RNA id: XM_039824627.1


Basic Information

Item Value
RNA id XM_039824627.1
length 2526
RNA type mRNA
GC content 0.44
exon number 10
gene id nubp1
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 7305634 ~ 7322088 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAtaacgttgttttttttcttcatttaggGGATCGAAACTTCATGTAGTGCGCTTCCGGAACCTTCGAAGGGGGAAGACTTTAACGGGAGGACACAACACTCGTGCAAAGATGTCAAACGTACCAGATAATGCAAATGAGcACTGCCCGGGTACAGAAAGTGATCAAGCAGGGAAGACTTCGTCATGTCAGGGCTGTCCCAACCAGAAAATATGCGCTTCTGGAGCCACCAAGGCCCCCGATCCTGCCATAGCCGAGATAGGAGTGAAGCTGTCAACAGTCAAACACAAGATCCTCGTGCTGTCTGGGAAAGGAGGAGTAGGGAAGAGTACCTTCAGCGCTCACCTGGCTCACGCCCTGGCAAGTGACAGCACGAAGGAGGTTGCCCTGCTGGATGTAGATATCTGTGGTCCATCCATTCCTAGGATCATGGGCTTAGAGGGAGAACAGGTTCACCAGAGTGGCTCAGGCTGGTCTCCTGTGTATGTGGATGACAACCTGGCAGTCATGTCTATTGGCTTCCTGCTCAGTAGCCCTGATGATGCTGTCATCTGGAGAGGACCCAAGAAGAATgGGATGATCAAGCAGTTTTTGAGGGATGTTGACTGGGGGGAACTGGATTACCTCATCGTGGACACGCCCCCTGGCACGTCTGACGAACACCTGTCAATCGTCCAGTACCTAAGCTCCACCCACGTTGATGGAGCTGTCATCATCACCACACCACAGGAGGTATCGTTGCAGGATGTGCGAAAGGAGATCCGGTTCTGTCAGAAGGTCAAGCTGCCGATCATCGGAGTGGTGGAGAACATGAGTGGCTTCGTTTGTCCTTCATGCAAGAACACATCACAGATCTTCCCTCCCACCACTGGTGGCGCAGAGCGGATGTGTGCAGATCTAGATCTACCCCTGCTAGGAAAGGTACCTTTAGACCCGAGGATAGCGCGAAGCTGCGACGAGGGCAAGTCTTTCCTCAGTGAAGTACCTGACTCTCCTGCTGCTAAGGTCTACCTGAATATTGTGCAGAGTATTAAGGACTACTGTTCCAACCGTGTGACAGAGGAGCAGAGGTCTGCCTGAACTCCCGATGAGGACGGACATATCGGACCAGAACACTGAAGAGAGATCACAGGTTGAGAGTGTGGTAGACCTGATTAACTACTGAATTAGAATCCCACACACATAGGAAGGATAATACCATTAATAATGCAACACTCACCAAAGCCTGACAGAATTATTTCCGCATGATTATCAGTCCtaaaaagaccaaaacgacAATGTGTTTCTCAGTACTGTCAGCAATACACAGCCTCTATGTGGCTCTTAACGACAAGCCTATCGGTTCATGCTGAAGATATACGTATGCTTAAACCTacaacagctgggcactgtagtttgtactaaatgttactcaaacaggagtaaacgGTGCATTtattggggactattttcagctgtggattaatacacatttggtgttTGAGTGAGTGTTTCTAGCAGCAGGATGGGATTGTACTCTGGAGagactcaaaataaactgcaGGGCCCTGTTCATCATGACAAAGGAAGGTGTTTTTCAGTGCGGCAGTGGCTCGATGATTctacagcaacaaaaaaaaacagaggaagtTTTAAGAGGCTTTGTATTCAAAGGCAATACTTCATGAAtcagtttattgttgtttttggtcCATACATGGAAATAGACAACAAGAAAATATGTAGAATATGACCAGACttatccattcattttgaagttATAGGTGGGGATCTGAGCAGTGCCAGAGACTCGGTCTGGTAGGGCCCCACATATCATGATGACATGTAGTTTATTGTCTCTTTGTCCCGGAATCCGACTGCTGTGGATGCTGAATATTTACAGTTCCTAGATAGATGAACATAGGTATAGACTCTCCCTGTTGTGCTGTAGTAAAGGACATGCTGTTTAAAGCTCTGATCATGTTGTAAATCAAGCAGCAGTGtcaaacatttgaaaaatatcCTGCAAGGACATTCGGCAACCCTAAATCGTATTTGTGGATCCCCCGGTCCTCACTGTCCATGGTGACAGTGAATCAAATGCTGGTACCATCAGTGGGATTTAAACCCTAGTTGATCACATCCTCTAAATACAGAGCACAGCATCATTAGCATAGTATCAAATCTCAACTTCTCGTTTGATTTAGGTTTCTCAGTGACTGTAACCATTCCACATGTGAAATGAGTCTGTATAGAGATGTTAACATTTCAAGCCGTATAGATTATTTGCTTTGTTTTCAGCAGGTCttgtgaatataaaaaaaatttgaatgtATAAATTTGGGAGATCTACATAATTTACTTTCTGTCTAagatgtgtgggtgtgttacATACGTAAAAGCTCAGTTGTCCCTGATATacaattaagatttttttaatgAGATTATTAGTTTCTTATAAAGCATTGGTTTAAACACATTGTTTTGTGTAATGCAATTGCTTTAACTGACTTATATAATAAATGACCAAACATGGAATCACCATAAA

Function

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206880 lncRNA downstream 99540 7204314 ~ 7206094 (-) True G152729
TU206881 lncRNA downstream 104722 7200687 ~ 7200912 (-) True G152730
TU206859 lncRNA downstream 267075 7021469 ~ 7038559 (-) True G152712
TU206870 lncRNA downstream 291949 7013247 ~ 7013685 (-) True G152720
TU206823 lncRNA downstream 531921 6772880 ~ 6773713 (-) False arhgdig
TU206894 lncRNA upstream 8725 7330810 ~ 7356838 (-) True G152738
TU206905 lncRNA upstream 45709 7367794 ~ 7369853 (-) True G152748
TU206913 lncRNA upstream 156234 7478319 ~ 7478614 (-) True G152756
TU207003 lncRNA upstream 247633 7569718 ~ 7624994 (-) False grin2aa
TU207007 lncRNA upstream 248558 7570643 ~ 7625078 (-) False grin2aa
XM_039824625.1 mRNA downstream 3200 7277866 ~ 7302434 (-) True ciita
XM_039824626.1 mRNA downstream 7821 7277866 ~ 7297813 (-) False ciita
XM_039824615.1 mRNA downstream 34843 7214348 ~ 7270791 (-) True clec16a
XM_039824234.1 mRNA upstream 247741 7569826 ~ 7723914 (-) True grin2aa
XM_039824204.1 mRNA upstream 417494 7739579 ~ 7868877 (-) True LOC120574112
XM_039824205.1 mRNA upstream 417494 7739579 ~ 7868876 (-) False LOC120574112
XM_039824208.1 mRNA upstream 423666 7745751 ~ 7868881 (-) False LOC120574112
XM_039824206.1 mRNA upstream 423689 7745774 ~ 7868882 (-) False LOC120574112
TU206683 other downstream 584991 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 1077520 6182408 ~ 6228114 (-) True G152441
TU206279 other downstream 1691966 5574680 ~ 5613668 (-) False atp5mf
XR_005641918.1 other upstream 760053 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 1119094 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 1409312 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 1490257 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 1531675 8853760 ~ 8856957 (-) True tufm

Expression Profile