RNA id: XR_005641871.1


Basic Information

Item Value
RNA id XR_005641871.1
length 2650
RNA type transcript
GC content 0.44
exon number 12
gene id tecra
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15717847 ~ 15724422 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTGTAACAAGCGAGGTGCAGAACAGACAGGAGATGTGTCTTATAGCCTATAAGATAGGTCTAATGAGAGCACATTGGCATGTGTCACTGGGTTGGGCTGTATGTGGCTGCCCAAGGTTACCAAGCTGGTGTAGAGCAAATCAGGCAACTTATATTTAGCCTTGCAAATGGCGCGCTATGGATTATGTCTTGGGGCTCTCCAGTTTCGTCTTCAGTGCGTTTTGTAGCATGAAGGGGGGCTGTGGATCATGAAGAGGCTGTTATTCAGGTGAGGAGCAGGTTCACTTCATATTCTTAGACCAGCTCTTCTTCCACTTCTTCTCCCTTTCTTCCCTGCTCACTTTCCCTCCACTCTCTCATCCATACACTCGTATCAAAGTGTTTATGGTCTCACATACTTCTTCTCGACGTGGGGGGCTATTCAGAGCGTCCAAAAGGCACCAAAGAAGACACGCTTGAGTTGGACTGACAGTTGCGTTGAGGGGTGAGCAGGGAGTTGCTTCCCATACCAGGAGAGGACATCCAGTGTGATTGGACGTATCACAGATTATTTCATCAACAGGCTACTGAGATTTGGGATTAAACAGTATCATGGATGTACTCGCTTTAGAGGCAAAGAGTGTAAATGGAGCAGATGCTGAAAAGAAGTCTTCATCAAGGCCAAAACCGAAACCTCCTAAAAAGGCCAAAAGGATTGTTTACTTTGAGGTGGAGATCTTGGACTCCAAGACTAAAGagaaactgctgctgctggacaaGGTGGAACCAACTGCCACTGTTTTCGACATCAAAGCTTTGTTTCAAAAATCATATCCAAAGTGGTATCCAGCCAGACAGTCCCTTCGTTTGGATCCAAAGGCCAGATGTCTCAGGGATGAGGAAATTCTGCAGACACTTCCTGTGGGAACCACAGCCAGCTTTTACTTCAGTGACCTAGGACCTCAGCTCACATGGGGAACCGTGTTCCTAGCAGAGTGTGTTGGTCCACTGGTCATATACTTAATGTTCTACTTCCACCTTCCCTTCATCTACTCTCCGAAATATGACTTCACCAGCAGCAAGCACTGGGTCGTACACTTGGCCTGCATGTGTCACTCCTTCCACTACATCAAGAGGATCCTGGAGACACTGTTTGTCCACCGTATCTCCCATGGGACCATGCCTCTCAGAAACATATTTAAGAACTGTGGCTATTACTGGTGCACTGCAGCTTGGATGGCGTACTACATTAACCACCCTCTCTACACCACACCCTATTACGGGCAGCAGCAGGTGAATACAGGACTTTATATTTTCTTGTTCTGTCAAGTAGGGAATTTTTCCATCCATGTCGCTCTTCGTAACCTCAAACCACCAGGTTCAAAAATCAAGAAGATTCCTTACCCAACGAAAAATCCCTTCACATGGATGTTTTGGCTGGTCTCTTGTCCGAACTACACATATGAGATGGGCACCTGGATTGGCTTCACAGTGATGACCCAGTGTGTGCCTGTGGCTTTCTTCACTCTCGTGGCCTTCATTCAGATGACTGTGTGGGCCAAAGGCAAACACTGCGGCTACTTAAAGGAGTTCAGAGATTATCCGACCCTGCGCTCCTCCATACTCCCTTTCATCCTGTAGAGCTGGGCACAGAAAACAACGGTCACTACACACAGCCGGTTCTTTTTAAGGGCCTCTCCATCCACTGGATGTCAGAAAGTGTGTGCTGAGGtcaacagcatggatggattttggTCATATGGATTCCATGTAACATTTTCTTACATGTCACTCCATAAGGAGTAGCTGTTACGGTTACTCTGAGCGTTGGACCGGTGAATGCAGGACTGTTAGAGGCAAAGGAAGCCATCAGAGATTTTGGCAACCTGATCAGTGACGTTTCCCACCAAGAGGCTAATCTGCAGTGTCCAATTAGTGTGCAGCCTGGAGCTGAGAACTTTGTGGCCTCCTGCAGTGTTCTACTGATCCAAGTGACATTTACACCATGATAGTACTAGTGCTATCTGGGTTAGAAATAGAATGGGTGGGAAAGTGTTTTTCTTGTATATCTAAAATAATGGAGAGAAAAACACTGCTGATAGCATTAACACGCACATCCTTTAAAATATACCTTACTTACACATGATTATAGTGCAGAGTGTTCaattgaagtaaaaaaaaaaaaggttttagtcATCAAACCATTGTCATAGTATTATATGCACATATTTATAAcacatatttattattatgtttcTCTGCATTGTTGGCGCTGTGgcgatgttttatttttatactatTCTGAAGAGTTGTGCAGCTACAAACACATACTGAGACTTTATCTGGTGGTGCTTTCCAGGATTGGATAAGGATGTGGGAAAAACTTGCAAAATTGTTTATTCTTTGCTATTCCATTTTCACTGAATGTGCATTTCACAGAATGCTGCATCGACTGAaccttttaaatgaaatgaggaACTTCTGCGTGAAGAGACCATTCAGTGTCGAGCAGGACTTCTATCTAAAGTGGAAAGTTTGTTTGCAATATTTGATTGACACTGTAGAGGGGCCTTCACACCCTCTTAAGGCAACGCTGACCCACTGAATCAATTGTTTTTAGGCAAACTATAAATACAACGAGTGTAATAGGGtaatgggtaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210486 lncRNA downstream 22289 15694773 ~ 15695558 (-) True G155298
TU210482 lncRNA downstream 26195 15682369 ~ 15691652 (-) True G155295
TU210397 lncRNA downstream 85011 15551004 ~ 15632836 (-) True G155239
TU210400 lncRNA downstream 162961 15554043 ~ 15554886 (-) True G155242
TU210389 lncRNA downstream 173830 15541557 ~ 15544017 (-) True G155234
TU210500 lncRNA upstream 4511 15728933 ~ 15774308 (-) True G155307
XR_005641874.1 lncRNA upstream 98569 15822991 ~ 15825654 (-) True LOC120574547
TU210521 lncRNA upstream 99471 15823893 ~ 15825649 (-) False LOC120574547
TU210562 lncRNA upstream 166599 15891021 ~ 15891931 (-) True G155359
TU210686 lncRNA upstream 329568 16053990 ~ 16054756 (-) True G155439
XM_039824926.1 mRNA downstream 44392 15670165 ~ 15673455 (-) False crb3a
XM_039824925.1 mRNA downstream 44392 15670165 ~ 15673455 (-) True crb3a
XM_039824836.1 mRNA downstream 53250 15662274 ~ 15664597 (-) True LOC120574497
XM_039825320.1 mRNA downstream 72225 15605503 ~ 15645622 (-) False gcgra
XM_039825322.1 mRNA downstream 72225 15605503 ~ 15645622 (-) False gcgra
XM_039824914.1 mRNA upstream 17341 15741763 ~ 15745572 (-) True LOC120574537
XM_039824851.1 mRNA upstream 22369 15746791 ~ 15788515 (-) False LOC120574502
XM_039824850.1 mRNA upstream 22369 15746791 ~ 15788515 (-) True LOC120574502
XM_039824895.1 mRNA upstream 65629 15790051 ~ 15796449 (-) True qtrt1
XM_039824920.1 mRNA upstream 109078 15833500 ~ 15837068 (-) True tmed1a
unassigned_transcript_854 other downstream 153643 15564133 ~ 15564204 (-) True trnae-cuc_25
TU210305 other downstream 268344 15443164 ~ 15449503 (-) False metrnla
unassigned_transcript_853 other downstream 707507 15009798 ~ 15010340 (-) True LOC120573850
unassigned_transcript_852 other downstream 717703 14998773 ~ 15000144 (-) True LOC120574429
TU210040 other downstream 860290 14851939 ~ 14857557 (-) False LOC120575102
TU210508 other upstream 19253 15743675 ~ 15744117 (-) False LOC120574537
TU210507 other upstream 22895 15747317 ~ 15749430 (-) False LOC120574502
TU210517 other upstream 88636 15813058 ~ 15815369 (-) True G155323
XR_005641873.1 other upstream 429365 16153787 ~ 16156067 (-) False LOC120574545
XR_005641872.1 other upstream 429365 16153787 ~ 16156067 (-) False LOC120574545

Expression Profile