RNA id: XM_039824497.1


Basic Information

Item Value
RNA id XM_039824497.1
length 4058
RNA type mRNA
GC content 0.55
exon number 14
gene id LOC120574253
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4493584 ~ 4505527 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgctgctGTTTCCTCTGTCCCAGTGTTTTGGCGCTCAAAGAAACTCTTGTTTGAGATGCGTTTGAAACCAAAAGGATACAGCTTCGGTGTCCTTCTCATGTACACCATCACCATAACGAATGTAACGCCAGTGGGTTCCTCCCAGCCAAACTCCCATTCACTTCGCAATGACGGGAGCAGCGTTTTAACGACCAAAGGCCTCGCTCCCAGCTCTCACCGAGAGAGCACAAAGCGGCCACGCTTCGACTCAAAGGCGGGAGAAGAGTCGAGAAATCCCCCGGGCTTTCACATCTCAGAAAACCGGTACGGGACACCGACTGAAACCTCGGGAGGGCCTAAACAGACACTCCAACCAAATATGGCGTCTACTTTAACTGACGAAAGCTTCCAAAACCGTGACAAGTGGATGCTTGCTTCGCTTAACGCTCCAAATGAAGACTGTAGCAAAGGGGAAATGGAGCAAGTCCTCCCCGGCAAGTTTTATGTTACTGGTCAACTGGAAACCAACCCTGATGTGGGTTACCAAGCAGAGTCTGCCGTTTCAGGTCTGGCTCAGGGAGGCCAGGAGAGGACCAGAGGCCAGGAGAGGACCAGAGGCCAGGAGAGGACCAGAGGCCAGGAGAGGACCAGAGGCCAGGAGAGGACCAGAGGCCAGGAGAGGACCAGAGGCCAGGAGAGGACCAGAGGTCAGCGGCTCCGCGACTCCCAGGAGTGCTGGCAGAGGCTGCAACCCCTGGTGGAGTGTGGAGACGCCGCCATGACCCTCACTGTCAGGAGGAGACGAGCTGTACAACTCCAGCTGGACAGAGTGAATGAGTCATCCGTGACCCTGTCCCGGCTGCCGCCACAGTGTGGCTACTCGGTTCAGACCACATGGAGAGACCTCAGTCTGATGGCTCAGTATGATGCCTGCCATGTCACACAGGAGGATGACAGTTTTGTGTTGCCTCTGCTGTGGATGGGGACTCCGGTCAAGATGTCGTGCCCAGCCTCTCGGCTCCAGCCCGTGGGGGTGGGCCTGGGCCCGGGCCCgtcctccctctgctgctccccGCTCGCTATGACTGTCAGAGTGCAGGGACTCCATGCTGCAGAGGATCTGAGGGTAAACGTGAGAGGAGAATGGACCCCTTTGGTGGTGTTGGCTGAGCGGTGTGGCTACACTCTGGACAGACGGGATGCAGAGATCGTTATCACTGCTCCATTCATTACATGTGGCGTCACAGTAAAGgatGGAAAATACACACTTTCTCTTCAGGTAGGAGAGAAGACCTTCACACTGGCCTGTCCTGTCTCTCCCCCTGAAGAACTCCCACTGACCCCTCAGCCTCAGGTCGAcagcccccctccccctcctctaaCCAGAGGGCCAACCGAGCATGTGCCGGATCCTGTGGAGCCTTTTCCCTGGGCTCCTCCTTTCTACCTGGCCCCGCCTTACTATCCCCACCCTACATCTCGCCGCAAGTATCCTCGCTCTGATGGACACGATCCAAATAACCCTCCTACTCCCTCATCTCCGACTCCTCCCCCTACATTTGTTCCACAGCCTCTCCCTCTTATTGACCACTACCCCCACCACATTCCTGTGAGGGAGTCTTATAAACATTTCGGGAGTGTCCACGGCTCTCTTTCATTAACAGATGATACGGAGGATTCAAGTCGGGTGTATCCAGAGCTGCAACGAAAGCGAGAAACTTCCCCCCTAGGCGTCTCTGAGAGTGCTGCACGTTCTCCCTCCTCAGATACAGGCTTTCCGATTCAAGTTGAACCTCCTCTCCAGCCCCCCAGCCATGCCTTCAATCCATACTATCACTACTACCATCACCCTAAAATCCCTCTTCCTGGCCCACCTGAAGACCCTGAGGTGCCTAGAGAACCCTCTCTAAATAATCCCCATAACCCCGAATATCCTGCGTTGCCGCCCAACGTGCCGCAGTCTGAGGCTCTCCGCAGAGTTGACGCGCACCAGTTCCTTCAGCCCAGGACCGAGGCTGCCGCTCACCCTCGCACCCTTCCAACGAGTCCTCCCAAAACCTCTGCACCTTCTACACCTCATCCTCCACAGCCCTCTCCCTACCACTACTTCTACTACTTTCCACACGTTGCTCCGGGCGAGGTCAAAACATTTGCTCCTTTCGAACCCGACGCATCTCCAGAAACACGTTTGTCTGACGATCAAAACGCAAAGCCGAGCACGTTTGGTCATCAGCCGCTTCCTGGCTCATCACAGGTTCAGCACGATCAGCCAGAGAGTAGTATTAACTTTCTAAGAGATGGCCCAGAAGGGATCAAACCTCCACTTTTATCTGAAAACGATGACATTAATAACGATGCTGTAAAAGCAGAGCTGGATGACAAAAATAGTCCCTCTGTCCCGGTGAGTCCAGCCGTCctgcctcccctccctcccgcTCCCCCTCCTGGACCAGACGCTGCTCTAGTTCCTGCTTCTGATCCGCCCTCTTTCCCCACGCCATCACCCAACCACAATCTTCCTCCTCACccgtactactactactactactgctactaccaCCCATCTAATCCCTACTATCAGATGTGTTATGGACCCGACAGTCACGCGTCTCCACCTTTATCCAAAGAAGCTTTGGACCCACTGCTCCAAGCATCTTCCTCCCCGCCACAGCATCCGTCCTATCGCAAACCTCGAACCACTACTTTACCCACAAAGTCGATGCCTGACGTTCACAGTGGCCCCGTCCACccttactactattattattacccCCACTACCACCAGCCCCAAGTGTCTGCACACAGCCAGGAACTACATCCTGCAGGCACCATGACCTCTGGAGGAGACTCATCAAAAGCAGAGTCTCTGCTCCCTTCAGACTCTCACCACAGCTGGGTGGATTGGCATGTTCGTGCCGCTGAAGCAGGATATCCCAGCATCCCTCAGCCACTGCACAGCCCCTCTCATAGCCTCGATTCCCATTCTATCACTCAACAACATCTGTATGATCTTTTTGGGCATCCTGGTggagaagaagcagaagagAGGCTGGATCGTGAAATGAGAGATCACCTCGGGGCCAACCCGTCCGCTCTCTCGGCCGCGCCCTGTGCCCTTGGCCATGTGTCAGATTTTGACTGCAGTGCCTCTTTGGGCTGCTGCTCATACTCTGTGAAGGacTGTACAATGGGACAGCATTTCATCTTTCCGGTGCCTGACTCTGTGTTGGAGCCCACAGTGCCCCCCCCTGCTCATCCCTCTGAGCTCCGTAATGTGTCCTGCACACTGCAGAAGCTGACCTCAGACCCCGACATCTACGCTGTCCCTCTGGATGGCTGTGGAGTAAAGAAACATGTGTTTGGTCAGACAGTGGTTCATCTGTTGGAAGTCCACGGTCTCTCTTCTCTTCAACGAGGCCCCAGTTCTGTGCATGAGAACTCTCCTGTCAGGTTGATGGTGGAGTGTCGATCCTCCCCGGGGTGTCCAGGTGAAGTCAGGCTCAGTGTGATGGAtccccctcctccacccccCCTTCACTCTACACCAGCCACTATCACTGTGCAGCTGAGAATTGCCACAGATGAGTCCTTCACCAGCTTCCACCCTGAGGCCCACCTGCCTCTCAGCCTGATGCGAGACCGGGCAGTTTATGTTGAGGTGAGCCTGCTGGATGCCCCGGAGCCCGGCCTGGTGCTGCTGGTTCACTCCTGCCTGGCTTACATTCCAGCTCCGTACAACAGCTGGCTGCTGGTTTACGATGGCTGTCCCGGCCGGGGGGATTCACGGCTACTTGCTTCCCCACACTCTGACCCCCACCACATCCGGAGGATCGTAATCTCTGGCGTCCCACCCCTGCCCTCTGAAGGTCCCTCCCACATGGCTGAAGGAGGATACGCTCACCTGGAGGACCCAGAGATCTATTTCTTGTGCGTGACAGAAGTGTGCTTGGCTGCAGATGGTGACTGCGCTGTCGGCTGCATCTCCAGTGAGTTTAACACCGCGGAAACATACAGGAGAAACTGAGTGGGTCCTAACAGTGACGTGTGAGAAATGAAATAAACACTTTAACACAACTGCa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205645 lncRNA downstream 14705 4477384 ~ 4478879 (-) True G151785
TU205629 lncRNA downstream 59723 4424512 ~ 4433861 (-) True LOC120575466
TU205640 lncRNA downstream 80424 4411516 ~ 4413160 (-) False G151783
TU205642 lncRNA downstream 80424 4411516 ~ 4413160 (-) False G151783
TU205643 lncRNA downstream 80424 4411516 ~ 4413160 (-) True G151783
TU205652 lncRNA upstream 13254 4518781 ~ 4522424 (-) False G151790
TU205653 lncRNA upstream 16306 4521833 ~ 4523574 (-) True G151790
TU205665 lncRNA upstream 77677 4583204 ~ 4584160 (-) True G151799
TU205683 lncRNA upstream 256205 4761732 ~ 4765493 (-) False LOC120574081
TU205827 lncRNA upstream 364360 4869887 ~ 4893318 (-) True G151924
XM_039826271.1 mRNA downstream 28593 4417976 ~ 4464991 (-) False LOC120575466
XM_039826268.1 mRNA downstream 28593 4417976 ~ 4464991 (-) False LOC120575466
XM_039826269.1 mRNA downstream 28593 4417976 ~ 4464991 (-) False LOC120575466
XM_039826267.1 mRNA downstream 28593 4417976 ~ 4464991 (-) False LOC120575466
XM_039826275.1 mRNA downstream 28593 4420748 ~ 4464991 (-) False LOC120575466
XM_039823857.1 mRNA upstream 22925 4528452 ~ 4539716 (-) False LOC120573943
XM_039823858.1 mRNA upstream 22925 4528452 ~ 4539360 (-) True LOC120573943
XM_039824328.1 mRNA upstream 36763 4542290 ~ 4560444 (-) False tcf20
XM_039824327.1 mRNA upstream 36763 4542290 ~ 4560444 (-) True tcf20
XM_039824147.1 mRNA upstream 79646 4585173 ~ 4757096 (-) True LOC120574081
XR_005641996.1 other downstream 28593 4418726 ~ 4464991 (-) False LOC120575466
XR_005641995.1 other downstream 28593 4418968 ~ 4464991 (-) False LOC120575466
TU205631 other downstream 65283 4416177 ~ 4428301 (-) False LOC120575466
TU205621 other downstream 126251 4361848 ~ 4367333 (-) False LOC120575464
TU205622 other downstream 126251 4361848 ~ 4367333 (-) True LOC120575464
TU206002 other upstream 672789 5178316 ~ 5227241 (-) False G152043
TU206001 other upstream 673537 5179064 ~ 5183655 (-) False G152043
TU206003 other upstream 673537 5179064 ~ 5187041 (-) True G152043
TU206084 other upstream 956319 5461846 ~ 5464418 (-) True G152114
TU206270 other upstream 1043791 5549318 ~ 5554250 (-) False top3a

Expression Profile