RNA id: XM_039824144.1


Basic Information

Item Value
RNA id XM_039824144.1
length 1454
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC120574080
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 2737935 ~ 2750253 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTACAGCCGACTAAACCTTCAGCGAATACAGAGCAAAATCTCTGTTTTTATAGACTTTTCCTGTCAGAAGAAGGGTAGCAAAAGAGGTAACACCCCCAAAATTGATTAAAACAGGGAggatattttgagatattcatttttaaataatgtttttttttattatcttgtaATTTCAATTAATTTGGGAGCATTCTTTTCTGCCCCTCCAATGCCTAAAGTCCCACAATCCTCAGCAGTgtttcaaaatcaaataaaatctCTTTGTGTCATGTCATCAGTTGATGggtgtgagaaagagaaaagaggacgTTGCCAGCAAACGAGGACACACAAGAAACACTCAACATTCAGCTGTGCAATACAGAGTCAGCGCTCAGTCTGCCATGCCGCGGTCGTTCCTCGTCAAGAGTAAAAGGACTCATGTACTTGGCTCATCTAAGGACTTCTATAGACGACATTCCCAGCCCCAAACAGACGCCCACCAGCCTGTGCAGCATGCGATGGGACAGGACAGGAGGTGTCCGGAAGATGTTGTGCAGCCTTTGTACCCCATGTTAGGGGTCAAAGAGCGTCTGGCTGAAGCCAGCTCACCGTGGGACGGGATGGCAGTCCAGTCTCACTCTGCCCCCACAAATGAGCTTTGGCCTTCAGCCCCTGTGGAGAACAGAGACGCTCCTCTGCCGTTCTCGCCTTGGACGGCGGACAAACACCCGGCatctgaaagagagagacacctGGAGCGACTGGTCTTCATGTTAGTCAACCACACATCGCACACTGACCTCAAATCCCCTGTCAGCGAGTGCCCGCTCTGTGAAAAGTCTCTTTCAGAAGTGTTACTATCAGGAGGTGGCCTGCAGGCTTATCTTCACAACACCCTCTCCGTCCCATTGACCAGATCCCCAACTGCCAGCGACATGCCGTTTGGCTTCAGGGCACTAAGCAGCTACGGTAGAGCTAAGGACCGTAGCTTTGGCTGCAAGGTGTGTGGAAAGGTGTTCAAGCGCTCGTCCACCCTGTCCACACACCTCCTCATCCACTCAGACACGCGGCCTTACCCCTGCCAGTACTGCGGGAAAAGGTTCCACCAGAAGTCAGACATGAAGAAACACACCTTCATACACACAGGGGAGAAACCACACGTGTGCAAGGTGTGCGGTAAAGGATTCAGCCAAAGCTCCAACCTCATCACCCACAGCCGAAAGCACAGCAGCTACCGGCCGTTCAGCTGCCCCCGCTGCAAGCACAGCTTCCAGCGCAGGGTTGACCTACAGCGCCACCAGCAGATGCAGTGCAGCTATGAAGACATGTACACTCAACAGTCCATGAAGCAATGAAGTGATGgcattttttgtaaataatgCTCAATCATTCATACTTGTAAAAGTCAGAAGAATATGCATATCATGACGTCTCTGCAACGTAAATATCAATAAAATTGTGTATGAATGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204861 lncRNA downstream 21715 2715669 ~ 2716220 (-) True G151203
TU204863 lncRNA downstream 21715 2715669 ~ 2716220 (-) False G151203
TU204854 lncRNA downstream 60866 2676597 ~ 2677069 (-) True G151200
TU204759 lncRNA downstream 94185 2399809 ~ 2643750 (-) False G151146
TU204757 lncRNA downstream 94185 2438667 ~ 2643750 (-) False G151146
TU204848 lncRNA upstream 126711 2876964 ~ 2929497 (-) True G151194
TU204847 lncRNA upstream 167458 2917711 ~ 2920158 (-) False G151194
TU204849 lncRNA upstream 192028 2942281 ~ 2944617 (-) True G151195
TU204964 lncRNA upstream 198832 2949085 ~ 2949619 (-) True G151261
TU204978 lncRNA upstream 219701 2969954 ~ 2970309 (-) True G151275
XM_039823842.1 mRNA downstream 287466 2438102 ~ 2450469 (-) True pglyrp6
XM_039825406.1 mRNA downstream 304715 2355442 ~ 2433220 (-) True si:ch211-194b1.1
XM_039823830.1 mRNA downstream 512967 2214594 ~ 2224968 (-) True LOC120573916
XM_039823890.1 mRNA downstream 528678 2164720 ~ 2209257 (-) False ilf3b
XM_039824003.1 mRNA upstream 51129 2801382 ~ 2820321 (-) True si:ch211-106h11.3
XM_039824004.1 mRNA upstream 90180 2840433 ~ 2842813 (-) True LOC120574018
XM_039824168.1 mRNA upstream 249397 2999650 ~ 3003392 (-) True trir
XM_039824169.1 mRNA upstream 249397 2999650 ~ 3003391 (-) False trir
XM_039824171.1 mRNA upstream 257836 3008089 ~ 3035012 (-) False hook2
TU204768 other downstream 138953 2542429 ~ 2598982 (-) False G151146
TU204751 other downstream 138953 2596802 ~ 2598982 (-) True G151146
TU204533 other downstream 576213 2155596 ~ 2161722 (-) False farsa
XR_005641788.1 other downstream 883834 1853642 ~ 1854101 (-) False LOC120573864
TU204241 other downstream 916089 1818724 ~ 1821846 (-) False LOC120573867
TU204905 other upstream 123665 2873918 ~ 2896343 (-) True G151216
TU204921 other upstream 161073 2911326 ~ 2915367 (-) True G151227
TU205089 other upstream 561474 3311727 ~ 3316915 (-) True G151344
unassigned_transcript_716 other upstream 1279926 4030179 ~ 4030260 (-) True trnas-aga_11
TU205621 other upstream 1611595 4361848 ~ 4367333 (-) False LOC120575464

Expression Profile