RNA id: XM_039824322.1


Basic Information

Item Value
RNA id XM_039824322.1
length 5687
RNA type mRNA
GC content 0.49
exon number 10
gene id epn2
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 7933459 ~ 7964396 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTCCCCCTCCCGCTCTGCCCGCCATGTTCTGGAGGAGGAGATACGTGTAGCCTGGCTTTAGCTGGTTTAGCATTAGCAACACATAGCTAGGCGGAGGCGCAACAAGCTCCCTGAACGCCAAAATAagtactctttttttattttaccctgGAATTGGCAAAACTCGTTTATGGGGTTATATCCGTGGAGTATCAGTTATATCTGACGTAACCCAAACGACATGGTGATGGCGTGGTCATGTTTGCAgccagcactgtgtgtgtggtgatggtTTTAACAGACGCTGTTCTGGAGGACTCAGGAACACTGCACTGGCCTGGAGAAGCctcataaacaaacacacacatacacaacagacacacacacacacacacacgcacgcacctgTACACAAGattgacacatacacacgccACCGCCGTGCCTTGAGAAAGGACACAGGCGCACGGACACGTAACACAAGCCTGttgcacgcgcgcacacatttacaccttctgtgtgtgtgtgtccgtccgtcTCTACTCAAACATTATTGGTGCCCTAGCTCCTCTCCTGTGTGAGAGCGTGCGTTTTATTTCTCCCCGTCTGTCCCATCGCCGCCGCCACCATGCCGAGCTCCACCATCCGCCGGCAGATGAAGAACATGGTGAACAACTACTCTGACGCCGAGAAGAAGGTCAGAGAGGCCACTTCCAACGACCCCTGGGGCCCGTCGTCTTCGCTCATGTCCGAGATCGCCGACCTCACCTACAACGTGGTCGCCTTCAGCGAGATCATGAGCATGATCTGGAAGCGGCTCAACGACCACGGCAAGAACTGGCGCCACGTCTACAAGGCCCTCACCCTCCTCGACTACCTGATAAAGACAGGCTCAGAGCGAGTGGCGCTGCAGTGCAAAGAGAACATCTTTGCCATCCAGACTCTGAAGGACTTCCAGTACATTGACCGAGACGGCAAAGACCAGGGCATCAACGTCCGGGAGAAGAGCAAGCAGCTAGTGGTCCTACTCAAAGACGAGGACCGTCTCAAAGGAGAGCGGTCTCAGGCTTTGAAGACCAAAGAGCGTATGGCCCAGGTGTCCACAGGGAGCACTCAGATGGGTTTTGGCCGAGGCTCGTCTCAGCCCAACCTCTCCACTTCCTACAGCGAAGAGTACGGCCGGTCAGAGGGCTCACCTGCGTCCTATCATGGCTCCACGTCTCCCAACGCGGGTTCAGAACTGGAGCAGGCCAGACCTCAGACCAGCGGAGAGGAGGAGCTACAGCTGCAACTGGCTCTGGCCATGAGCAGAGAGGCTGCGGAGCAGGAGGAGCGCTTGCGCAGAGGGGACGACCTGAGACTACAGATGGCCTTGGAGGAGAGTAAGAAAGGAGGTCCAGAATCGGCAAAACTGCccaagaagaagagagagcCACAATCATCTTTAATGGATCTGATGGATGTCCCTGAGCCTGGTGCCCGTGCTGACCCCTGGGGGGCCGGAGTTGGAGCCGGGGTTGCGGCAGCCTCTGCTTTAGAAGACCCCTGGCACTCTTAtgGGTCTGCACCTAAGCCAGCAGCCCCAGTGGACCCATGGGGTGTTACTCCTTCTGTTCCACCCATGAAGAGTGCTGATCCCTGGGCATCAAACTCTACTCCTGCCGCTGACCCCTGGGGCTCCGCAGCCGCCCGCCCCAAAACTTCCAACACAGGTAGCTTTGACCTGTTCAATGCATCCAACGGTGATGGGGGCGTAGcatcctctctcccctcccaagCCAGTCtcgctagcagcagcagcatggacCTCTTCGACCCCCTGCCCAGCTCCATTTCTATGTCTGCCACCACAAACCCGACTAGAAAGACTCCGGAGTCCTTCCTGGGTCCCAATGCTGCCCTGGTCAATCTGGACTCCCTGGTGACCAAACCAGCCCAGCCTGCGCCAGTTGTCAACCCATTCTTGGCTTCAACAGGTGGCTCTGCTCCagctcctgctccagcttcagCAGCCCACGCCAACCCCTTCCAAGTGAGCCAGCCAGCCCCCCCGACCCTCAACCAGATGCGGGTCAGCCCCATGCCCGCCAGCTTTGGCATGGCCGAGCCCATGGCCATCTCCTCGGGGCCCGCACAGCCCATCACCATGGTCCCCCTGGCAGGCATTGCCCCCATGGCCCGTGTCATGCCCGGGATGGTCGGAGGTGTGGGGATGAGTGCGGGGATGCCGGGCTCCATGTCCTTGCCCCAGCCCCTGATGAGCATGCCACCCCAGGCCGGGACGCAGCCCACGGGAACCACCAACCCCTTCCTTTTGTGAGGGGGTGACCGGGGGGGGGGCGACTTTCCCCATAGTAacaccacctctctctctcttactctctctctcttccacttTGGCTCCTTAAGAAGCTTCAAAATGAACAAGGAGATATCTTATCCCATCAATCCCTTAATAACCAACTCCTAGCCAGGTcgtagtccccccccccccttaacaCACTCCTTCCTCCTTTGTCTCAATGCTACAAGCTGCCTAGTCCTGTGTGCTCCATATTGATCCGACGATGGTGTTGATGACCGCGGAGAGTTTTAATCTGTCTATGGATTTACACAGTAGCAGTGGTGTTTACAGTCTTTCCACAGAGACGGGGCccctcctccctgtctctcATTCACTCGCCTCCTCTCCCTCACTTCTTCCCTTAGGACTGCTCtgttcttcttctgtggtgGAGTGACAGGAGAGTCTGACCATACTAACGCCAGGATCTTATCTCTTCACTTGAGCTAATCTTTTATAAgccctgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatctcagTACTTTTACCCTGTATATTCCAGTGGGTTTTACTTATACACACTGGAGTACGGATGAGAGGtcagtgtgtttatatatatgtgtgtgtgtgtgttttactaaGCAGGGATTTTGCACAATTTTatgtctatttttatttttttttctgtctgcgACTGTTGGGCTCACCGTTACACCTTAGCGTAGGGAAGGAGGCTAGCCGCTAAAACGGCTTAAACAACACACAGCCTCAGCTCTCGGTACCACTCGGTCACAACTCTCATCTGGTCACTTCCTGTCAACTTGGACCTTTTTTCCGATCCTCCACGTGAACTTTGACCCTCCCGTGGTCACGGGATTAACAATGAACATTTATCAAAGGGGGTGAACCCCTTGGCCTAGGGATTGAAAAGATGCGTAAACGCAATTTCTGTCAATGTGTGTGCGCCCACACGCAGGTGTACTGTTAACGCTTGGATACTAACGGCCACACGTTGATGCATTTGTTACTAAGTCTCCCCCAGTGTGCATTTagataaagaaaaataataataaaaatacatgaACTGAGATGGCATCAGTATTTTGCTATCGGAACATATGGATGCACTGAGGCATCGTGGgacagtttttttcttcttctttttagttTGTTTCTAGGGTCAAAGGGAAAAGGGTGgggtgtgtgcgcgcgcacagtTTGCATGAGAGATACGTGTAGCTTCCAAGTGTACTTCAATTTCTCACCCAGTCAGTAGAAACCGACTTAGAAACGGCTTTAGGTAGTTTCTGAAGTGCAAGTAAAAACGGGGGAATAATATAGACATCTGCattaagtctgtgtgtgtgtgtgtggggggggtgtgcttgcatgtgttttttgtgCAACCATATATCAAGGAGTGTTACTATGGTGACAGGGTTGCCGAGCAAGCTCTGGGTTTAAAGAGCAAGTCAACCACTCGGCATCGTGAAGAGAGTTTACCTCCAAGTGGATTTACTGTGGCTAATCTATGTACAAGAACATTACCGGGTGGACACACACCCactcgcacacactcacacagggcAGTTCCAGGATCGGTCTATTGATAGCACAGGGAATCCCGCAGCAAACAGTGACACATGTCATGTAAACAAGCCGTTGTTCATTTTGTTGGTCACTTTTTGTTGTGGTTATTTACTAATTTAGATGTAAATCCATAGCCAAGCCTTTTCAGAGTTTTGGAGCTGTGTGCTAGCTAAGCCATGTATCATCTTCATTCTCTCTTTTGTCTATTTTCTgtcattgtagttttttttttttttcaccctatGGGTAGGCTACATAATTCTCTTCTCTTAGAAGCACAACTGTTACCAAAGTCATAGGGACTGTGATTTCTGAGGGTGTCGTACTTTAAATAGTTTGAATAGTTTAAACAGTAGGGTCACACttcactgacattttttttttttttctgttcatcGATCCAttggtttttatatatatatttcagtgCTAATTTACAGTTTGTTCAAGAGTTTGTGTAAGAAAGTGTTACTGTTGGCTGAATATCGGCACATTTACTAACGGTAAGCTAAGCGTCTGTCTCTTCTATTGGTTAAAAAAAGTGGGTAGTTGAAATTCAGCTGATGAATTGCACCCGGTGTATAGATCCTTCTCTTTAGGTTGCTGTTCCCCCCCACTCTTCAGTTCTGGTGATATCACTGCCAATGTTATTACTGTGGAGgtggtgttttttctttttccttttggtGTGCGTTGGCGCCCTCTCCTGGTCTGCTGTGGTATGATAGCTACACCACAGGACCCTTGGTATTTCCACTAAACACAGACTTTCATTTCTCTCAGGCAAAAGGAGGGGCAACTCCAACCGTGTGTATGATTTTTGATGATGCTGAAGGTGGGTGATGATGATTTTTAATGCTCGGGGTCCTGAATGAATGGATGTGACACTTACTTGCAGACCAGCAAACATTTTTAATCTCAACTAAATATATGCAAAAATTGGAGttggaaaagtaaaaaaaaaaagataagactTAACGCTTGATGTGTTTTGCAAAGTTAGATTTGCTAATAAAGTCTTGTTTATTAAAATGCTACTATGATATACTAGCTAAGACTTCCTCACTGGCCTTGATTTCACTGCGGCCTGACCTTTTAACTTCACTCCAGCGATTTGTGAAAAAGGTTGTTATGGATGCATTGAAAACACAAAACGTAAACATTGCTGTCTTGAACAAATTCAGCACTCCCAAACAGTCCGATGTCACTGCAGTTGAACACTTTTTCTTGATCCCTGGCAGCAGTTTCACAGTCGTGGCTATGGTGCAGTGAAAATGTGGCCTGTGCGTAGCGAGCTCCTCTGCGTGTTACTATGTATTCACTATGCTTTTATCAAGAGGACTAACTGACCTTATGGACTGTCTGTCTTTATATGCATAAACGGCCTCCTTTTAATCTTTTCCGTGTCTGTCTATTTACCCTTCTCATAGTACTGGGAGcaggctgctttttttttttttattggatatGTGCTCAATCTGTTGGCATTATAActgtataatataatttatcATTTGTACTATTGTAACATACTGTTCCTCTGTATACCTTATTATTCTGTGTAATGGGTTTTTGTAGGAAAAGTCACCGTGGTATTTTAACGGCATCTAAACAAATGAACGCAGCAGGCCGCACCCTGTTGGATGAGGACATCTGTAGCTGCTTtggttcaaaataaaatgtatcacTTCAGCTCTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207007 lncRNA downstream 308381 7570643 ~ 7625078 (-) False grin2aa
TU207003 lncRNA downstream 308465 7569718 ~ 7624994 (-) False grin2aa
TU206913 lncRNA downstream 454845 7478319 ~ 7478614 (-) True G152756
TU206905 lncRNA downstream 563606 7367794 ~ 7369853 (-) True G152748
TU206894 lncRNA downstream 576621 7330810 ~ 7356838 (-) True G152738
XR_005641917.1 lncRNA upstream 98606 8063001 ~ 8066280 (-) True LOC120574882
TU207058 lncRNA upstream 123531 8087926 ~ 8092269 (-) False G152863
TU207059 lncRNA upstream 123531 8087926 ~ 8092269 (-) False G152863
TU207063 lncRNA upstream 123531 8087926 ~ 8092269 (-) False G152863
TU207064 lncRNA upstream 123531 8087926 ~ 8092269 (-) True G152863
XM_039824206.1 mRNA downstream 64577 7745774 ~ 7868882 (-) False LOC120574112
XM_039824208.1 mRNA downstream 64578 7745751 ~ 7868881 (-) False LOC120574112
XM_039824204.1 mRNA downstream 64582 7739579 ~ 7868877 (-) True LOC120574112
XM_039824205.1 mRNA downstream 64583 7739579 ~ 7868876 (-) False LOC120574112
XM_039824234.1 mRNA downstream 209545 7569826 ~ 7723914 (-) True grin2aa
XM_039825376.1 mRNA upstream 87596 8051991 ~ 8071142 (-) True LOC120574881
XM_039825380.1 mRNA upstream 109110 8073505 ~ 8085943 (-) False LOC120574884
XM_039825382.1 mRNA upstream 109110 8073505 ~ 8085943 (-) False LOC120574884
XM_039825379.1 mRNA upstream 109110 8073505 ~ 8085943 (-) False LOC120574884
XM_039825381.1 mRNA upstream 109110 8073505 ~ 8085943 (-) False LOC120574884
TU206683 other downstream 1212816 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 1705345 6182408 ~ 6228114 (-) True G152441
TU206279 other downstream 2319791 5574680 ~ 5613668 (-) False atp5mf
XR_005641918.1 other upstream 117743 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 476784 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 767002 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 847947 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 889365 8853760 ~ 8856957 (-) True tufm

Expression Profile