RNA id: XM_039824661.1


Basic Information

Item Value
RNA id XM_039824661.1
length 2979
RNA type mRNA
GC content 0.51
exon number 18
gene id trap1
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 13460903 ~ 13470236 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTCGCGGGTCCTGCCTGTGCTACGGTCGTACGGCGTGTGCGTCCTttacatactgtctatggtgtgTCCCTTCGGTCAGTCGACCCGTCTTGTCGTGTTATCCCTCGTTTGTTATTATGTCCCGCTGCCTCGCGCTGGCTCGGTTCGCCCTCGGTTCCTCTCAGAGGACCAACTCACGGCTAACGTCATGTGCACGAGGGCTGAGCAGCCGAATTACCTCGCGCTCCTTCACCAGAGACCTGCAGGTTGGGCAGCAGCAGAGGTGGAGCAGTCGGCCCAAAGTGTGGAGCTCCCAGCGGTCCTGTCTCGGCTTCAGCCAGCAGTCTTACTACAGCACCCAGGAGGCAGAGAAAGAGCCTGAAGAGGAGCCTCTGCACACCATCATCAGTGATACGGAGTCTGTTCAAGGTAGCTTGTCCAAACATGAATTTCAGGCTGAGACGAAAAAACTTCTGGACATTGTTGCCAGGTCCTTGTATTCAGAGAAAGAGGTGTTTATCAGAGAGCTGATCTCCAACGGCAGTGACGCTCTGGAAAAACTGCGCCACAAACTGATGACAGCAGGTGGTGAAACGGCTCAGATGGAGATCCACCTGCAGACCGATGGTGCCAAGGGCACCTTCACCATTCAGGACACAGGAGTAGGGATGAACCAAGAGGAGCTGGTGGCCAACCTGGGGACTATCGCCCGCTCCGGTTCCAAGGCATTTTTGGACGCCCTGCAGAACCAGGCAGAGGCCAGCAGCACCATCATTGGTCAGTTTGGTGTGGGATTCTACTCTTCCTTCATGGTGGCTGACCGTGTTGACGTCTACTCGCGGTCCGCTGAGCCCAACGCACCCGGATACAAGTGGTCCTCAGACggCTCTGGAGTTTTTGAGATCGCTGAGGCCAGTGGTGTTCAACAGGGAACAAAGATCGTGCTGCACCTCAAAGACGACTGCAAGGAGTTTTCCGCTGAGGACAGAGTTAAAGATGTTGTAACTAAGTATAGCAACTTTGTCAGCTTCCCCATCTTCCTGAACGGACGGAGGCTCAACACACTGCAGGCTTTGTGGATGATGGAGCCTAAGGAAATTAGTGACTGGCAGCATGAGGAGTTCTACCGTTACGTCGCCCAAGCCTACGACAAGCCTCGCTACACGCTGCACTACCGTGCCGACGCCCCGCTCAACATCCGGAGCATCTTTTATGTCCCTGACACGAAGCCGAGCATGTTTGATGTGAGCAGGGAGATGGGCTCCAGTGTGGCTCTGTTCAGCAGGAAGGTCCTGATCCAGACCAAAGCGACTGACATCTTGCCCAAGTGGCTGCGCTTCCTCCGAGGTGTGGTGGACAGCGAGGACATCCCGCTGAATCTGAGCAGAGAGCTGTTGCAGGAGAGCGCCCTCATCAGGAAGCTCCGTGACGTGTTGCAGCAGAGGGTGATCCGCTTCCTGCTGGACCAGAGCAAGAAGGAGCCAGAGAAGTACAACAAGTTCTTTGAGGACTACGGCCTCTTCATGAGGGAGGGCATCGTCACCACTCAGGAACAAGACGTCAAGGAGGATATTGCAAAGCTGTTGAGGTTTGAGTCTTCTGCTCTGCCAGCGGGCCAGCACACCAATCTGATGGAGTACTCCTCCCGCATGAAGGCTGGCACACGCAACATCTACTACCTGTGCGCCCCCAACCGCCATCTTGCAGAGCACTCCCCCTACTATGAGGCCATGAAACAGAAAGACATGGAGGTGCTGTTCTGCTACGAGCAGTTTGATGAGCTGACCCTGCTCCACCTCAGGGAGTTcgacaaaaagaagatgatCTCAGTGGAGACTGACATCGTGGTAGATCACTACAAAGAGGAGAAGTTTGAAGACAGCAAGCCCGCCTCCGAGCGCCTGACGCAGGAGCAGGCCGATGACCTGATGTCCTGGATGAAGAATGCCTTGGGCCCCCGAGTCACCAACATAAAGCTGACTCCACGCCTGGACACCCACCCAGCTATGATCACAGTGCTGGAAATGGGTGCTGCACGCCACTTCCTCCGCACCCAGCAGCTGGCTCGCACCCCTGAGGAGAGGGCTCAGATACTGCAGCCCACACTGGAGATCAATGCAGgACATGATCTGATCAAGAAGTTGCAGGCACTGAAGGACACAAACTCTGAACTGGCTGGACTGCTACTGGAACAGATCTATGATAACGCCATGATCACGGCGGGCCTGAACGACGATCCCCGACCGATGATTTCCCGCCTTAACGACCTGCTGACTAAAGCTCTGGAGAAGCACTGAGAGCTGTTCAGACATGATCGGTGCAGACGGACTTGGTTTTGAGGACAGTGGACTGAAGCATTTACATAGAACTGCAGGCCTGGAACCATAAAatcacatcccccccccccccggagtACTTGTAAAGGCttttaaagctcagatggagTGACAATTGACTGCTGGAAGCTTTGTAAGCACTTGTATGTCTTCATGCTCTGTGTTCAGCACGGTTTCTTCAGGCTCGTCCACATCTTCAATAATATGGGTGCAAACAATGTAGAGATGAAGTGGGGAAAGCAGGCAAAAGTAAGAAGAGATGCATTAAAATGTTCTAACTGCCAAAAGAAGTTTTATTCTGAAGTGTGCATCAGAGATTTGAAGCGGTAAGAGATGGTTTAATTAGAAATGCAAGATGGTTATCACTGCTGAATAGAgctgttaatgttttttttttataaaccctTGTTCTTTTGCCCTCAAAATCCCTCaaattgttcattttttttcacattatttattttatgttttgcaaTTCATAAGAAGCTGAATACCACAAATGTGGGAATGTTTCAtgtgattaaatattttttaactgGGTCAAATGAAAAGAAACTGGTAGATGGTGTATGAGCTGCAAATATGACTTGTCATCGGTCAGTGGTCAAACATGGATTCTCAACAGGTATCATTAGTACTAATAAAATGGATTTAAAATACTG

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006457 protein folding biological_process
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09488 TRAP1, HSP75; TNF receptor-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209511 lncRNA downstream 206130 13254473 ~ 13254773 (-) True G154601
TU209510 lncRNA downstream 207697 13252924 ~ 13253206 (-) True G154600
TU209356 lncRNA downstream 507515 12947199 ~ 12953388 (-) True G154515
XR_005641887.1 lncRNA downstream 522239 12931733 ~ 12938664 (-) True LOC120574707
TU209363 lncRNA downstream 529584 12874360 ~ 12931319 (-) True G154517
TU209628 lncRNA upstream 119288 13589524 ~ 13631836 (-) False tfap4
TU209669 lncRNA upstream 185782 13656018 ~ 13692471 (-) True G154713
TU209678 lncRNA upstream 285428 13755664 ~ 13827791 (-) False G154717
TU209680 lncRNA upstream 285428 13755664 ~ 13827791 (-) False G154717
TU209682 lncRNA upstream 285428 13755664 ~ 13827791 (-) False G154717
XM_039824082.1 mRNA downstream 38952 13356226 ~ 13421951 (-) True prkar1b
XM_039824084.1 mRNA downstream 48850 13356226 ~ 13412053 (-) False prkar1b
XM_039824083.1 mRNA downstream 50759 13356226 ~ 13410144 (-) False prkar1b
XM_039824085.1 mRNA downstream 117288 13324235 ~ 13343615 (-) True pdgfab
XM_039824086.1 mRNA downstream 117289 13324235 ~ 13343614 (-) False pdgfab
XM_039824681.1 mRNA upstream 462 13470698 ~ 13531719 (-) True crebbpb
XM_039824660.1 mRNA upstream 62535 13532771 ~ 13567799 (-) True LOC120574398
XM_039826325.1 mRNA upstream 102419 13572655 ~ 13586754 (-) False srl
XM_039826324.1 mRNA upstream 102419 13572655 ~ 13586754 (-) True srl
XM_039825279.1 mRNA upstream 119247 13589483 ~ 13600054 (-) True tfap4
XR_005641817.1 other downstream 38952 13335449 ~ 13421951 (-) False prkar1b
TU209391 other downstream 481218 12973332 ~ 12979685 (-) False sun1
XR_005641885.1 other downstream 488093 12956522 ~ 12972810 (-) False iqck
unassigned_transcript_848 other downstream 617929 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641884.1 other downstream 895432 12427504 ~ 12565471 (-) False cep112
TU209766 other upstream 580502 14050738 ~ 14057312 (-) False med9
XR_005641939.1 other upstream 1064735 14534971 ~ 14543992 (-) False LOC120574989
TU210021 other upstream 1319820 14790056 ~ 14790778 (-) False LOC120574213
TU210042 other upstream 1325790 14796026 ~ 14828220 (-) False LOC120574214
TU210040 other upstream 1381703 14851939 ~ 14857557 (-) False LOC120575102

Expression Profile