGAATATCTGGTGTATGAACGTGATAACGAAGTGAAGGCGCAGAAGCGGGAGTGGAAGAAGTACGATTTCCACTACGACAACGTGGCTTGGGCCCTACTCACCCTCTTCACTGTGTCTACCGGAGAGGGGTGGCCGCAGGTGCTGAAGCATTCAGTGGATGCGACTTATGAGAACCAGGGCCCGAGCCCGGGGTACCGGATGGAAATGTCCATCTTTTACGTGGTGTACTTCGTGGTCTTCCCCTTCTTCTTCGTCAACATCTTCGTGgctctcatcatcatcaccttCCAAGAGCAAGGAGACAAGATGATGGAGGACTATAGTTTAGAAAAGAACGAGAGAGCCTGTATAGACTTTGCCATCAACGCCAGACCTCTGACACGCCACATGCCTAAGAACAAGCTGAGCTTTCAATACCGAATGTGGGAGTTTGTGGTGTCGCCGCCATTTGAGTATACTATCATGGCAATGATCGCGCTCAACACAATCGTACTGATGATGAAGtATGACGGAGCTTCTGAAACCTATGAAGCTGTGTTAGTCAACCTGAACATAGTGTTTACCTCCCTCTTCTCCATGGAGTGTGTACTCAAGATCATCGCCTTTGGAGTACTgAATTATTTCAAAGATGCCTGGAATATTTTTGACTGTGTGACAGTTCTGGGCAGCATTACTGACATCCTGGTTACAGAGCTTGGGATGAATAATTTCATCAACCTAAGTTTCCTGAGGCTGTTCAGGGCAGCTCGTCTCATCAAGCTGCTGAGGCAGGGAGAAACCATCCGCATCTTGCTCTGGACCTTCGTTCAGTCCTTCAAGGCACTGCCTTATGTCTGCCTTCTTATTGCCATGCTGTTCTTCATTTACGCCATCATTGGGATGCAGCTGTTTGGGAATATCGCTAttgaagaagaaggagagagcGCCATCAACCAGCACAACAACTTCAGGACCTTCGTACAGGCTCTCATGCTGCTCTTcaggaGTGCAACGGGAGAGGCGTGGCACGAGATCATGCTGTCGTGTCTGGGGAGCAAGGAGTGTGACCCCCTGGCAGGGAATCCAGAACCAGAGTGTGGCAGCCAGTTTGCTTACCTGTACTTTGtctccttcatcttcttctgTTCATTCTTGaTGCTGAATCTGTTTGTAGCCGTCATCATGGACAACTTTGAGTACCTGACGAGAGATTCATCCATACTGGGACCTCACCACCTGGATGAGTATGTCAGGATATGGGCCGAGTATGATCCTGCTGCCTGCGGTCGCATTCATTATAAGGACATGTACAGTTTATTACGAGTTATCGACCCGCCTCTCGGCTTAGGCAAGAAATGCCCCCATAGGGTGGCCTGCAAGAGACTGCTCCGTATGGACCTGCCTGTGGCCGATGACAACACGGTCCACTTCAACTCCACTCTCATGGCCTTGATCCGCACAGCACTGGACATCAAGATCGCCAAGGGTACGGAAGGTGGTGTTGACAAGCACCAGATGGACGCAGAGCTGAGGAAAGAGATGATGGCAATCTGGCCCAACCTCTCCCAAAAGACTCTGGATTTGCTGGTTACGCCACACAAGTCAGCCACAGACCTGACAGTGGGAAAAATCTATGCTGCTATGATGATCATGGAGTACTACAGGCAGAGCAAGATCAAGCGCTCGCAGGCTCTTCGGGATGAGCAGAATCGAACGCCATTACTGTTTCAGCGCGTGGAGCCACCTTCCCCCACCCAGGATGGGGGTCCGGGACTTAACAACGCCCTCCCTCCACCTGAGACAACAGAGACTGTCAACGGCCTgCCGGTGGAGGGGGGGGTCCCGGAGAGCCATTCATGGGTGACGGCTCGTGCTCAGGAGATGTCCCAGAAAGTCGGCAGCTGGAGCCCTGAGGGACACCCTGAGGATGGCCTGGGAAGCATGACCAACTCTCAGAcggtagagatgagagagatggGGCAGGATGGTTACTCGGATACTGAGCATTTTCCGCCAATGGAAGGCCATGGCAGGGCCGCTTCCATGCCCCGCCTCCCAGGCGACAACCAAACCATCAGTGACAGCAGTCCAATGAAACGCTCGGCCTCGTCGCTGGGCCACAGCAGGTCTGGGCGGGGCCACAGAGACAAAGGAGGGGCAGACGACTACAACATGGAGTGTGTACCTGAAGAGGGGAGGACTTCCAGACATGGACACCGTCGAAAAGACCGGAGTCATCGGGCGTCTGAGAGGTCCCTCTGTCGCTACACGGAGGCTGACACAGGCCTGGGCACAGACCTGAGCACAACCACCCAGTCAGGGGACCTCACGGCCAAAGACAAGGATCGTGACAGAGATCGCGGCCGGTCCAAAGACCGTAagcaccaccaccatcatcaccaccaccatggCTCTGTGGACAAGGAGCGCTATGTAGCAGATCGAGGGGGCGAGTTCGGACACAGGCACTCCCGCGACAGAGAGCATGAccgggagagggagagggagagggaaaggGACCGACGCTGGTCACGATCGCCCAGCGAGGGCCGCGAGGGCCGCGAGGGCCGCGAGGGCCGCGAGTGCATGACGCACAGACAGGGCAGTAGTTCGGTCAGCGGAAGTCCCGTCCCCTCAACCTCGGGGACCAGTACGCCACGCCGAGGCCGTCGACAGTTGCCTCAGACCCCCGCAACCCCCCGGCCCCATGTTACCTACTCCCCTGTGGTCCGTAAGGCCATGCCCACACCACCTGGGGGCCCACAGGGCCGACCCCCAGCCCCTGCCCCCCGTCGCTTTTCTCCTGAGCCTCCCCAGGGCCAGGGCCCTCCCCCCGCTGGCCTCCCACTAGCCCACCATGGCACAACCCGCCAGGGTCATCATCCCCCTCCTCGCTGGGGAGActcaggtggaggaggtggctCCATGGAAGGGGATGGCTGCTTCTACAACCAGGACTACCAAGACTATGAGCCCCACCACGAACCACCTGCCTATGAGCAGAGCCCCATGCAGGGTAGCAGCCCCCACCCCCATGCCCTGACCAATCACCCATTGCCGCCTCCCCCACAGCCACAGCCACAGCCAcataacccccacccccctccccagcCACACCCTGTAAACAATCCCCACCCTCATCCACCGCCACACCCACAGCCCAGTCGCACCTCACCTAGGACTGCCGGCCATGCGCCCCCTCCGACCACCGCCCTGACTGGGCCTGTACAGGGCCAGATGCAGCCTGCTGCCCAGCGCCGCCTACCCAATGGCTACCGCTCTTCATCCCCTTCCACACATCTCCATGGACCCCAACATACTGGGCCCCACAAGGTCCCTCCTCCAGCCGGGCATCCTAGAGGTCCCCGCAAGGGCCTGCATGAACCCTACAGCAAGACGGAGGACGACGACTGGTGCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208150 lncRNA downstream 24527 10034440 ~ 10038785 (-) True G153631
TU208147 lncRNA downstream 35613 10025317 ~ 10027699 (-) True G153630
TU208146 lncRNA downstream 38185 10024923 ~ 10025127 (-) True G153629
TU208138 lncRNA downstream 38546 10020171 ~ 10024766 (-) False G153623
TU208192 lncRNA upstream 13964 10163444 ~ 10169439 (-) True G153663
TU208203 lncRNA upstream 137155 10286635 ~ 10294166 (-) True G153671
TU208277 lncRNA upstream 445263 10594743 ~ 10595007 (-) True G153734
TU208577 lncRNA upstream 755875 10905355 ~ 10907608 (-) True G153937
TU208598 lncRNA upstream 801091 10950571 ~ 10959521 (-) True G153950
XM_039825001.1 mRNA downstream 324007 9697643 ~ 9739305 (-) True LOC120574579
XM_039824655.1 mRNA downstream 656508 9391565 ~ 9406804 (-) True LOC120574368
XM_039824654.1 mRNA downstream 718140 9343701 ~ 9345172 (-) True LOC120574364
XM_039825003.1 mRNA downstream 1015189 9043413 ~ 9048123 (-) True cabp5b
XM_039825615.1 mRNA downstream 1026727 9020086 ~ 9036585 (-) True sez6l2
XM_039825976.1 mRNA upstream 17232 10166712 ~ 10176011 (-) False gtf2f1
XM_039825973.1 mRNA upstream 17232 10166712 ~ 10176011 (-) True gtf2f1
XM_039825975.1 mRNA upstream 17232 10166712 ~ 10175957 (-) False gtf2f1
XM_039825974.1 mRNA upstream 17232 10166712 ~ 10175863 (-) False gtf2f1
XM_039824227.1 mRNA upstream 202678 10352158 ~ 10390133 (-) True gtpbp1
unassigned_transcript_828 other downstream 240319 9822145 ~ 9822993 (-) True LOC120574648
TU207919 other downstream 324825 9737970 ~ 9738487 (-) False LOC120574579
unassigned_transcript_821 other downstream 326478 9735626 ~ 9736834 (-) True LOC120574583
unassigned_transcript_820 other downstream 330117 9732686 ~ 9733195 (-) True LOC120574609
unassigned_transcript_819 other downstream 332169 9730652 ~ 9731143 (-) False LOC120574633
TU208206 other upstream 211321 10360801 ~ 10390120 (-) False gtpbp1
TU208205 other upstream 211332 10360812 ~ 10390120 (-) False gtpbp1
TU208212 other upstream 211332 10360812 ~ 10390176 (-) False gtpbp1
TU208443 other upstream 634632 10784112 ~ 10791539 (-) True LOC120574455
XR_005642003.1 other upstream 818626 10968106 ~ 10968174 (-) True LOC120575512

Expression Profile