RNA id: XM_039824845.1


Basic Information

Item Value
RNA id XM_039824845.1
length 4708
RNA type mRNA
GC content 0.56
exon number 27
gene id adgrl1a
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15894009 ~ 15990185 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCAAATTTGGAAAgTAAGGTCCTCTATCCTTGCCTCGTCATCAGCAGGTTACCAGAGTTAAGgATCACCTACGCATTAGCACCACCCTTTGCCCTGCCCCCTGGTCAGCCTCCAACATGGCTCTAGCAGTCTGGATCATCTTCACCTGTGCTGTTGCTTTCAGCAATGTTGCTCCATCCTCACCAGCTCTGAGCCGGTCAATGATGCCCTTCGGCTTGATGCGTCGAGAGCTGGCATGTGAAGGCTACCCGATCGAGCTGCGCTGCCCTGGAAGTGATGTCATCATGATTGAGACAGCCAACTACGGCCGCACCGATGACAAGATCTGTGACGCAGACCCCTTCCAGATGGAGAATGTGCAGTGTTACCTGCCCGACGCCTTTAAGATTATGTCACAGAGGTGTAATAACCGCACCCAGTGTGTGGTGGTAGCGGGGTCGGACGTGTTCCCAGACCCATGCCCAGGAACCTACAAGTACCTGGAGATCCAGTATGAGTGTGTCCCCTACAAAGTGGATCAAAAAGTCTTTGTGTGTCCGGGGACGCTGCTGCGGGTTCAGCCGGCTAGCTTACTGCAGGAGGCTGAGCACCAGGCAGGGGCGTGGTGTAAGGACCCGCTGCAGTCTGGGGACCGTCTCTACGTCATGCCCTGGACCCCCTATCGCACTGACGTGCTGTATGAGTATGCCTCCTGGGAAGACTTCAAACAGAACCGACCCACAACCAACTACAAGTTGCCCAACAGAGTTGATGGCACAGGGTTTGTGGTGTACGATGGTGCAGTGTTTTACAACAAAGAACGCACACGAAACATTGTAAAGTATGACTTGCGGACACGCATCAAGAGCGGCGAGGCCATCATCACAAACGCCAACTACCATGACACCTCGCCCTACCGCTGGGGAGGGAAATCGGACATTGACTTGGCTGTGGATGAGAACGGCCTCTGGGTAATCTATGCCACTGAGGCCAACAATGGACGACTGGTGGTCAGCCAGGTGAACCCCTACACCCTGCGCTTTGAAGGCACCTGGGAGACCAGCTTTGACAAGAGGATGGCATCCAACGCCTTCATGGCGTGTGGTGTGCTTTACGCCGTGCGCTCCGTCTACCAGGACGATGACAGCGAAGCAGGCGGCGACCTTGTGATGTATGCATATAATACGAACCGAGCCCGCGAGGAGCCTGTTAACATCGCTTTCCCCAACCCCTATCAGTATATTTCCTCTGTGGACTACAACCCTCGAGACAACCAGCTTTATGTCTGGAACAACTATAATGTGCTGCGCTATCCGCTGGAGTTTGGACCACCAGACCCCACTACGGGCCCACTGACCACCACCCAAGTGACCACCACTCTTCCAGCCAGGCCCTTCACCTCCAGTGCCAGCCCCTCTACCGCCCGGCCTCTGGCCCCCACCTCACACCCAATCGGCTCCATCAACAAGCACCCTGATCTTCGACCAATCACAGCCACTGTGCCTGTCACCCGCCGGCCACCCCTCCCTCCTCAAGGCTCGGAGCCCCATGTCTGTGAGGCCAAGCTGGTCCGTGGTGTCCAATGGCCCTCCACTCAGAGAGGAGAAACAGTAGACCGCCCATGTCCCAAAGGATCTCTAGGCATAGCTTCGTTCCAGTGCTTGGAGGAGCAGGTCATGTGGAACCCACGGGGTCCTGACCTGAGTAACTGCACCTCCCCGTGGGTCAACCAGGTGGCCCAGAAGATAAAGAGCGGCGAGAATGCTGCCAACATAGCTGGAGAGCTGGTGAACCACACACGGGGCCGGATCCAGGCTGGAGATGTCAGCTCGTCTGTGCGACTGATTGAGCAACTGCTGGACATACTGGATGCCCAGCTTCAGGCCCTGAGGCCCGGAAACAAGGAGTCAGCTGCACGAAACTACAACAAGCTCCAGAAGCGAGAGCGGACCTGTCGGGCCTACATTCAGGCGGTAGTGCAGACAGTGGACAACTTGTTACGTCCCGAGGCCCTGGAGTCGTGGCAGGACATGAACAGCACAGAGCAGGCCCACACTGCCACCATGCTACTGGACGTCCTGGAAAAGGGAGCATTCCTTCTGGCCAACAACATGTATGGGATTCACTTTTCTGACCGAGCGCCCAGCATTGATCTCGAGGTGCATGTTCTAAACACAGAGATGGACCTGCAGGACTTGTCCTTTCCACAGAACTATGCCAGTGACAGCACCATCCAGCTTTCAGCTTCCACTATCAAACAGTACAGTCGTAACGGACAAGTCAAGGTGGTGTTCATTCTGTATAAAAACTTGGGATCCTTCCTGTCCACTGAGAACGCCACGGTGAAGATGGAAGTGGATGGGCCAAGCCACGATAAGAAGCGCCTGGCGGTCAACTCTCATGTAATTGCTGCGTCCATCAACAAAGAGTCCAGCAGAGTGTTTCTCATCGAGCCAGTGGTCTTCACACTCAAACATCTACAGTTGGATGATTATTACTCTCCAAATTGCTCCTTCTGGAACTACTCGGAGCGCTCCATGACAGGCCAGTGGTCGTCACAGGGCTGCAAGCTGCTggacaccaacaacacacacaccacctgctcctgcaGCCACCTCACCAACTTTGCCGTGCTCATGGCTCACCACGAGCCCGATTACCAGGGGAGAATGCATGAACTGATCCTGTTTGTGATCACCTGGGTGGGGATTGTCATCTCCCTAGTGTGTCTAGCCATCTGCATCTCCACTTTCTGCTTCTTGCGAGGCCTGCAGACTGACCGCAACACCATCCACAAGAACCTCTGCATCAACCTCTTCATCGCCGAGTTGCTCTTCCTCATCGGCATTGACAAGACAGAATACCATATTGCCTGTCCCATCTTTGCTGGCCTTCTGCATTTCTTCTTCTTGGCTGCCTTCTCCTGGATGTGTCTGGAGGGTGTGCAACTCTATCTCATGCTGGTGGAGGTCTTTGAGAGCGAGTACTCCCGCAAAAAGTACTACTATCTGTGCGGATACTGCTTCCCCGCACTGGTGGTGGGCATCTCTGCGGCTATAGACTACAGGAGCTATGGAACCAAGAAAGCATGCTGGCTGCGAGTGGATAACTACTTCATCTGGAGCTTCATTGGACCCGTTTCATTTGTTATTATGCTCAACCTCATTTTCCTCATGATCACTTTACACAAGATGATCCGCAATTCTTCAGCACTCAAACCTGACTCCAGCCGTCTGGATAACATTAAGTCATGGGCTCTGGGGGCCATTGCTCTGCTGTTCCTGCTGGGCATGACGTGGGCCTTTGGCCTCCTCTTTATTAATGAGAACACAGTAATCATGGCCTATCTCTTCACCACCTTCAACGCCTTCCAGGGCATGTTTATCTTCATCTTCCACTGTGCACTGCAGAAGAAGGTTCATAAGGAGTACAGTAAGTGTCTGCGTCACTCCTACTGCTGCAGCCGCACCTCCACCACCAGCTCCCACGGCTCCCTGAAGAACTCAGGCCTGCGTGCCAACAACCGCTACTACAGCGGCAGCCAAGCTCGCCATGCAGCGGCCCACCGACAGAGTCGGATCCGCAGGATGTGGAACGACACGGTTCGAAAGCAGACAGAATCTTCTTTCATGGCGGGAGATATCAATAGCACCCCAACACTCAACCGCGCAACCATGGGCAACCACCTTTTGACGAACCCAGTGTTACAGACTCGCACTGGTACCTCTCCTTACAACACTCTACTGGCTGAGAGCTTCACCCCACCCTCACCTGGCGTCTTCAACTCTACCGGAACCTTCCGTGACCCAAAGAGCACGTTATCAAAGGCCCGCGACCCCTGTGGGATGGAAACCCTGCCCTTGAATGGTAACTTCAACAACAGCTACTCCCTGCGCACTGGCCCAGGGGGTGTAGGCGGGGGCAGCTGTGACTTCCTTGGTGGTGGGGGTAAAGACAGTCCCCCGCCCCTCCTCAATCCCCGCGGCTCAGAGGCACTGGTAGGCGGAGGCATCCGACGAAACCTCTCTGATGCTGCGGCCTTCGAGAAAATGATCATCTCTGAGCTTGTGCACAACAACCTAAGAGGTGGTGttggaggaggaagtggaggAGGTGACGTAGCAGACAGGGTGTGCGGCAGCCTGGCCAGGGGACGTCCTCACGGTGGGGTTGGTCGGGGGACATCAGGTGCCGGGCCAGAGCCATGTATGAGCATGGATGAAGACGAAGACTTTCTGAGAGAGGGGCGGCAGCACACCCCGCAGGATGTGGAGCTGCTTTATAAAGCTCTGGAGGAGCCCCTGCTGTTGCAGCGAGCCCAGTCGGTCCTCTACCAAAGCGATCCAGAGGAGTCAGAGAGCTACACGGCCGACCTCACTGAGAGCCTGGGCAACAGCGGCCACAGTGGCCAGAGTGCTGGTGGGCAGGCAGGCAACAGAGCGCCAGACTCCCCTGCCCGTGACTCCCTGTACACCAGCATCACCAACCTGCGAGACTCACCCTACCCTGACAGCAGTCCTGAGCCCCTGGAGGTGGTCCCCCGTACGGCCCAGCCCCCTGAGGAGCTGTACTACAGCTCCGGGAGGCCCGCCCTGGGCTCTCGTGGGGCCCCCATGCAGACCTTCTACCAGGCCCCACCCAGGAGACCGAGTGGGGAAGGACACCTGGCTCAGGAGCCTGTCCACAATGAGGGAGATGGACAGATGcagctggtcaccagcctgtgA

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210562 lncRNA downstream 7653 15891021 ~ 15891931 (-) True G155359
XR_005641874.1 lncRNA downstream 73930 15822991 ~ 15825654 (-) True LOC120574547
TU210521 lncRNA downstream 73935 15823893 ~ 15825649 (-) False LOC120574547
TU210500 lncRNA downstream 125276 15728933 ~ 15774308 (-) True G155307
TU210486 lncRNA downstream 204026 15694773 ~ 15695558 (-) True G155298
TU210686 lncRNA upstream 81201 16053990 ~ 16054756 (-) True G155439
TU210722 lncRNA upstream 137910 16110699 ~ 16112063 (-) True G155460
TU210723 lncRNA upstream 142319 16115108 ~ 16115522 (-) True G155461
TU210724 lncRNA upstream 144330 16117119 ~ 16118492 (-) True G155462
TU210743 lncRNA upstream 198134 16170923 ~ 16172305 (-) True G155481
XM_039824920.1 mRNA downstream 62516 15833500 ~ 15837068 (-) True tmed1a
XM_039824895.1 mRNA downstream 103135 15790051 ~ 15796449 (-) True qtrt1
XM_039824851.1 mRNA downstream 111069 15746791 ~ 15788515 (-) False LOC120574502
XM_039824850.1 mRNA downstream 111069 15746791 ~ 15788515 (-) True LOC120574502
XM_039824914.1 mRNA downstream 154012 15741763 ~ 15745572 (-) True LOC120574537
XM_039824886.1 mRNA upstream 116625 16089414 ~ 16092725 (-) True trim35-13
XM_039824872.1 mRNA upstream 122922 16095711 ~ 16098989 (-) True vac14
XM_039824903.1 mRNA upstream 128955 16101744 ~ 16104608 (-) True LOC120574529
XM_039824899.1 mRNA upstream 133218 16106007 ~ 16107896 (-) True LOC120574526
XM_039824928.1 mRNA upstream 181339 16154128 ~ 16156067 (-) True LOC120574545
TU210517 other downstream 84215 15813058 ~ 15815369 (-) True G155323
TU210507 other downstream 150154 15747317 ~ 15749430 (-) False LOC120574502
TU210508 other downstream 155467 15743675 ~ 15744117 (-) False LOC120574537
XR_005641871.1 other downstream 175162 15717847 ~ 15724422 (-) False tecra
unassigned_transcript_854 other downstream 335380 15564133 ~ 15564204 (-) True trnae-cuc_25
XR_005641873.1 other upstream 180998 16153787 ~ 16156067 (-) False LOC120574545
XR_005641872.1 other upstream 180998 16153787 ~ 16156067 (-) False LOC120574545
TU210689 other upstream 181062 16153851 ~ 16156027 (-) False LOC120574545
TU210688 other upstream 181392 16154181 ~ 16156027 (-) False LOC120574545
TU210768 other upstream 257995 16230784 ~ 16259025 (-) False LOC120574432

Expression Profile