RNA id: XM_039824311.1


Basic Information

Item Value
RNA id XM_039824311.1
length 4297
RNA type mRNA
GC content 0.52
exon number 31
gene id usp7
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6861045 ~ 6891170 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAGAAGAGCGCGACCGCCATTTTGAGATTTACCTCAGACTCAACACATCACAAACCACGGGAGAAGCGGGTTGAGAGCTATGGTTGAAATCCACACAGCTCAGGCTAACGTTGTATGACCGGGCACATTCCTCACAAGAAACAAGAGGTTAGCTAGAAATGCAACGAAGTGCCGCGTTTTGTTGTATATCGTGTTAGGGGTGGTTTGGGGAATTGGTTTATGTCGGGCCGTGGCAACTCTCGTCTCCGCGAACTTCCAAATCAACATTAGTGCTATTTCGTATTGGAAACGGGTTTGAATGGATAGCTTTTTCCTCCGCTCTTCCCCAGACGAGGGACAATCGGAGGAACACACGGACTGGGGATATTGCAGACAAAGttgttgaatgtgtgtgtatagcaaatgaaccttttttttcattgttgttgTACCTATATCACCAGTTGGCTGCCTAGTGTCGGGTAGCTTAACGCTAGCTATAAACAGGGTATTTGTTCCTCAAGGTGCAGGTCGTTCTGTGCGTTGTCTTATTGCCTCACATTTCCCGGGGTAAAGCCGGATTGATTTAGCTAATTTCAGCGGGCCTCCCTCCTCGGAGCCCCGGTCCATCCATCCCACTCCCCACCGTCAACCAGCGACTCGCACCCACTAAAGGCGCCGAGATTGGGCGAATAGCGAGCAAATACGTCCGCGTTTCTTTACCCGCTCCCCCGCCGACCTCCCCTCCTCACTCCCCGGCGCTGACAGCAGACAAGGCCGAGGTCGCGACAGAGCAGGCCCGGCCGCTGAGGCTCGACCTGTCCACCCCACCTTCGCATCCTACCACACCTCACCAGCAGTCCAGAACCCGGTTCCCCGCAGAGCCTACCCTGGACAAGGTCGAGGGTAACAGAGATAGCAGGGAGCACCgcatcacaacaacaacaacagctgccaaCATgaaccaccaccatcaccacacgcagcagcaacagaaagcCGGCGAGCAGCAGCTCAGCGAACCAGAGGACATGGAAATGGAAGCTGGGGACACAGATGACCCGCCAAGAATCCCGGCAAACCCAGTGATCAATGGTAACGTGGCCATGGCAGATGgacacaacaacacagaggaggacatggaggacgACACCAGTTGGCGGTCAGAAGCGACTTTCCGCTTTGTGGTAGAGCGCTTCAGCCGCCTGAGTGAGTCTGTGCTCAGCCCGTCCTGCTTTGTTCGGAACCTTCCGTGGAAGATAATGGTGATGCCGCGCTTCTATCCCGACCGGCCACACCAGAAGAGCGTGGGCTTCTTCCTGCAGTGTAATGCAGAATCAGATTCCACGTCATGGTCGTGCCACGCACAGGCCATGCTGAAGATCATCAACTACAAAGACGACGAGAAGTCTTTTAGCCGCAGGATCAGTCATCTGTTCTTCCACAAGGAGAATGATTGGGGCTTCTCCAACTTCATGTCCTGGAGTGATGTGACTGATCCAGAGAGGGGCTTTATTGATGATGACAAAGTCACATTTGAAGTCTATGTCCAGGCAGATGCCCCGCATGGAGTGGCATGGGACTCTAAGAAACACACAGGCTATGTAGGACTAAAGAACCAGGGAGCTACCTGCTATATGAACAGCCTGCTACAGACACTCTTCTTCACCAACCAGCTACGACGGGCGGTGTACATGATGCCCACAGAGGGAGACGACTCGTCCAAGAGCGTTCCGCTAGCACTGCAGAGGGTTTTCTACGAGCTGCAACACAGCGACAAGCCCGTCGGCACCAAGAAACTCACCAAGTCCTTTGGATGGGAAACACTAGATAGCTTCATGCAACACGATGTACAGGAGCTGTGTAGAGTGCTCCTGGACAATGTGGAGAACAAAATGAAAGGCACTTGTGTTGAGGGAACCATCCCTAAGCTCTTCAGAGGAAAGATGGTGTCATATATCCAGTGTAAGCATGTGGACTACCGGTCAGAGCGGATAGAGGACTACTATGACATCCAACTTAGcataaaaggaaagaagaacATCTTCGAGTCATTCAAAGATTACGTTGCAACCGAACAGTTAGATGGAGACAACAAATACGACGCAGGAGAGCATGGCCTGCAGGAAGCAGAGAAGGGAGTGAAGTTCCTTACTTTCCCTCCAATCCTCCACCTGCAGCTGATGAGGTTCATGTATGACCCTCAGACCGACCAAAACATCAAGATTAATGAcagGTTTGAGTTTCCGGATCAGTTACCCCTGGATGAGTTCCTTCAGAAGCAAGACTCCAAGGACCCAGCCAACTACATCCTGCATGCCGTGCTTGTGCACAGCGGGGACAACCACGGCGGGCACTATGTCGTCTATCTCAACCCAAAGGGAGACGGCAAAGTCAGTGTCAAGGAACCAATATGGTGTAAGTTTGATGATGACGTAGTGTCGCGGTGCACCAAGGAGGAGGCCATAGAGCACAACTATGGTGGACATGATGATGACCTCTCAGTGCGCCACTGCACCAACGCATACATGTTGGTCTACATCCGCGAGTCCAAGCTCAGCGAGGTGCTCCAGCCAATGACTGACGTGGACATCCCCCAGCAGCTGGTGGAGCGTCTGCAGGAGGAGAAAAGGGTGGAGGCACAGAAGAGGAAGGAGCGCCAAGAGGCTCACCTCTACATGCAGGTCCAGATTGTAACCGAGGACCAGTTCTGTGGTCATCAGGGCAATGACATGTATGATGAGGAGAAGGTGAAGTACACAGTCTTCAAGGTCCTGAAGAGCTCTACGCTGCAAGAGTTTGTCCAGACCCTCTCCCAGACCATGGGTTTCCCACAGGACCAGATGAGGCTGTGGCCCATGCAGGCCCGGAGCAATGGAACGAAGCGACCCGCCATGCTCGACTACGAGGCTGACTGCAACAAGTCGATGATCGACTTGAGCGACAATGAGAACCCCTGGACAATATTTTTGGAGACAGTGGATCCAGAGATGGCGGCCAGTGGGGCCACATTACCCAAGTTCGACAAAGACCatgatgtcatgttgttCTTGAAGATGTATGACCCCAAAACCAGAAGCTTAAATTATTGTGGACATATCTACACAcctatatcctgcaaaataaGAGACCTTCTACCAGTCATGTGTGAGAGAGCAGGGTTTCAGCAGGAAACTAGCCTTATCCTCTATGAGGAAGTAAAACCCAATCTAACGGAGCGGATACAGGACTATGATGTCTCTCTGGACAAGGCCCTGGATGAGCTCATGGACGGGGACATCATTGTCTTCCAGAAAGACGATCCAGAGAACGACAGCAGCGAGCTGCCTACTGCAAAGGACTATTTCCGAGATCTCTACCACCGAGTGGACGTCATTTTCTGTGACAAGACCATCCACAACGACCCCGGCTTCGTCGTCACACTCTCTAACCGCATGAACTATTTTCAGgTGGCCAAGACAGTAGCGCAGAGGTTGAACACAGATCCCATGCTGCTGCAGTTCTTCAAGTCACAGGGGGACGGTCCAGGGAATCCTCTCAGACACAACTATGAGGGAACGCTGCGGGACCTGCTGCAATTCTTCAAGCCTCGGCAGCCCAAGAAGCTCTACTATCAGCAGTTAAAGATGAAGATAACAGACTTTGAGAACAGGAGGAGTTTTAAATCCATATGGCTCAACAGCCAGTTCAGAGaggaggAGATCACCCTCTACCCTGACAAGCATGGCTGTGTGCGGGACCTTTTGGAAGAATGTAAAAAGGCAGTGGAGCTCTCTGAAAAAGGCTCTGAGAAGCTCAGGCTGTTAGAGATAGTAAGCTATAAAATCATCGGGGTTCACCAGGAGGACGAGCTGCTAGAATGTTTATCTCCGGCTGCCAGCCGCACCTTCAGAATAGAGGAGATTCCATTGGATCAGGTGGACTTGGACAAGGACAGTGAAATGCTCATCCCTGTCGCTCACTTCCACAAGGAGGTCTTCGGCACCTTCGGGATCCCCTTCTTGCTCAAGATCAGACagGGCGAGTCATTTCGGGAGGTGATGAGGAGGATCCAGACCATGCTGGACATTCAGGAGAAAGAATTTGAGAAGTTCAAGTTTGCGATTGTGATGATGGGGCGGCATCAGTACATCACTGAAGACGAGTATGAGGTCAACCTGAAGGACTTTGAACCACAGCCAGGTAACATGTCCCACCCGCGCCCCTGGCTAGGGTTGGATCATTTCAACAAAGCTCCAAAGAGAGGTCGCTACACCTACCTGGAGAAAGCAATCAAGATCCACAACTAAAAGCAGCCCGCCCTTCCCTTTtgtcctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206823 lncRNA downstream 89249 6772880 ~ 6773713 (-) False arhgdig
TU206694 lncRNA downstream 105877 6756791 ~ 6757085 (-) True G152577
XR_005641813.1 lncRNA downstream 151763 6709402 ~ 6711199 (-) True LOC120574035
TU206674 lncRNA downstream 264086 6597999 ~ 6598876 (-) True G152560
TU206672 lncRNA downstream 265119 6597354 ~ 6597843 (-) True G152559
TU206870 lncRNA upstream 122077 7013247 ~ 7013685 (-) True G152720
TU206859 lncRNA upstream 130299 7021469 ~ 7038559 (-) True G152712
TU206881 lncRNA upstream 309517 7200687 ~ 7200912 (-) True G152730
TU206880 lncRNA upstream 313144 7204314 ~ 7206094 (-) True G152729
TU206894 lncRNA upstream 439640 7330810 ~ 7356838 (-) True G152738
XM_039823947.1 mRNA downstream 26139 6833361 ~ 6836823 (-) True LOC120573992
XM_039823948.1 mRNA downstream 26139 6833487 ~ 6836823 (-) False LOC120573992
XM_039825497.1 mRNA downstream 31289 6814676 ~ 6831673 (-) False clcn7
XM_039825496.1 mRNA downstream 31289 6814676 ~ 6831673 (-) True clcn7
XM_039823650.1 mRNA downstream 61426 6772880 ~ 6801536 (-) True arhgdig
XM_039826083.1 mRNA upstream 13849 6905019 ~ 6909430 (-) True dctn5
XM_039826087.1 mRNA upstream 28771 6919941 ~ 6957625 (-) False LOC120575358
XM_039826089.1 mRNA upstream 28771 6919941 ~ 6957599 (-) False LOC120575358
XM_039826085.1 mRNA upstream 28771 6919941 ~ 6957599 (-) False LOC120575358
XM_039826086.1 mRNA upstream 28771 6919941 ~ 6956218 (-) True LOC120575358
TU206683 other downstream 142319 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 634848 6182408 ~ 6228114 (-) True G152441
TU206279 other downstream 1249294 5574680 ~ 5613668 (-) False atp5mf
XR_005641918.1 other upstream 1190968 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 1550009 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 1840227 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 1921172 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 1962590 8853760 ~ 8856957 (-) True tufm

Expression Profile