RNA id: XM_039824655.1


Basic Information

Item Value
RNA id XM_039824655.1
length 1108
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC120574368
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9391565 ~ 9406804 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCATCAGATCACCTTCAATAGCAACCATGTTCTCtgtagctctgctgctgctgctggctgctggatCCTGTGTGAACAGTATTGATCTCATCCAGACAGACTCAATGGTTGTGCAGCCTGGACAGTCTCTGACCATCAGCTGTCAGGTCTCTGGTTATTCTTTGACTGATAACAGCTATGCAACAAGTTGGATCAGACAGAGTGAAGGAAAACCAATGGACTGGATTTCCCATCAGTGGGGTGGAGGAGACTTTTACCAAAATAATGctctgaagaacaagttcagcTACAGCAGAGACACTTCTGCTCTAACAGTGACTCTAAAAGGACAGAATGTGCAGCCTGAGGACAcagctgtgtattactgtgtacGTTACCCCACAGTGATACAAACCACCAACAGACCTGCACAAATACCCAGAGTTTGGAGTGAGATCAAACTGGACCAGTCTCCCTCTGAGGTGAAAAGACCTGGAGAGACAGTGAAGATGTCATGTATCATATCTGGTTATAGCATGACAAGCTACTATATTCACTGGATAAGACAGAGACCAGGAGAAGCTCTGGAGTGGATTGGGAGGATGAACACAGGTTCAAACTCTGCTAGCTATGGCAGCTCCTTTCAAAGCCGTTTCATCATGACTGAAGATGTTCCCAGCAGCACTCAGTACCTCGAGGTCCAGagcctgacagcagcagattctgctgtttacttCTGTGCTCGAAGAGACACAGTGACTGAAGACAGTGGAGCAGCTGCACAAAAAACCTCCACAGACAACAAACAGCAATgtgttgatggtcagactctgacagaatctgaaTCAGCAgttaaaagacctggagaatctcacagattgacctgtacaacatctggattCACATTCAGCAGCTACGCTATGAGCTGGgtcagacaggctcctggaaaaggactggagtggatcGCATATATAGACACATCTAGTACTCCTATCTCTTACTCCCAGTCAGTCCAGGGGAGATTCACCATCTCCAGAGATGACTCCAGCAGTAAACtctatctgcagatgaacagtctgaagaccgAGGACACGGCAGTGTATTACTGTGCACGAGAGACACAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207976 lncRNA downstream 31715 9359528 ~ 9359850 (-) True G153527
TU207935 lncRNA downstream 53699 9246355 ~ 9337866 (-) False LOC120574352
TU207951 lncRNA downstream 88218 9248397 ~ 9303347 (-) True G153508
TU207940 lncRNA downstream 118451 9249829 ~ 9273114 (-) False LOC120574652
TU207952 lncRNA downstream 126198 9258210 ~ 9265367 (-) True G153509
TU207998 lncRNA upstream 135314 9542118 ~ 9548305 (-) True G153539
TU207921 lncRNA upstream 196053 9602857 ~ 9603106 (-) True G153481
TU208072 lncRNA upstream 345455 9752259 ~ 9798267 (-) True G153588
TU208076 lncRNA upstream 372485 9779289 ~ 9782563 (-) True G153591
TU208095 lncRNA upstream 387288 9794092 ~ 9842982 (-) True G153597
XM_039824654.1 mRNA downstream 46393 9343701 ~ 9345172 (-) True LOC120574364
XM_039825003.1 mRNA downstream 343442 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 354737 9020086 ~ 9036828 (-) False sez6l2
XM_039825615.1 mRNA downstream 354980 9020086 ~ 9036585 (-) True sez6l2
XM_039825761.1 mRNA downstream 372825 9011223 ~ 9018740 (-) True kctd13
XM_039825001.1 mRNA upstream 290839 9697643 ~ 9739305 (-) True LOC120574579
XM_039824129.1 mRNA upstream 654482 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 654482 10061286 ~ 10149481 (-) False cacna1aa
XM_039824122.1 mRNA upstream 654482 10061286 ~ 10149481 (-) False cacna1aa
XM_039824120.1 mRNA upstream 654482 10061286 ~ 10149481 (-) False cacna1aa
unassigned_transcript_762 other downstream 2560 9387327 ~ 9389005 (-) True LOC120574367
unassigned_transcript_761 other downstream 14528 9376433 ~ 9377037 (-) True LOC120574366
unassigned_transcript_760 other downstream 22416 9368657 ~ 9369149 (-) True LOC120574646
unassigned_transcript_759 other downstream 41792 9348069 ~ 9349773 (-) True LOC120574365
TU207965 other downstream 46350 9344716 ~ 9345215 (-) False LOC120574364
unassigned_transcript_763 other upstream 1050 9407854 ~ 9408482 (-) True LOC120574369
unassigned_transcript_764 other upstream 13348 9420152 ~ 9420698 (-) True LOC120574660
unassigned_transcript_765 other upstream 17705 9424509 ~ 9425046 (-) True LOC120574659
TU207913 other upstream 21379 9428183 ~ 9433001 (-) True G153473
unassigned_transcript_766 other upstream 28488 9435292 ~ 9436866 (-) True LOC120574373

Expression Profile