RNA id: XM_039824398.1


Basic Information

Item Value
RNA id XM_039824398.1
length 6327
RNA type mRNA
GC content 0.48
exon number 31
gene id spag9a
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10738908 ~ 10772253 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGAAAAGCATTTGAAGGCAGCACGGGACAAGTgagggaaagaggaaggaaTCCACGTACCCAATCTTCCATCGCAATAGTCCAGCCGTGTAATGTCCTCAATGTTTAACGCTACGGCTATTTGATGAAACGCTGCTTTCAGTTAAGCGGATAACGGTCTTCATAGTGGCGGGGTGACGCGGAATAACCCACATTGGTCCAGTTTGCTGAACGGGAGAGGACTAAAATGGAGCTGGAAGACGGAGTTGTGTACCAGGACGACCCGGGGACATCAGCGATGATGTCTGAGCGGGTATCGGGCCTGGCCAACTCCATCTACCGCGAGTTCGAGAAGCTTATCGGGAAATACGACGAGGACGTGGTGAAGGAGCTGATGCCGCTGGTCGTGGCCGTGCTGGAGAACCTGGACTCGGTGTTCGCCGAGAACCAGGAGCACGAAGTGGAGCTGGAGCTGCTGAAGGAGGACAACGAGCAGCTCATCACCCAGTACGAGCGGGAGAAAGCGCTGAGGAAACATGCAGAGGAGAAGTTCATTGAGTTTGAGGACACTCACGAACAGGATAAGAAGGACCTGCAGAACCATGTGGACAGAATGGAGTCCCACTCGCGGCAGCTGGAACTTAAGATCAAGAACTACGCAGACCAgaTTGGCAGGTTAGAAGAACGTGAATTGGAGCTCAAGAAAGAATACAACTCCCTCCATCAGCGACACACAGAGATGATCCATAACTATATGGAGCATGTAGAGAGGATCAAAATGCAGCAGATAAGTGAGACTTCAGAGTCCAGCGCGGTCGGCCGAATCAGGAGAGAGCGGCCTCTTTCTTTGGGGATCTTCCCATCACCTGGTGGACCGTCTCTGCTAAACCCAGACCCCCAGGCCAGGGCAGAGACACCGGGCACAGAGGGCTGGAGGTTCACCGACCCGACGCGGTCCAACTCTAGCCTCAAGCAGTTGGACTTTGTCAACCCCCCAAAGGAAAGGGAGGGTAAGAGTGCGCAGGACTCTACTTGGGGGAATTCACTGGCAGACGACTGCAAGGATGAGCTGTCGGACTTCACTGGCTCGAAGTTGGCCACACCAATGTCCACCACGACCTCGGACATGGAGAGGGAAGAAGGGAACAGTAAGAGCACGGAGGTGCAAGCTGCACCCGGGACCAGATCCATATCAGTGGGTTTGCCTGAAAATGAGGACAACTCAGATGTGCAGGACATCATTGAGTCCACCCCTGAGCTGGACATGGACCTCATTGGATACAAGCCCTGCAGTACTCCTACTAAAGGCATTGAGAACATGGCATTTGACCGAAACACAGACTCTCTGTTTGAAGAGCTGTCCTCTGCAGGCACTGGGCTCATAGGGGATGTGGATGAAGGGGCCGACCTGCTGGGTATGGGCCGGGAAGTTGAAAATCTCATTCAGGAGAATTCACAACTGCTCGAGACAAAGAATGCTCTGAACGTGGTGAATAAAGACTTGATATTGAAGGTGGACGAGCTGACCTGCGAGAAGGAGATGTTGCAGGGAGAGATGGAGGCTGTGCTGCAGGCCAAGACCAAGCTGGAGGACAagaacagagagatggaggaggaacTCAAAAAAGTGCGACTGGAGGTGgaggaaataaaacacaaaagtaAAGATGAAGAAGATAGTGATGTACCTACAGCCCAGAGGAAGCGCTTCACCAGAGTGGAAATGGCCCGAGTGCTGATGGAAAGGAATCAGTACAAAGAGAGACTGATGGAGCTACAGGAAGCTGTGCGGTGGACAGAGATGATCAGGGCCTCAAGAGAAAATCCAACActctcagaaaaaaagaaatccagcaTCTGGCAGTTCATTAGCTTCAGCAGACTGTTTAGCTCCTCCTCCAGTTCGCCGGCTATGAAGAAGGTGGAGTCCCAGTCCAACATGAAGTACAACGCCTCTAGCAGCATGGTGAAGAGGAGTAGCACCTTCTCTCAGTTCCCAACAGAGAAGTCCAAGACTTTCGACTTCCTCAATGAAGAAAAGGACCAGTGCAGCTCGCCATCGCGtaaagagcagaagagagcCCAGTACAGACAGGTCAAGGCCCACATGCAGAAGGAGGATGGACGAGTCACGGCACACGGCTGGAGCCTGCCCAGTAAATACAAGGTGGCAAATGGTGGACAGGTGGAGAACAAGATGAACTTACCTGTACCAGTGTACTTGAGACCGCTGGATCAGAAAGATGCTTCCATGAAgCTGTGGTGTGCTGCAGGGGTCAACCTGTCTGGAGGGAGGACATTACCAGAGCTCATGAGGCAGATGAAGGGTTCTCAGAGTAGCCTGGACCAGTTAGAGCAAGAGAGTAAGGATCATGAGAAAGGGGAGCAGGAGAAGGAGCTGGTCCTTCAGGACGAGACATCCAGTAGGGTGTGGGTGTGCACCAGCACCCACTCCTCCACCAAGGTGATGGTGCTGGATGCCAGTCAGCCCTCTGACCTACTCGACTGCTTCTACGCCTGCAACACCCACGTCGTCTGCATTGCCAGCGTGCCAGGCGTGTTGGAGTCTGATTATTTGGCAGGTGAGGAGGTACCCCAAGACCTGGAGGCTTGCCAAGGTGACGGGGTGTCACTGGCCGGCAGCGTGGCCAGCGTGGGCTCAGCAGGCAGCGATGGTGCCATGGCAGCAGAGGGGACCACTGCCATTCCCCAGACGGCCAGCACAGGTGTCACCGACCAGCCAGCTGAGCACAGCGGCATCTCTAGCTCTGTTGAGCTGTCCAGAGAGACCAGTCCAGCAGAAGACGGCGTTCCTGCGGCGGAAGAGGCAACGGAAGCAACGGAGGCTAATGCTGGCGTTGGcgaagaaggagaggaagaccAGGGAGCGGATCAAAACCAGCCAGGAATCTATACGGAGCATGTGTTCACTGACCCGCTGGGGGTGGGACCCACTGACTCCCCTTCTGCTGACGCACAGAGGGGCTGCGGGCATGATGACGAGACTTCCTTTCCAGAAGTCTCCAACCCATCAGACGGGGAAGTTCTGAGGATGAGCAGCGCCCTACCCACCATGTGGCTGGGAGCGCAGAATGGATGTCTGTATGTGCACTCGTCTGTGGCTCGATGGAGGAAGTGTCTCCATGCCATCAAGCTGAAAGACTCCATCCTCAGCATAGTACATGTTAAAGGGAGAGTCCTGGTAGCTCTGGCTGATGGGACATTAGCAATTTTCCACAGAGGCATTGCAGACGGTCAGTGGGATTTAACCAACTACCACCTGTTGGATCTGGGTCGGCCCCACCACTCTATCCGCTGTATGACCGTAGTCCATGACAAGGTGTGGTGCGGCTACAGGAACAAGATCTACGTCATCCAGCCTAAGGCCATGAGGATAGAGAAGTCGTTTGATGCTCATCCTCGCAAGGAGAGTCAGGTGCGGCAGCTGGCCTGGGTTGGGGACGGTATCTGGGTGTCCATCCGACTGGATTCAACTCTACGCTTGTTTCACGCCcacacctaccagcacctccaGGACGTGGACATCGAGCCCTACGTCAGCAAGATGTTGGgtaCGGGTAAACTGGGCTTCTCGTTTGTGAGAATCACAGCTCTGATGGTGTCCTGCAGCCGACTCTGGGTGGGGACAGGAAACGGCGTCATCATCTCCATCCCTCTGTCTGAAGCCAACAAGACAACGGGAATAGTGCCAAATCGGCCCGGCAGTGCTGTACGGGTTTACGGTGATGACAGTTCAGACTGTGCCATGCAGGGCAGCTTTGTGCCATACTGCTCCATGGCCCACGCCCAGCTGTGTTTCCATGGACATCGAGATGCTGTCAAGTTTTTTGTCGCCGTGCCAGGTCAGGCGATGCCCCCTCCAGGCAGTGCCGATTCAGGCTCTGATGACCCTCCATCTGAATCCTCTGACACAGCAACCTCTGAGCCCAAAACATTCCTGGTCATGAGTGGAGGCGAAGGCTACATTGACTTCAGAATGGGCGATGAAGGCGGCGAGTTGGACGGTTTATCAGAACCAACAGCCAGCCAGCAGTCCCCACCTACCAAGGCCGAGCGAAGCCACCTCATCGTCTGGCAGGTCACAACCTCACATGactgaaagaagaaaagaaaaaaatcagacGGTTGTTGTCAACACCACGGCCGCCCACCAAACCCCCCGCATGTCCTCCTCAAAGTTTTTAATTTGGTATCACTGATTGTTCTTAATGCCGGAGTCGTTGActactttgtaaaaaacaatatttttagtCCATGTTTTGTACAGTTTATTCTTTATGAATTTGAATTAGGTAAGGTGAGGTTTATGTTAACTTAAAGAATACGTCCAAGGTCCAAGTGTTCCCTTCTGCTGGTCTGCATGTTGGAAAAGCCGGTGCACACTGGAAAAGGCCAAGTTAATGCAACTAAAGTTGTGGGCATTGTTTGATCAGGTAATGTATGGAAGTTGTTGGTCTCCCAAATGTTAAACAAAAGGGTTTAGATGTGAAAGATAACAGGGAAAAGCGCTTGAAGCAGTTTTGCGGTCATTAAAAAAGGAACCGAAAGTTAAATTGAAGTATAGTTTCTACATTATACACATAAGACTTTTTGTCCGTAAGTATatgagcatcaggtgtgtgtatgcattcactgatcattattattattattttcttaaccattAGGGCTGGGTGTCAAAATATGTCTCCTGCAAGTCAAAATGTATAAACAATTTTAAAAGGTTAAATTCTTTGAATGTGTTATCTGAGGCTGATTACTCTACTGTACACTCTGATTATTAAAAAGCAGATTACattaaatgtgattttattCAGCAAAAGTCGGATAAAACACTTTGAGAGGTTGTATTAATATTGAGTGACACCGAGCTCTATTTGCCACAGGTCTACGTTTTATGACATGAATAATGTCTAAGCAGTTTGGGTACTGCTACTGAATAGAGGAACCAGCTTACTGTACTGTAGGTTAGCGTTAGCCTGCATGGGGAAATTCTGTATCCTCGTCcaagtgtgtgtttgcctgctCGGATGTTTTAAGCTAAACCCTTGTCTGTCGTGTGAGGGGAAATCTGCCTGTGCCACCAGCTTGGTGCTTCCTGTTTGCTTCAGTTTATtggcactttaaaatgttagatGTTAGTCGCTTGAGGTTTGGAAGAACACCCATGGTAATGTACACCACACTACTATGTTTTAATTGTGTTAAGGGAAAAATTTACAAATATGGGTAGCAAGGTGTCACCGAAGTAACCAAAGGACGAAAGAAGAAGCACCGTGAAACtgactatttcattatttttatgttttgctACTTAAAACGTCTTGTGATTCTAATAATTTGAGGGTATACATGTGTATTTTCAGGGCGTCATCTTATTGGGAAATGAGCTTGAATAAGGGAATTTGTCTAACATTTTTGTGAGGCACCTTCTAATGGACATGGACACAGCACTAAAGGGAGTCTCTGTTGATTGCTTCATCATTCCTTGTTTTCTAAATACATTTGGAGGCCAGGAAGGcaattattgtcattatttttatggttgttattttgttgttcATGTTTTGTATCATGTGCGAGACACTTTTATTAAGTATTTTGATGATGACTGTAACACGATTGCAGAATACCAATATTAAGCAGgtgttttaaatttgtttttatatctgAAAAGTTGGGCCAAGATTGGTCTTCAGTCCATTTCAAAATAGTAActttctattttgtttttgccATTCCAGTATTTATTTCCTTTGTTATGGAACCTATCTTGGTTCAGAATGTAACTTTCTACGTGAGCAAAATATAATGGGAGGCTATTGTAAACAAAATAGTCCAGTGAGTTACGTGATTGTTGATAATGGTCAAATAAAAGGAATAAATGTAATCATGTAGGAAATTTCTGACAAACCATGAGATCAAAGTGTGCAAACAATAACTTGGTGGTTTTCACTCATTCATGTACAAAGCTatgcatgtttttgttttttaaagaggaCACTGCTATGTTTTCAGCTAAATCTCTGTTTATTGCCACCGTTTTGGGTGGGGTGGATGTctacatgtatgtttgtgtacagTACATTGTGTACATGTTGGAGTTTGAACGCAGGACAcatttgtcagtgtgtgtttgattttGCAAATGtgcggtgtatgtgtgttcacTGTATGTCCATCTGTAATACCCCAGAGACTGGTCACATTTACTCGTTGCACTGGGCTTCTCTGGACGCCATAACGGCGGTTCCTCCTGgtcaatgtttgctaaaacaGCATCATAGCCTTATTTTTAACAATCTATTAAACTCAGTTTCATGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208277 lncRNA downstream 143901 10594743 ~ 10595007 (-) True G153734
TU208203 lncRNA downstream 444742 10286635 ~ 10294166 (-) True G153671
TU208192 lncRNA downstream 569469 10163444 ~ 10169439 (-) True G153663
TU208150 lncRNA downstream 700123 10034440 ~ 10038785 (-) True G153631
TU208147 lncRNA downstream 711209 10025317 ~ 10027699 (-) True G153630
TU208577 lncRNA upstream 133102 10905355 ~ 10907608 (-) True G153937
TU208598 lncRNA upstream 178318 10950571 ~ 10959521 (-) True G153950
TU208584 lncRNA upstream 260953 11033206 ~ 11035516 (-) True G153943
TU208656 lncRNA upstream 296790 11069043 ~ 11073776 (-) True G153987
TU208730 lncRNA upstream 499566 11271819 ~ 11272848 (-) True G154036
XM_039825340.1 mRNA downstream 61618 10673342 ~ 10677290 (-) True LOC120574864
XM_039825337.1 mRNA downstream 120851 10608998 ~ 10618057 (-) False luc7l3
XM_039825336.1 mRNA downstream 120852 10608998 ~ 10618056 (-) True luc7l3
XM_039824227.1 mRNA downstream 348775 10352158 ~ 10390133 (-) True gtpbp1
XM_039825974.1 mRNA downstream 563045 10166712 ~ 10175863 (-) False gtf2f1
XM_039824730.1 mRNA upstream 12018 10784271 ~ 10791565 (-) False LOC120574455
XM_039824726.1 mRNA upstream 36054 10808307 ~ 10811425 (-) True LOC120574453
XM_039824727.1 mRNA upstream 36054 10808307 ~ 10811405 (-) False LOC120574453
XM_039824728.1 mRNA upstream 40600 10812853 ~ 10820285 (-) True LOC120574454
XM_039824607.1 mRNA upstream 159545 10931798 ~ 10941167 (-) True dhps
TU208212 other downstream 348732 10360812 ~ 10390176 (-) False gtpbp1
TU208206 other downstream 348788 10360801 ~ 10390120 (-) False gtpbp1
TU208205 other downstream 348788 10360812 ~ 10390120 (-) False gtpbp1
unassigned_transcript_828 other downstream 915915 9822145 ~ 9822993 (-) True LOC120574648
TU207919 other downstream 1000421 9737970 ~ 9738487 (-) False LOC120574579
TU208443 other upstream 11859 10784112 ~ 10791539 (-) True LOC120574455
XR_005642003.1 other upstream 195853 10968106 ~ 10968174 (-) True LOC120575512
XR_005641868.1 other upstream 306334 11078587 ~ 11080606 (-) False LOC120574486
XR_005641867.1 other upstream 306334 11078587 ~ 11080606 (-) False LOC120574486
XR_005641866.1 other upstream 306423 11078676 ~ 11080606 (-) False LOC120574486