RNA id: XM_039824836.1


Basic Information

Item Value
RNA id XM_039824836.1
length 1732
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC120574497
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15662274 ~ 15664597 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTGCTGCGTGATTTGAGTTACTCCCACATAAGTCATGCACAGGAAAACCAAGAGCATTTGCTCCTTCATGTCAAGAACAATAGGCTGTTAGTGCGCTCTGAGGCTCTCAGGAGAAAAGTTTAACTCGGCACACGGAATTATTATTGTTGACAGAGGAATCATTAAGGACTTACACCGGAAGACTTATGCTGTTTTGAACTGTGGATTTGCTGTATTGTACATGACAAGCTGAAAATCATGTCACTCCCAGAGGAGGATCTCACATGCCCAATATGCTGTGACATCTTTACGGACCCTGTTTTGCTGTCatgtagccacagcttctgCAGGAGCTGTCTGAAGCGCTATTGGGAAACAGGGTTACGTGAGTGTCCAGTATGCAGAAAAAGAGCCTCCAAGGCTAGTCCTGCCACCAATTTGGCTCTGAGAAATGTCTGTGAAGCTCTTTTGACGACTAGGAGGAGTTCAGTGCTGGTGGAAGAGAAGATGAACTGTAATCTGCACGGGGAGAAGTTAAAACTCTTCTGTCTGGTTGACAAACAGCCCATCTGTGTGGTGTGCCAGTCTTCCAAACTGCACAAGAGTCACAACTGCTCACCTATAGAAGAGGCAGTACTAGACTGCAAGGATGAACTTGTTTTATCCCTCAAGAATTTGCAAGATAAAGCTGACAGCCTCAAAAGAATTCACATGACCTCTCCAGACATGATTGAGTACATCAAGAGTCAGTCACTAAAAACGCAAAGATTGATCAAGAGACAGTTCGAGCAGCTACATCAAGCCCTCTACCAAGATGAGCTGGCCAGAATAGCGGCtgtgaaaaaagaagaagaagacaagaTTGCAGAAATGAAGGATAAGATTAAAGAGCTTTCAGCAGAAGTGTTGTTGCTCACAGAGACAATCTCAGTCATACAAGAGCAGCTGAAAGAAGATGATATGGTCTTGTTGAAGAATTTCAAAGCCACTCAGGACAGagaaaaaaacataGCGCTTGATTCAGACAACATGTCCGGGTTATTGATTGATGTGACCAAGCATCTCTGCAACCTCAAGTATAAAGTCTTGGAGAAAATACTGGACCATATTGACTATACTCCTGTGACTTTGGACCCAAACACAGCACACCCCTGTCTCATCCTGTCTGACGACCTCACTTCCCTCCACTACTCAAAGACGCACAGAAGTTGCCCTGACAACCCAGAGCGCTTCCACATCAGCGCTGAAGTGGTAGGCATGGACGCACTGGGCACAGGAAGCCACCACTGGGTCGTGGAAACAGGAAGTAATCAGGACTGGCTCCTCGGCGTGGCCTCTTTGTCTGTACCTAGGAACTCTGAGATCTCCGCTCGGCCTGAGAACGGCTTCTGGACTTTATGTTTCAGGAACGGAGAGTTCAGGGCAATGACTTCACCACCCACCCCACTGACAGTTACAAGATTGCCCAAACAAGTCAAAGTAAAACTGGATTACAACAAAGGGACGATGTCTTTCTTTGACCCTGCTGATGACACACTCATTTATGTATTCACACACACGTTCACAGAAACTTTACTTCCATATTTTTATACACAGAGCAGTCATCCATTGAGAATAATGCCAGAGAAAGTACTTGTGACAATGCTGCGTCACGGATGAAGGATTTATTAATTTTGTAAGATAATATGATCCCAGACCTGTTTTGATGGATGAGAtcaatgtaaaataattaaatggGATTGGTGGATTGA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210397 lncRNA downstream 29438 15551004 ~ 15632836 (-) True G155239
TU210400 lncRNA downstream 107388 15554043 ~ 15554886 (-) True G155242
TU210389 lncRNA downstream 118257 15541557 ~ 15544017 (-) True G155234
TU210385 lncRNA downstream 134669 15526949 ~ 15527605 (-) True G155232
TU210269 lncRNA downstream 257705 15368229 ~ 15404569 (-) True G155151
TU210482 lncRNA upstream 17772 15682369 ~ 15691652 (-) True G155295
TU210486 lncRNA upstream 30176 15694773 ~ 15695558 (-) True G155298
TU210500 lncRNA upstream 64336 15728933 ~ 15774308 (-) True G155307
XR_005641874.1 lncRNA upstream 158394 15822991 ~ 15825654 (-) True LOC120574547
TU210521 lncRNA upstream 159296 15823893 ~ 15825649 (-) False LOC120574547
XM_039825320.1 mRNA downstream 16652 15605503 ~ 15645622 (-) False gcgra
XM_039825322.1 mRNA downstream 16652 15605503 ~ 15645622 (-) False gcgra
XM_039825321.1 mRNA downstream 42306 15605503 ~ 15619968 (-) True gcgra
XM_039825157.1 mRNA downstream 103537 15557080 ~ 15558737 (-) False zgc:103625
XM_039825156.1 mRNA downstream 103606 15557080 ~ 15558668 (-) True zgc:103625
XM_039824926.1 mRNA upstream 5568 15670165 ~ 15673455 (-) False crb3a
XM_039824925.1 mRNA upstream 5568 15670165 ~ 15673455 (-) True crb3a
XM_039824905.1 mRNA upstream 53250 15717847 ~ 15724422 (-) True tecra
XM_039824914.1 mRNA upstream 77166 15741763 ~ 15745572 (-) True LOC120574537
XM_039824851.1 mRNA upstream 82194 15746791 ~ 15788515 (-) False LOC120574502
unassigned_transcript_854 other downstream 98070 15564133 ~ 15564204 (-) True trnae-cuc_25
TU210305 other downstream 212771 15443164 ~ 15449503 (-) False metrnla
unassigned_transcript_853 other downstream 651934 15009798 ~ 15010340 (-) True LOC120573850
unassigned_transcript_852 other downstream 662130 14998773 ~ 15000144 (-) True LOC120574429
TU210041 other downstream 804717 14851939 ~ 14857557 (-) True LOC120575102
XR_005641871.1 other upstream 53250 15717847 ~ 15724422 (-) False tecra
TU210508 other upstream 79078 15743675 ~ 15744117 (-) False LOC120574537
TU210507 other upstream 82720 15747317 ~ 15749430 (-) False LOC120574502
TU210517 other upstream 148461 15813058 ~ 15815369 (-) True G155323
XR_005641873.1 other upstream 489190 16153787 ~ 16156067 (-) False LOC120574545

Expression Profile