RNA id: XM_039824616.1


Basic Information

Item Value
RNA id XM_039824616.1
length 3875
RNA type mRNA
GC content 0.52
exon number 24
gene id clec16a
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 7214348 ~ 7270791 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATCGCCGCCTATCACCTTCTGTTTGCTAAGTAGCTATCTGTACGGGAAAGTGGGTGTAATGGATTGATTTGCGGACACTTACGTTAGCGAAATAACGCGCCTGTCAAAACATCACACCCTTTAAAACCACAACCATGTTTGGCCGGTCTAGGAGCTGGGTTGGAGGACAGGGGAAAGCGAAAAACATCCACTCCCTGGATCATTTGAAGTATATGTACCATGTCCTGACCAAAAACACCACAGTGACAGACCACAACCGAAATCTTCTAGTGGAGACCATCCGCTCCATTACAGAGATCCTCATCTGGGGGGACCAGAATGACAGCTCTGTATTTGActtcTTCCtggagaaaaacatgtttgcaTTCTTCCTGAACATCCTGCGTCAGAAGTCGGGACGCTACGTGTGTGTCCAACTCCTTCAGACCCTCAACATACTGTTTGAAAACATTAGCCATGAGACTTCCCTATATTACCTCCTGTCGAACAACCACGTGAACTCCATCATCGTCCACAAGTTTGACTTCTCGGACGAGGAGATCATGGCCTACTATATCTCCTTCCTCAAGACCCTGTCACTCAAACTCAACAACCACACCGTGCACTTCTTTTATAATGAGCACACTAATGACTTTGCCCTGTACACCGAGGCCATTAAGTTTTTCAACCATCCTGAAAGCATGGTCCGCATCGCAGTCCGGACCATCACGCTCAACGTCTACAAAGTTTCATTGGACAACCAGCACATGCTGCACTACATACGAGATAAGACAGCGGTGCCATATTTCAGCAACTtggtctggtttattggcagcCATGTCATCGAACTGGACAAGTGTGTGCAGACAGATGAAGAGCATAGGAACAGAGGGAAGTTAAGTGACCTCGTAGCAGAGCACCTTGACCACCTGCACTACCTGAACGATATCCTCATCATCAACTGTGAATTCCTTAATGACGTTTTGACCGACCACCTCCTCAACCGTCTGTTCCTGCCCCTCTATGTCTACTCTTTGGTTATCCCTGAGACGTCTGAAGAGCGAAAGATTAACCCTCAGGTGTCCCTCTACCTGCTGTCTCAAGTGTTTCTGATCATTCACTATCAGCCAATGGTCAACGCACTGGCCGAAGTTATTCTCAACGGAGATCTGTCTGTCTTCACCCCGCAGACAGatatacacagcacacacaagaaCACGGCCAGTGCAGGAGGTGTGCGCTGCTTCACCAAGCCCCTGGAGTCTCTGGAGCGCTCCCTGGAGCTGTCCCGCCACCGTGGCCGCAAGAGAACTCAGAAGAGGCCTAATTACAAGAACCTAGGCGAGGAGGAGGATGACGAAAGAGCtcggggagggggaggaggcagCGGAGGAGGAGTAGAGGAGGGCTGGGACGACGaaagcagaggaggagagagggagggaggtcgagagagggagaaaggaaaagAGATAGAGATGGTGGTGATGGACAAGTGTAAGGTGTCAGAGCTGACGGAGCAGAACATCACTGATGAAGAGAAGACCGCTGCAGCcacccgcacacacacgcagaggagcagaCCATTCTTAGACATGGTGTACAGTGCTCTCGACTGCACCAATGATGACTACCATGCCCTATTTGTCCTCTGCCTGCTGTATGCTGTCTCACACAGCAAAGGTATTAACCGAGATCTTCTGGAGCGTCTGCAGTTGCCAGTTCCTGACCAGGAGAAGAGCTCTTACAGCCTGGTGCTGGTAGAGAGACTGATCAGAGTTATGAGCCAGGCATCACAGCCAGatggtAAAGTGCGTCTAGCTACCCTGGAGCTTAGCTGCCTTTTACTGAAGCAGTCTGTGCTTTCTGGAAACCACTGTATAATCAAAGATGTACATCTGGCCTGCCTGGAgGGTGGTAGAGAAGAAAGTCTGCATTTACTGCGGCGATTCTACAAGGGCGAGGAGATCTTTCTGGACATGTTTGAAGATGAATACAGGAGCATGACGATGAAACCCCTGAATGTGGAGTATCTAATGATGGATGCCTCCGTGCTGCTGCCACCCACCGGCACCCCTCTGACTGGCATCGACTTTGTCAAGAGACTGCCCTGTGGAGACGTGGAGAAGACACGCAGGGCAATCCGTGTGTTCTTCATGCTGAGGTCCTTATCGCTTCAGCTTCAGGGAGAACCTGAGACGCAGCTGCCTCTGACCAGACCTGAAGACCTTATCAAGACTGATGACGTCTTAGACCTcaATAACAGTGACCTAATTGCCTGTATGGTGGTCAGTAAAGATGGCGGCCAGGCCCAGAGGTTCCTCGCTGTAGATGTGTACCAGATGAGTCTGGTCGAACCAGAAACCAAACGCCTTGGATGGGGTGTAGTCAAGTTTGCCGGCCTTCTGCAAGACATGCAGGTGTCTGGCGTTGAGGATGACAGCAGAGCACTGAACATCGTCATCCATAAGCCCAGCTCCAACCCCCACGCCAAGCCCCTGCCCATCCTGCAGGCCAACTTCATCTTTGCCGACCACATCCGCTGTATCATCGCCAAGCAGAGGTTGGCCAAGGGTCGCATCCAGGCCCGACGAATGAAGATGCAGAGGATTGCAGCTCTGTTGGACCTGCCTGTGCAGCCCAGTGCGACGGAGGTGTTGGGTTTCGGTCAGACAGCAAACGCTTCACCCAGCGGCCTGCCTTTCCGGTTCTACGAGCAGTCAAGACGGGGGCCCAACGACCCCACGGCAAATAGAGCAGTTTTTGCCTCTGTCGATAAAGTACCAGGTTTTGCAGTGGCTCACTGTGTGTCGCAGCACAGTCCCTcgcccctctcctccccctcgcCTCCCTCCAGTGGGAGTGGGAGCACAGGAAGATGTGACTCTGTTACTGCGAGCACTATATCAGCTCAGAGCCCCACAGATGACGGTACGTTTTTGGACCACACCCCAGCCTCCTCCTCTGGCGGAGAAGGGGAAGGAGTAGGTGGAGAAGTACTGTTTGTCGCCTCTACTCCCCCGCCCCCAGTCACGGCTCCGGCCCTGGCCCCCAGCCTCACCCCGGCGTCCCAGCCCAACATCTCCCTCCTCACAGACAACAACGCAGAGACACTCAGCGTGGAGTCGCTCACGCTGCTGCCCCCAGCAGGCTCACCACACCTGCACCCCTGTGCCAGCCACATTCCCGCTGCGCACTCCCTCCAGAGACCAGACGCCTCCAtcgcagaggaggaggaggaagagggggatAGGAAAGAAGAGCAAAGAGATGAGGAGCAGCAAGAGGAAGAGGGCTCGCCGATGGATGACACGGAGACGGATGCGACGGTAAAAGAGGAAACCACGACAACCGAGTTGGTCACCCCCACTGACGAGGAACCAGAGGGAGTAGATAAGCCAGAAGGTGAAGACACACCTCTAGAGGTGAATATAGACCAACTCTCTGCTGCAGAGCTGCAAGAAAGAGACGACTCAGAGTATGTAGAGAACACAGAAGATACAGAGGTGCACGCTGACACACAAGACTCGCCTGAACTGGATTAAGCAACACACACTCAGTCATCTTCATGCATTTAAACTTGTCTCTAAGAGGACAGTGAAGTGTGATAGTGAATCTATCCAGCTTGACTGCAGTATATTTTTGTGTTGAGACCTGTAGATTAGGATAGGATTTTGGAGGCATCtcaaaatttgtgtttttttctccgaGAGAACGGAGGACGAGACACTGGTCGAACTCGAGGAAGGCTTGAAGCACATTTGGGTTTCTGTGCACTTGAGTTTATTATCCGGTTGTGTTTTAAGCAAGCGTGTGTAAAGGCGCGCAACCAGCAACATTTTGTACTCCTTCTGATCGATTGTTTGTTCAGCtcaaagaaacacacataacGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206880 lncRNA downstream 8254 7204314 ~ 7206094 (-) True G152729
TU206881 lncRNA downstream 13436 7200687 ~ 7200912 (-) True G152730
TU206859 lncRNA downstream 175789 7021469 ~ 7038559 (-) True G152712
TU206870 lncRNA downstream 200663 7013247 ~ 7013685 (-) True G152720
TU206823 lncRNA downstream 440635 6772880 ~ 6773713 (-) False arhgdig
TU206894 lncRNA upstream 60019 7330810 ~ 7356838 (-) True G152738
TU206905 lncRNA upstream 97003 7367794 ~ 7369853 (-) True G152748
TU206913 lncRNA upstream 207528 7478319 ~ 7478614 (-) True G152756
TU207003 lncRNA upstream 298927 7569718 ~ 7624994 (-) False grin2aa
TU207007 lncRNA upstream 299852 7570643 ~ 7625078 (-) False grin2aa
XM_039824382.1 mRNA downstream 42908 7062856 ~ 7171440 (-) False LOC120574177
XM_039824381.1 mRNA downstream 42908 7076210 ~ 7171440 (-) True LOC120574177
XM_039825564.1 mRNA downstream 159799 7022710 ~ 7054549 (-) True cacng3b
XM_039825197.1 mRNA downstream 208646 6980322 ~ 7005702 (-) False LOC120574761
XM_039824625.1 mRNA upstream 7075 7277866 ~ 7302434 (-) True ciita
XM_039824626.1 mRNA upstream 7075 7277866 ~ 7297813 (-) False ciita
XM_039824628.1 mRNA upstream 34843 7305634 ~ 7322088 (-) False nubp1
XM_039824627.1 mRNA upstream 34843 7305634 ~ 7322085 (-) True nubp1
XM_039824234.1 mRNA upstream 299035 7569826 ~ 7723914 (-) True grin2aa
TU206683 other downstream 493705 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 986234 6182408 ~ 6228114 (-) True G152441
TU206279 other downstream 1600680 5574680 ~ 5613668 (-) False atp5mf
XR_005641918.1 other upstream 811347 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 1170388 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 1460606 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 1541551 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 1582969 8853760 ~ 8856957 (-) True tufm

Expression Profile