RNA id: XM_039824745.1


Basic Information

Item Value
RNA id XM_039824745.1
length 5193
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC120574465
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14099455 ~ 14106823 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGAGCGCATCGGAGCTTTGTGCAgagaacgtttgtattttatttacttgtccgaccttttctgtcattttctcgTCGTGTGTGACGCAGACTAGATTATGGGATTATTTAAaggaaaaaatacaatgcaGAGAGGTTTCCTACTTCGATGCCAGTGAGAAAAACTCTAGGAATATTTGGAGATGAAGAAGATGAATCTGCCCTAAACACTGAAATTCTTTCATCCGCACAGAAGTGGCGCATCTTGTAGATAGTAAGATAAAATCCAGTTGCAGGTGAGATGCCATAATCCGACTATCATGGACTCGTGGATCTTCCCATCGTCCCCTCCGAACCTGTCGGAGCACCTCATGTATGACAGCTTCATGCAAAGCAATGAGTCCGACCTCCACGGGAACTACACAGACCACAGCTTCAACAAAACCAGCACGGTGGTCATCACCTGCTTGTACTTTCTGGTTTGCACTGTGGGGCTCTGCGGAAACTCCCTCGTCATCTACGTCATCCTGCGCTACGCCAAGATGAAGACAGTCACCAACATCTACATCCTCAACCTGGCAGTGGCCGACGTGCTCTTCATGCTGGGCCTGCCGTTCATTGCTATCCAGCTGGCGCTGGTCCACTGGCCGTTCGGCCCTGTGCTCTGCAGGGTGGTGATGACCGTCGACTCTCTAAACCAGTTCACATCTATCTTCTGCCTGATGGTCATGAGCATCGACCGCTACCTGGCTGTGGTGCATCCCATTAAATCCACAAAGTGGCGCAAGCCGCGCATGGCGAAGACTATTAACTTAGCAGTGTGGGGGGTGTCACTGATGGTTAATCTGCCCATCGTTATCTACAGCGGAGTAAGCACAAAGCACAACGGCTGCTTCTGCACCATCGTGTGGCCTGAGCCACAAGAGGCCTACTACACAGTGTTCATGTTCTACACCTTCATCCTGGGCTTCTTCCTGCCCCTTTTGGTCATCTGCCTTTGCTACTTGTTCATCATCTTTAAGGTGAAGTCCTCAGGCATCCGTGTGGGCTCCTCCAAGAGGAAGCGCTCAGAGAGAAGGGTGACTCGGATGGTGTCCATCGTGGTGGCAGTGTTCGTCTTCTGCTGGCTGCCTTTCTACGTCTTCAACGTCACCTCGGTGACAGGAACCATCAGCACCACTCCCATCCTGAGGAGCACCTTTGCTTTTGTGGTGGTTTTGGGATACGCCAACAGCTGCGCCAACCCCATCCTCTACGCCTTTCTGTCGGAGAACTTCAAGAAGAGTTTCCAGAATGTTCTGTGTCTTAAGAAGGTGGGTGGGCTGGATGAGGCTGATCGCAGCGACAGCCGGCAGGATAAGTCTCGCATGATAAATGACCCCACAGAGACCCAAAGTACTCTGCTGAATGGGGACCTGCAGACCAGCATCTGAGAGGAAGGTGATTGGACTTGcataaacacactcacacagactcaTACGTATGTGAAACCAGAAATGGGGACTCAAGTTTGAGACTCTGACCCGTGGCGCACTTAAGTGgcacacacagtgacttcagacttgacttgagactcatcttcaaaagacttcagactcggCTAGGACTCGAGATGCAGGATTCGTGAACAATCTTTATTTTAAGGAAACATCTGATGAGCTGAATGTCATTCCCCTCCCTGCGTAACATCCTATGTAATATGTAACGTATCTGCTGCGCGCGGCCACACATGAGAGGACAACAACAAACGTGGCGACTGCACTGGCAGCTGCTGTGCCATTCATCAGAAGCTTTGGTTTAAATCTTCAGACAACAAGGCCCAAACAAAAGAATCACTGAATACTAAATATTTGGTATCAAGATAAATCATTCTGGCTCAACCACATCTCATTTTATCAGGCACTTGAACACACACCCTGATAGCTTAGCAAACACGTTTAGCTCAGCATTGGCTATCTAACGGCTTCTTGCTTTAGCTATGACCTACGGAGATTAACTCTATCTATCCGTCGTTCACTAGATGGTATGAAAAGATGAATTagcgtttgtttgtttatttgccaAACTTTTTGTGGGGATTTAACATTACATAATCATTTACATCCTGCTGGCTGCCACCCTTTTAATTATTTACGGTTGATCATGTAACGTTACAGTTGTATTTAGTTAACTTTACACTGGGTTTGAGACTCTGGGGGATGTGTCCAGCCTCTCAAACCTGGACACATAGGCTGTCATTTGTAGACTGCTCTGTAAGTGAAAAATAGGTTAGTTATTCATTTTAGCAATATTTTCCTGATAACCTGAGTACCTCAATATTTggtctgtactgtactgtatgttcatgtTACAAGGGAAAATACAGTTATTAACTTGAAAGTAAAGCAttcctgttttttgttgttgtcatatTGCTATTGCCTTTTTACACTGATTATATAACAAACAACTAATCAAACTGATACTGCATGATAATAGATACATGAGTCATAATAACATTTTACATGGTTTGAATTCCTTATAGCCTATTTAGCTATGCAGTGTTCTGAGCAGCCTGGATGGAATGCAGCAGGTGATACAACACTCATTATAACCAcgagagacttgagacttgacttggactcgagttaaaagacttgagacttgacttggactcgagttaaaagacttgagacttgacttggactcagagacttgtgagcatctctgTCTGAAACAAATAACAGCTCTTATCAACATTTTTAAGATCACATCGAATAGGAAGAAGACATGATTAAATAATAAACATGTCACAGAGGAACATGTCTGTTGTTAAGGAGGACAAAAAACCATCAGAAGGTCCTACTGAACTGTTCCTCTATCTGCCTTTGACACATTGTCTTGGAAACAAATCCATTATAACATAATCAGTCCATACAACTGTATGCTCTATGCTTTGAATGAAAATGGAATCAGTTTGTTTGCTCTCAGTGTATTGAGGTAGAAGGAACACTAACGCCCATTTGTAAATGGTCCTCTGGAGACCCGGGGTTATATACATAGTTTACAGCAGAGGGCCTGTGCCTGCATTGTGTAAAAATAACTACATACCAGTGTGTTCCTATGCTGTAATACAAAATACTGTTGTTAAAACATGATAATTCCTCTATTTTGTTCCTGTCTTGTCTGcaagttattttttctttttgactgTAAATAACTGTACAGGAAATGGGCAAAGAGACTATATGAAACGTCAGAGGATTTTATATTCAGTGTCATTTAGTTTTGAAACTCTAAATCTAACTTGTGAATAACGAATGAATGTCAGTGCCATTGATTCTTGTGTTTTGTAGTACAATGGTCACATGATTTAATGTGTGAccaattttacttgtgaagaaaTGTAtcaaatgtaaatgtgaatAACAGTGTTCAGTTGGCAGGCAAATATTTCGTCCTGTGTCGCTCGCTGTGTCAATATAGCTACATGCATAATTGATATTACATTAATGGTACTGGCTCGATATACCAAGCCAGCCTCTAACCAAAGTGCTGCTAAGATGTATAGAAACTCTATTACGATGTTGTATAGTATTATATCAAGTAATGTCATTGTATGCCTGTTGCTACTGGCCTTCTGTTGGAAACTGTTCTTTATCATGGCTTATTTACCATTATTTATGTGTATCATGTAATAATGCTGCTGCCATTGTTTGCAGCTATTACAGTAATGgcatttatcaaaaatgtcagACTGCATGATTCTAAATTATTCAGTATGAATGCCTAGTCGTGGCTCAGCTTTGACTTTTTGTCATCTGAGAGCATAAAATCTGTTTAGATTGTATTTTGTAAAGGAATATTTTAATACCAAGAAACAGATGGGTAACTATCTTGGAAGTAGTAAACTGGGATTTAAGATGGATTTAAAcatatttcatttaaaacacgtACCGTTTAttgttgtttcactgttttgtaTTACAGAAAACGTTGTTTGATGATGTGCTATTGGTAATTCCTCTGTTTCTCTATATTACTTTGCAGATATGAGGGGCTTAGTTTATCCCGTGCTGCCCCCCATTGCAAACTATTTGTAAATACTTTGTATAATGAAACTGGACCATCTTCGATTtctgtctccatgtgtctcaGTGACGTGAATTTGTGAAGGGCTAGAACACTTATCCTCAAGAGGCTTTGGTGTTCCTTTATAATAATCATCATTGTGCTCCACAGTTCATCCTGCCATCCTGTGACTCGCTGTTTGTTGCTGTAATCAGATAACTATCTATATAAATTGTTAAACCTTTACCCTACCCAGCGACAGATTATGATTAATGTGCAAAGAATGTGTGTTGCATTGATCTCAACATACAAGCCAGCCATTCTATAGCAAAAATGTGTATTATAtagtattatactgtatatacaaataACACATACAAACCACTGAGCATTCTTCAGTTttccatgacacacacacacacacacacacacacacacacaatttgtgAACCACCAGCCATGACTAATAAAATTCCATATCCAATCTCCCTCTCTGCAGTATTGCGAAACTTGTTACCTGGTCTGTAACATCTTATTACCATTGAAAGACATGACACACCTCTAGTGTCTTATATTTCCATAGCAACAGTGACTAAGAGTGTTGGTCCCATGGTTACACAAATTAGCATAATAATAGAGAGATGAATCCGGACATGAATTATCAATGTAGACATTGCTAAGAtgactgaagaaaaaaatagaaggCTGCATTAAGGCTGCAAAACCAAACACCTCAGTTACATTAAACCTGATGAAAGTGTATAGTTTGTGTGCACCACAAAATGTAAAACCAAACATCTTGTGTTGTCAAAATCATCCAGCTGTTGTAGTTATAATTATGATTCCggcaaagatttttttttttttttaaatacctgcATTTCTTAAGTCTATATTGCAGATTTTCCACTTAGTATTTGCTCCATCGGTGTttattatttagatttttatgaGGAGCCTTATTTGAATTGCTCAAATGCTGTATCTCATAAGCTTTGGGAAATCTTACAATTGCTCAAAAGTTTAGCAGTTTCTGTAGAAAGTTGGCATTATGGATGTTTTTCCTGTTTCTGCTTTGTTCAATTATAATGAAACAGCAAGTTTAATGGAGCAAACATGGATTGTGTAAAGCTATGTCGAAACTCAATAAAGTAATAAGTGACA

Function

GO: NA

KEGG:

id description
K04218 SSTR2; somatostatin receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209781 lncRNA downstream 174 14078514 ~ 14099281 (-) True G154788
TU209785 lncRNA downstream 11689 14085742 ~ 14087766 (-) True G154791
TU209765 lncRNA downstream 42143 14056467 ~ 14057312 (-) False med9
XR_005641993.1 lncRNA downstream 153058 13936768 ~ 13946397 (-) True LOC120575453
TU209682 lncRNA downstream 271664 13755664 ~ 13827791 (-) False G154717
TU209820 lncRNA upstream 219150 14325973 ~ 14326936 (-) True G154825
XR_005641944.1 lncRNA upstream 224122 14330945 ~ 14337074 (-) True LOC120575037
TU209899 lncRNA upstream 348239 14455062 ~ 14457036 (-) False LOC120574967
TU209938 lncRNA upstream 419311 14526134 ~ 14529119 (-) False cenpx
TU209980 lncRNA upstream 520927 14627750 ~ 14664671 (-) False G154948
XM_039823816.1 mRNA downstream 42101 14056414 ~ 14057354 (-) True med9
XM_039826248.1 mRNA downstream 148699 13884337 ~ 13950756 (-) True LOC120575451
XM_039826242.1 mRNA downstream 235921 13860150 ~ 13863534 (-) False LOC120575446
XM_039826241.1 mRNA downstream 235922 13860150 ~ 13863533 (-) True LOC120575446
XM_039823949.1 mRNA downstream 334949 13757750 ~ 13764506 (-) True hmox2b
XM_039825773.1 mRNA upstream 178351 14285174 ~ 14288819 (-) True LOC120575134
XM_039824079.1 mRNA upstream 277279 14384102 ~ 14417141 (-) False rnf213a
XM_039824077.1 mRNA upstream 277279 14384102 ~ 14417141 (-) True rnf213a
XM_039824078.1 mRNA upstream 278003 14384826 ~ 14417141 (-) False rnf213a
XM_039826106.1 mRNA upstream 312539 14419362 ~ 14425309 (-) False LOC120575368
TU209766 other downstream 42143 14050738 ~ 14057312 (-) False med9
XR_005641817.1 other downstream 677504 13335449 ~ 13421951 (-) False prkar1b
TU209391 other downstream 1119770 12973332 ~ 12979685 (-) False sun1
XR_005641885.1 other downstream 1126645 12956522 ~ 12972810 (-) False iqck
unassigned_transcript_848 other downstream 1256481 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641939.1 other upstream 428148 14534971 ~ 14543992 (-) False LOC120574989
TU210021 other upstream 683233 14790056 ~ 14790778 (-) False LOC120574213
TU210042 other upstream 689203 14796026 ~ 14828220 (-) False LOC120574214
TU210040 other upstream 745116 14851939 ~ 14857557 (-) False LOC120575102
TU210041 other upstream 745116 14851939 ~ 14857557 (-) True LOC120575102

Expression Profile