RNA id: XM_039824191.1


Basic Information

Item Value
RNA id XM_039824191.1
length 3627
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC120574105
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 16929075 ~ 16935610 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTGCAGCCTACCTAATAAGCTTTGTAAGATTTATCACAAAATCTAGAGTTAACAAGAGGTCTAtgttgtttaaacaacttttaatTAGCAGCATATCCCAAATTATTTGGcttgtggagagagagagagaaagagagagagagagagagagagagagagagagagagacaccacaACTACAATAATGGCGAACTATAATAATTAGGCTATAGAAATATGACTAATAGTAATTATAGCAGTGGGTATAATGGAATtacatgatgaacagtggcaattctACAGTAAAGATAATAAAACtatgactaataataatatCCAGACCAGGTGCCACCTCAATCCAAGCAAATCTGCGATTCAATATTCTCATAGGCTTCTCTCATAATTCATATGAGAAACACTTATTTGGCCTTTAATATCTATTGAGCCCCGTAGAACACAAAATAGAAGGTATTGGCTTGACACAATCAATTGTGTTTTTCTTACAAACTATTAGCAGCTCAACCATCTGTTACGTGTTCTCAGCAGTATCATTGTGATCCAtgaattgtttttttcagatttacTGCATCTGCACTTATAGTAGCTATTGTTCATATGCTTGATACTGTTTATGATGGCTCAACTTCCCTTGAAGAAAACCTTGGTTAGAGAAATCAAAGTACAGCATTGCACCATCACCATTCAACTCAACAGTGGAACCACAGTCCAGTCACTAGCTCCCTGGTGGTGTGCAATTAGGTCATAGGACGCACTTTCATCAGTTGCCTTTATTTCACCTTTTCAAACAAAGCCATGCGTATCAAACATCTCAATTCTCAACTGGCAACCTTTTTTTAAGAGCAGCAATCTGGACATTTGGGATTCAGTTGTAGTCCTTTGGAAAATGAATGACATAAAAGCTCCACATCCATGACTTAATGCATTGATTTACTTCCAACACCTCACCTACTGTGAAACAAAAGTCACTATTAAAGTGCTCTAAAATAGCTTTATAAGTATATTTGTAATCAGTGTAAATACCCTATAGAGAACCATTTGAGTATCATGGTTATATGACTGTCCGCAGTCTTTTGAAAACACTGCACAGTGAACACGTGGAATGGTATCTGaaaatacaatatacaaaataactaaaataatatgatttaTGTAATACGAAATATTTAAAACTGCTCTGGCTTCTCCACATACATCGACATACTGTAGAAGGGAAGAGTGGTGAATAAATACAGCATCAGCTGGCTTATGCTGCCCTCTATTGGATGAACATCAATGCAGGATAAATATGGAAAATGGTGCCGAAAACAACAAAGAATAACCTAGATATGAACTATACAAATACCGAATAGCCTATGTACAACACAAATTGATCATGTAGCCTAGCTAGCCCTCTCCTGTAAACACTATGGTTTGTCATTAAAcaacatattattatatatattacgtAACGTGTTACTTTTTATTGAATTTCTGCAGCACAATGGAGGGAAGGACCGGATGTGCCACAGGCAACTCAGTCCGTCTGTGGACCTCTTAACATGGTGCAAGACTCCACTCTACGTGGATTAATCACTCTGTGGATATAGGACCTCGGGAGGTCTCCAACCAGCAATTTAAGAATCactaaaaaatatattaaaatgtcaAAGCTGCAACTTATTTTACCGTTGTATATTGACGTTGTTATAACATATGCAAACTGTATTTTTAAGCAATTACTCAAAACTGAAGAGATATTTAAACTGCTTCAGGTGACTACCTTGCATGAATAGGCCTGCCTGCCActaagacaaacacacatcaaGATTTATTTTATCTCTAGCTGTTTGTTCAGCTCTTCAGtagtagcctagcctactgaCCTCAGCAGATCAAGGGTTCAGGACGCTCCCGAGTTTGCAGGCGATGGCAATTGTGATGCTGTCAGCCAACAGCTGCGGACAAGACAAAAGAATATGATTTAGCTTTAACGTATAAGTATAAGTAACATGTGTTTGCTTTGGATTCCAGTGCCTTTAAGCAACACCTTGCCATGGGCTTCAACTTTGGCTGTTATTCAAAACAGCGCAGTCACAGTGAAGATGTCCCCAAATGTACTGAAATACCGTCCATGGGTAGATGATCAAAACCATGTCAAGCAGAGCGATATAGTTATTTTGCATGCAGGGTTTTTGTATGGTGATACATAATTGTCAGACCATATAtggtaaatacaatacaatacacaataGACcataaaaattaaacaaaacagaTTTGCCAAACACAAACGATGAGATATCATTAGTTTTTAACAGTTGTGTTGCAAAAAAAGACAACCTGCCATAGAGATTAATTATAAAATAACTtcttaatttaaatgttaatatCATATAAATCCTGCATTTTATATTGCCAACCAGACTTTTAGATTAAAACAAGCCTCATCCTACATATCAGGCAATAAAAAGCACAGCCGGTTTGTAATTGGTCACTTTTTGCCTCCACACGTTTGCCTCCACTCATTAAACCGAGGATTCATCGGCTCTTCTGTTCAATGAATAAGCCAGCAGGGAGTCAGAGCTCATACAGAGAAAAAATATGTGTTATAAGGATTTGGTATAAAAAAAACGGTTGTAATTATTGGAGCTATAGTACtttattatactttttattagtctatatcctcgactgAAGCGCCCTGTGCTGGTGATTTGATATGAACTTGGGTTGAAGTTGAGAGCTCAAGTCGACGAATTGCAGTCATATTACTTGATTTTGGGGCACTACATTTGTGAACTGCTGATGTAAAACAAACCCTATAACATTTCCTATATGCATATCCCTACCCTATCCATTtccattgtctttttttcttttcatttcaaacTGCACCATTaagaacaaaaatatgaattgtATGTTGACAGTGGACAAAAATAGTTAATTGTTCTGAAACACCACCACTAAACCGTTTCCATTTCTGTCTAGAAAATTCTAGGCGGTGCATATAGGCTACCCTTATCATAGCTGCAAATCCATGACACAGTACCATGCAAGCCCACCGCCCATACAATCGCTTGCTTATGGGAGGGGAGAAGGGTTGCTTTAAAAGTAGCATCTGGTGCCGGGGATCTGCAGACCTGCACAGGAAAACCTAGAGCCAGCAAAATGGTTGAATGGACAGACTTCGAGCGCGCCACCATCGTGGACATCTTCTCCAAGATGCAGTATGAGGTCGTGGGCCCTGAAGCTCTTGCTAGGTGTCTGATCGTCTACCCCTGGACTCAGAGGTATTTCGGCAACTTTGGAAACCTCTACAACGCCGCTGCTATCTCTGGAAATCCGATGGTTGCAAAACACGGAACAACTATCCTCCACGGTCTGGACCGGGCTGTGAAGAACATGGACGACATCAAGTCAACCTATGCCGAGCTGAGCGTGTTGCACTCTGAGAAACTGCACGTGGACCCCGACAATTTCAAActccTGTCCGACTGCCTGACCATTGAGGTTGCAGCCCAGTTGGGTAATGATTTCACCGGTGAAGTCCAGGCAGCTTTCCAGAAGTTCCTGGCCGTGGTGGTGTCCTCCTTGGGAAGGCAGTACCACTAGAGAGCTGCAACAGAAGACCGGCACATGCTGA

Function

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K13825 HBE; hemoglobin subunit epsilon

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211077 lncRNA downstream 18024 16910274 ~ 16911079 (-) True G155722
TU211033 lncRNA downstream 88816 16839035 ~ 16840287 (-) True G155697
TU211032 lncRNA downstream 90386 16836993 ~ 16838717 (-) True G155696
TU211027 lncRNA downstream 92714 16834366 ~ 16836389 (-) True G155693
TU210976 lncRNA downstream 159165 16767433 ~ 16769938 (-) True G155659
TU211120 lncRNA upstream 32183 16967793 ~ 16968083 (-) True G155759
TU211137 lncRNA upstream 78094 17013704 ~ 17017779 (-) False mgrn1b
TU211140 lncRNA upstream 101568 17037178 ~ 17037710 (-) True G155775
TU211184 lncRNA upstream 181662 17117272 ~ 17117596 (-) True G155796
TU211187 lncRNA upstream 188580 17124190 ~ 17124481 (-) True G155799
XM_039825561.1 mRNA downstream 3126 16925152 ~ 16925977 (-) True LOC120575001
XM_039825560.1 mRNA downstream 7085 16921146 ~ 16922018 (-) True LOC120575000
XM_039826147.1 mRNA downstream 52162 16875084 ~ 16876941 (-) True angptl8
XM_039826145.1 mRNA downstream 72264 16840432 ~ 16856839 (-) False elavl3
XM_039824188.1 mRNA upstream 3710 16939320 ~ 16940190 (-) True LOC120574104
XM_039823705.1 mRNA upstream 25830 16961440 ~ 16963966 (-) True mpg
XM_039823848.1 mRNA upstream 68537 17004147 ~ 17005544 (-) True aanat2
XM_039825356.1 mRNA upstream 76801 17012411 ~ 17023208 (-) False mgrn1b
XM_039825357.1 mRNA upstream 76801 17012411 ~ 17023208 (-) True mgrn1b
TU210878 other downstream 286972 16569446 ~ 16642131 (-) True G155583
TU210768 other downstream 670078 16230784 ~ 16259025 (-) False LOC120574432
TU210769 other downstream 683772 16230784 ~ 16245331 (-) False LOC120574432
TU210689 other downstream 773076 16153851 ~ 16156027 (-) False LOC120574545
TU211128 other upstream 97439 17033049 ~ 17035018 (-) False polr3k
TU211291 other upstream 479915 17415525 ~ 17415841 (-) True G155888
unassigned_transcript_855 other upstream 810976 17746586 ~ 17746657 (-) True trnat-cgu
TU211468 other upstream 1084401 18020011 ~ 18022964 (-) False psmg3
XR_005642010.1 other upstream 1417151 18352761 ~ 18352844 (-) True LOC120575519

Expression Profile