RNA id: XM_039824585.1


Basic Information

Item Value
RNA id XM_039824585.1
length 1715
RNA type mRNA
GC content 0.47
exon number 7
gene id ccdc97
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6345320 ~ 6350264 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGGGGGGGGCAATAATTATGACGGACCAACATGGCGGAAAAACATAGCTAATGCTAAACAAGAGAAGCGAATGTTTGTAATTAACttgttaaaattacatttttcacgCGGGAATGTTCACACTAAAGAGACAAATTTCCAGCCATTTTCGGGGTCTATAACGTTAAGGTCAAGAATAACCTGACAACGTACGTAATCGTTACGTTAGGTAGCTAGTTTATCGCTAAAGTTCGTTGACCGTAGCTTTCTACTATAGGAGCCACTGGAAACCAGTTAGTAACCTGGTTAACAGTCCATTATGTGGGGAGAAATCGATCCTCCAGTTAAAACACAACCGAGTTTGTGTGAAAGTGAAGACGAGAGTGAATTACCAGAAGAACCGGTGACACGGTCCCAGCGATGTGACTTCCACCAGCCCGCAGACACCCAGCAGCCACGACAAGACACTCCGTACGTGAGCCACGCTGAGTCCATTTGCGTAAATGACATGGTAGAGTCCATAGCCAGGAGTGGAAGCCCAGTGAAGAGCCAGCAGAAAGGAGATGCTGAACTGACCCTGAAGCAGCGCAGAGAAGAGCTACTGCATCAGTACAGGAGCAGGCCTCTGGTGTTCCTGGAGAGGTACCATgcctaCCTCAAACCCCAGAACCTGTCCGCGTTTGCCCACGTCAGCTCAGATCCACGGGCTCTTCACTACAGCAATGTGATAGAGAAACGATCTGCTGCATCAACCAACAGAACAAGGGTTCGCAACCAGCGCTACGCTGCCCTCAGGGCTCTCCAGAGGGAGGGCGAGTATTTCAACGATGAGCAGATGCGGATGAGGGAGCCGCTGCTGTATGAACAATATATTGGCCAGTACCTGACTGATGAGGAGgtgCTGGAGCGCTCCCAGGAGGCCATGCTGGACGATGCACAGCGGGGACCAGGGGCACCAGCAGGAAGCACAGGAGGGCTCGCCCACCTCCTCCTCAACTCCTACCAGGAGCGTCTCATCCAGAGTCGCCTGCAGGAggaacaggagagagaggagggagcaCAGGAGGAAGACGAGGATGAAGACAATGATATTACCGTCCAGCAGAAGGAATGGGAGCCCACGCCAGAGGAGAAGGCTCTGCTCAGGGAGGAGTTCATCAGTCAGATGCACCAGCGCTTCCTAGATGGCAAAGACAAGGATTTCAACTACAGTGAGGTGGACGAGAACCCGGACTACGACAACTTGGACATAGTCAGCAGAGATGCGGAGGATAAATACtttgatgaagatgatgatgaggaggaggaggaagacgagGTGGaaaatgatgaagaggaagaaaatATGACAGAATAGTGGCTGTATTATTAGAACTGTAGTAACAACTGTCACACTCACTGCTTTGATTGAACTGTAAATACAAATGTACAAAATAAGGatatgtatttcattttttaacgTGAATgcaaacatactgtagcttgtAATAAGTAATGTTTTTGAGTCTTTGCAAATATAGATATAATGCCCTTCTGACAAAAGGACTAAAGACCGGATGACTGATTGCAGTTTTCTTTTCACCTTGTTTACGTCCTGCACAAATACAATCTACAAATGTCAACATAAGCCAAACGAAGAACAAGGATAAAATCACCTTACAGGAAGAAAATAAAGTTTTGGCTGAAATACACATTCAAAAATTAGACGCAATTAATAAACATTTAGCAAAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206578 lncRNA downstream 6213 6338673 ~ 6339107 (-) True G152473
TU206554 lncRNA downstream 31921 6312812 ~ 6313399 (-) True G152462
TU206520 lncRNA downstream 117206 6226638 ~ 6228114 (-) False G152441
TU206523 lncRNA downstream 136308 6182408 ~ 6209012 (-) False G152441
TU206490 lncRNA downstream 190220 6154874 ~ 6155100 (-) True G152422
TU206601 lncRNA upstream 8805 6359069 ~ 6359288 (-) True G152492
TU206603 lncRNA upstream 27695 6377959 ~ 6378253 (-) True G152494
TU206604 lncRNA upstream 30611 6380875 ~ 6381191 (-) True G152495
TU206606 lncRNA upstream 36901 6387165 ~ 6391598 (-) True G152497
TU206660 lncRNA upstream 77064 6427328 ~ 6428236 (-) True G152548
XM_039823846.1 mRNA downstream 100901 6229363 ~ 6244419 (-) True baiap2l2a
XM_039823671.1 mRNA downstream 176296 6155299 ~ 6169024 (-) True csf2rb
XM_039823670.1 mRNA downstream 176302 6155299 ~ 6169018 (-) False csf2rb
XM_039823673.1 mRNA downstream 176302 6155299 ~ 6169018 (-) False csf2rb
XM_039823669.1 mRNA downstream 176302 6155299 ~ 6169018 (-) False csf2rb
XM_039825759.1 mRNA upstream 225880 6576144 ~ 6585025 (-) True desi1a
XM_039824026.1 mRNA upstream 257020 6607284 ~ 6649259 (-) True llgl1
XM_039824028.1 mRNA upstream 300565 6650829 ~ 6698387 (-) True myo15aa
XM_039825833.1 mRNA upstream 361360 6711624 ~ 6718897 (-) True drg2
XM_039825832.1 mRNA upstream 361360 6711624 ~ 6718893 (-) False drg2
TU206522 other downstream 117206 6182408 ~ 6228114 (-) True G152441
TU206279 other downstream 731652 5574680 ~ 5613668 (-) False atp5mf
TU206278 other downstream 731652 5610556 ~ 5613668 (-) False atp5mf
TU206260 other downstream 762459 5580368 ~ 5582861 (-) False bud31
TU206270 other downstream 791070 5549318 ~ 5554250 (-) False top3a
TU206683 other upstream 369520 6719784 ~ 6720643 (-) True G152567
XR_005641918.1 other upstream 1731874 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 2090915 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 2381133 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 2462078 8812342 ~ 8816276 (-) False natd1

Expression Profile