RNA id: XM_039824839.1


Basic Information

Item Value
RNA id XM_039824839.1
length 6211
RNA type mRNA
GC content 0.49
exon number 41
gene id LOC120574499
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 16282880 ~ 16296424 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCAGTTGGTCAGACCATTCAGAGGGAAAAAATACCTACTGTACTGTGACAAATGTGAGTACAAGGTACTATCAATCAATGTCAATGTCAATGTCACAGGATTAGCACAAGACGAGAAGAATGCATGACCAAACTAAGGAAGGCACACCTACTGAGGAGACAGTCCTCCCTCTATAAAAGAGGCTGCTGAGGACTCTGTCAATAACTGGTAGGCTTCCTACTCAGGATAAAAAGAACAGACCTGACTCCATCTTCCGTTTGGACCAAAGGAGGCGCTTAAGGTGCCATCATGAGCACAGACGCAGAGATGGAGGCCTATGGCCCCGCGGCCATTTACCTCCGAAAACCAGAGAGGGAGCGGATTGAGGCTCAGACTTCTCCATTTGATGCCAAAACAGCCTTCTTTGTGGCTGATCCTGATAACATGTATTCCAAGGGAAAACTCATCAAAAGAGAGGGTGGCAAAGCCACAGTTGAGACACTGGCACTAGAAGGAAAGGAGTCAAAGACTCTCACTGTAAAAGAAGAGGACATCCATGCCATGAACCCTCCCAAGTACGATAAAATTGAAGACATGGCCATGATGACCCACCTCAATGAGCCTGCTGTGCTTTATAACCTCAAAGAGCGTTTTGCATCATGGATGATCTACACCTACTCTGGCCTGTTCTGTGTCGTGGTGAACCCCTACAAGTGGCTTCCTGTGTACGATGCTCAGGTTGTTAATGCATACAGAGGCAAGAAGAGGATTGAGGCTCCACCACACATCTTCTCCATCTCTGATAATGCCTATCAGTTCATGCTCACTGATCGTGAGAACCAGTCTGTCCTTATCACTGGAGAATCTGGTGCAGGAAAGACTGTCAACACCAAGCGTGTCATCCAGTACTTTGCAACAATTGCAGTGGCTGGAGCTAAGAAACCAGAAAGTGGAAAAATCCAGGGTTCGCTGGAAGATCAAATCATTGCAGCCAACCCTCTACTAGAGGCCTATGGTAATGCCAAGACTGTGAGGAATGACAACTCCTCTCGTTTTGGTAAATTCATCAGAATCCACTTTGGCTCTAGTGGCAAGCTGGCCTCAGCTGATATCGAAACGTATCTGCTGGAGAAGTCCCGTGTCACTTTCCAGTTGTCTGCTGAGAGAAGCTACCACATCTTCTATCAGCTGATGACTGGCCACAAGCCTGAGCTCCTGGAGGCCCTTCTAATTACTACCAACCCGTATGACTACCATATGATCAGTCAGGGTGAAATCACTGTCAAAAGCATCAATGATGTGGAGGAGTTCATTGCAACCGATACTGCTATTGACATCTTGGGCTTCACTGCTGAGGAGAAGATTGCCATCTACAAGCTGACTGGAGCTGTGATGCATCATGGTAACATGAAATTTAAGCAGAAACAGCGTGAGGAGCAGGGTGAACCTGATGGCACTGAGGAGGCTGATAAAATTGCCTACCTCATGGGCCTGAATTCAGCTGACATGCTAAAAGCTCTGTGCTACCCAAGAGTCAAGGTTGGAAACGAGATGGTGACCAAAGGTCAGACCGTACCACagGTCTACAATGCTGTCAGTGCTCTGTGCAAGTCCgtctatgagaaaatgttcTTGTGGATGGTCATCCGTATCAATGAGATGCTAGACACAAAGCAGCCAAGACAGTTCTTCATTGGGGTGTTGGATATCGCTGGATTTGAGATCTTTGATTACAACAGCTTGGAGCAACTCTGTATCAACTTTACCAATGAGAAACTACAGCAGTTCTTCAACCACCACATGTTTGTCCTGGAGCAAGAGGAGTACAAGAAAGAAGGCATTGAATGGGAGTTCATTGACTTTGGTATGGACTTGGCTGCCTGCATTGAGCTTATCGAGAAGCCAATGGGCATTTTCTCCATTCTTGAAGAGGAGTGCATGTTCCCCAAGGCTACAGACACTTCATTTAAGAACAAGCTGCATGATCAGCATCTTGGCAAGACCAAGGCCTTTGAGAAGCCCAAGCCTGGAAAGGGCAAGGCTGAGGCTCACTTCTCCCTGGTTCACTATGCTGGTACAGTGGACTACAATATAACTGGCTGGCTGGACAAGAACAAGGACCCCCTGAATGACTCAGTTGTTCAACTCTACCAAAAATCTGCAAACAAACTGCTGGCAATGCTGTATGCAGCCCATGCTTCGACCGAGGAATCTGGTGGTGGCAAAAAGGGTGGTGGAAAGAAGAAAGGTGGTTCCTTCCAGACTGTGTCTGCTCTTTTCAGGGAGAACTTGGGCAAGCTGATGACCAACTTGAGGAGTACTCATCCTCATTTTGTGCGCTGCCTGATTCCTAATGAATCAAAGACCCCAGGTCTTATGGAGAACCACTTGGTCATCCACCAGCTGAGGTGTAACGGTGTGCTGGAAGGCATCAGAATCTGCAGAAAGGGCTTCCCCAGCAGAATCCTCTATGGTGACTTCAAGCAGAGATACAAAGTATTAAATGCTAGTGTCATCCCCGAGGGACAGTTCATTGACAACAAGAAAGCTTCAGAGAAGCTGCTGGGCTCCATTGATGTGGACCACACTCAGTACAAGTTTGGACACACAAAGGTGTTCTTCAAAGCTGGTCTGCTGGGTACCCTGGAAGAGATGAGAGATGACAAACTGGCTTCACTGGTGACAATGACTCAGGCTCTTTGCAGAGGTTTCCTTATGAGGAGAGAGTTTGCTAAGATGATGGAGAGGAGaGATGCAATCTTCGCCATCCAGTACAACATCAGATCATTCATGAATGTGAAGAACTGGCCATGGATGAATCTGTACTTCAAGATCAAGCCTCTTCTGAAGAGTGCTGAGACTGAGAAGGAGCTGGCTCAGATGAAAGATAACTATGATAAGATGAAAACAGACCTGGCTACTGCCCTGGCCAAGAAGAAGGAACTGGAGGAGAAGATGGTTTCCCTGCTGCAGGAAAAGAATGACCTGCAACTGCAAGTAGCATCTGAAAGTGAGAACCTGTCTGATGCTGAGGAAAGGTGTGAGGGGCTCATTAAGAGCAAAATCCAACTTGAGGCCAAACTCAAAGAGACAACTGAAAGactggaggatgaagaggaaatgAATGCAGAGCTGACTGCCAAGAAGAGGAAGCTGGAGGATGAATGCTCTGAGCTGAAGAAAGACATTGATGACTTGGAGCTCACCTTGGCTAAAGTGGAAAAGGAGAAACATGCCACAGAAAACAAGGTCAAAAACCTGACAGAGGAGATGGCATCTCAAGATGAGTCTATTGCCAAGTTAACCAAGGAGAAGAAAGCCCTCCAAGAGGCCCACCAGCAAACACTTGATGATCTCCAGGCAGAGGAAGATAAAGTCAACACTCTGACCAAGGCCAAGACTAAGCTGGAACAGCAAGTGGACGATctTGAGGGATCACTGGAGCAAGAGAAGAAGCTCCGCATGGACCTTGAGAGAGCCAAGAGGAAGCTTGAGGGAGATCTGAAACTGGCCCAGGAATCCATAATGGATCTGGAGAATGACAAGCAGCAATCTGATGAGAAACTGAAGAAGAAGGACTTTGAGACCAGCCAGCTTCTCAGCAAGATTGAAGATGAACAGTCTCTTGGTGCTCAGTTTCAGAAGAAGATCAAGGAACTGCAGGCTCGTATTGAGGAGCTTGAGGAAGAGATTGAAGCTGAGAGGGCTGCTCGGGCGAAGGTAGAGAAGCAGAGGGCGGACCTCTCCAGGGAGCTGGAGGAGATCAGCGAGAGGCTTGAGGAAGCTGGAGGAGCAACAGCCGCTCAGATTGAGATGAACAAGAAGCGTGAAGCTGAGTTCCAGAAGCTGCGTCGTGATCTTGAAGAGTCGACCCTGCAGCATGAAGCTACCGCAGCAGCTCTCCGCAAGAAGCAGGCCGACAGTGTTGCAGAGTTGGGAGAGCAGATCGACAACCTCCAGCGTGTAAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGTACAAGATGGAGATTGATGACCTTTCCAGCAACATGGAGTCTGTTGCCAAAGCAAAGACCAATCTGGAGAAAATGTGCCGAACTCTTGAAGACCAATTAAGTGAACTCAAGAGCAAAAATGATGAGAACGTTCGCCAGCTAAATGACCTCAGTGCACAGAGGGCAAGACTGCAAACAGAGAACGGTGAGTTCACTCGCCAGGTGGAGGAGAAGGAAGCTCTTATTTCCCAGTTCACCAGAGGCAAACAGGCTTACACTCAGCAGATTGAAGAACTTAAGAGACACATTGAGGAGGAAGTGAAGGCCAAGAACGCCCTGGCCCATGCTGTTCAGTCAGCCCGCCATGACTGTGATCTGCTCAGAGAGCAGtttgaggaggagcaggaggccaAGTCTGAGCTGCAGCGAGGAATGTCCAAGGCCAACAGCGAGGTGGCTCAGTGGAGAAGCAAATATGAGACTGATGCTATTCAGCGCACTGAGGAACTGGAGGAGGCAAAGAAAAAGCTTGCCCAGCGCCTGCAGGATGCTGAGGAATCCATTGAGGCTGTGAACTCTAAGTGTGCCTCTCTGGAAAAGACCAAGCAGAGGCTGCAGGCGGAGGTGGAGGACCTTATGATTGATGTGGAGAGAGCTAATGGTCTGGCTGCCAACCTTGACAAGAAGCAGAGGAACTTTGATAAGGTCCTGGCAGAATGGAAACAGAAATATGAGGAGAGCCAGGCAGAGCTGGAAGGAGCCCAAAAGGAGGCTCGTTCTCTCAGCACTGAACTGTTTAAGATGAAGAACTCTTATGAGGAGGCTCTTGATCAGCTGGAGACCATGAAAAGAGAGAACAAGAACCTGCAGCAGGAGATCTCAGATCTGACTGAACAGATTGGTGAGACTGGAAAAAGCATCCATGagctggaaaaagcaaaaaagacagtagaaagtGAGAAGGTTGAAATTCAGACTGCCCTGGAGGAAGCAGAGGGTACACTGGAGCATGAGGAGTCCAAGATTCTCCGTATTCAACTTGAGCTCAACCAGGTCAAAAGTGAGGTTGACAGAAAGCTGTCCGAGAAGGATGAGGAGATGGAGCAGATCAAGAGGAACAGCCAGAGGGTGATAGACTCCATGCAGAGCACTCTGGATGCTGAGGTCAGGAGCAGGAATGATGCCCTGAGAATCAAGAAGAAGATGGAGGGAGACCTGAATGAGATGGAGATTCAGCTGAGCCATGCCAACAGGCAGGCTGCTGAGGCCCAGAAACAACTGAGGAATGTCCAGGGACAGCTCAAGGATGCCCAACTGCACCTTGATGATGCTGTCAGAGGACAGGAAGACATGAGGGAGCAGGTTGCCATGGTGGAGCGTAGAAATGGCCTGATGCTGGCTGAGATTGAGGAGCTGAGAGCCGCTCtggagcagacagagagaggacgcAAAGTGGCTGAGCAAGAGTTGGTTGATGCTAGTGAGCGTGTCGGACTGCTTCATTCTCAGAACACCAGTCTTCTGAACACCAAGAAGAAGTTGGAGACTGACTTTGTCCAGGTTCAGGGTGAAGTGGAGGATTTAGTTCAGGAATCAAGAAATGCTGAGGAGAAAGCCAAAAAGGCCATCACTGATGCTGCCATGATGGCCGAGGAGCTGAAAAAGGAGCAGGACACCAGTGCTCACCtagagaggatgaagaagaacctGGAGGTCACAGTAAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGAACCTCGCCATGAAGGGTGGCAAGAAGCAGCTCCAGAAACTGGAGTCCAGGGTGCGTGAGCTGGAAGCTGAAGTTGAGGGTGAGCAGAGACGTGGAGCTGACGCTATTAAAGGTGTCCGCAAATATGAGAGGAAAGTGAAGGAGCTGATCTACCAGACTGAGGAGGACAAGAAGAATGTGACCAGACTTCAGGATCTGGTGGACAAGCTGCAGCTCAAAGTCAAGGCTTACAAGAGACAGGCTGAGGAGGCTGAGGAGCAGGCCAACACTCACATGTCCAGGCTGAGAAAGGTTCAGCATGAGCTGGAGGAAGCTCAGGAGCGTGCTGACATCGCTGAGTCCCAGGTCAACAAGCTGAGAGTCAAGAGCCGTGATGCTGGAAAGGGAAGTGACTCTGCTGAATGAGATACAAGAGCCGGCTGAGGCATGAGTTCATACAATATGAGCCACTGAGAATTTTCTTCTGTTAACCGTCAATAAATGTTAATCATGACTCAAGta

Function

GO: NA

KEGG:

id description
K24220 MYH1s; myosin heavy chain 1/2/3/4/8/13/7B/15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210781 lncRNA downstream 1312 16280383 ~ 16281568 (-) True G155508
TU210780 lncRNA downstream 2656 16279491 ~ 16280224 (-) True G155507
TU210771 lncRNA downstream 20850 16259819 ~ 16262030 (-) True G155500
TU210762 lncRNA downstream 59630 16204528 ~ 16223250 (-) True G155493
TU210743 lncRNA downstream 110575 16170923 ~ 16172305 (-) True G155481
TU210786 lncRNA upstream 4123 16300547 ~ 16300761 (-) True G155512
TU210807 lncRNA upstream 69578 16366002 ~ 16366852 (-) True G155532
TU210880 lncRNA upstream 325442 16621866 ~ 16623280 (-) False angptl6
TU210927 lncRNA upstream 408111 16704535 ~ 16725040 (-) True G155619
TU210945 lncRNA upstream 435917 16732341 ~ 16733171 (-) True G155637
XM_039824691.1 mRNA downstream 37455 16230459 ~ 16245425 (-) True LOC120574432
XM_039824690.1 mRNA downstream 53023 16221359 ~ 16229857 (-) True brd4
XM_039824890.1 mRNA downstream 67487 16208250 ~ 16215393 (-) True lpar2a
XM_039824891.1 mRNA downstream 67547 16208250 ~ 16215333 (-) False lpar2a
XM_039824889.1 mRNA downstream 67922 16208250 ~ 16214958 (-) False lpar2a
XM_039824884.1 mRNA upstream 44670 16341094 ~ 16344963 (-) True nr5a5
XM_039824922.1 mRNA upstream 49954 16346378 ~ 16348909 (-) True soul5
XM_039824838.1 mRNA upstream 72182 16368606 ~ 16397486 (-) True notch3
XM_039825838.1 mRNA upstream 137199 16433623 ~ 16439841 (-) True rdh8a
XM_039825271.1 mRNA upstream 302834 16599258 ~ 16615856 (-) True trip10a
TU210768 other downstream 23855 16230784 ~ 16259025 (-) False LOC120574432
TU210769 other downstream 37549 16230784 ~ 16245331 (-) False LOC120574432
XR_005641873.1 other downstream 126813 16153787 ~ 16156067 (-) False LOC120574545
XR_005641872.1 other downstream 126813 16153787 ~ 16156067 (-) False LOC120574545
TU210689 other downstream 126853 16153851 ~ 16156027 (-) False LOC120574545
TU210878 other upstream 273022 16569446 ~ 16642131 (-) True G155583
TU211128 other upstream 736625 17033049 ~ 17035018 (-) False polr3k
TU211291 other upstream 1119101 17415525 ~ 17415841 (-) True G155888
unassigned_transcript_855 other upstream 1450162 17746586 ~ 17746657 (-) True trnat-cgu
TU211468 other upstream 1723587 18020011 ~ 18022964 (-) False psmg3

Expression Profile