RNA id: XM_039824920.1


Basic Information

Item Value
RNA id XM_039824920.1
length 2373
RNA type mRNA
GC content 0.41
exon number 4
gene id tmed1a
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15833500 ~ 15837068 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTACAACATTTGTTAGAAGGAATTAATCTTTGAAAATAATATTTTGCAAGTAAAGATCAGTACAAAAAGTATATAtagtaattaaaacaaaaatctaaCTTTTACTTACACTAATTTTACAGGAAGTCATATACACCAGGCACAGTCATGCATCATCAAGCTCATCATGTAGTACATTGCACCTTGTCACCCCACCTCAGTTTTGCATGTGGCTGCAGTTCAGACTGCAGAACGCAAATGGTCTGCGCAGATAGTACACTCCAATTATTCAGCTCTGATCAAGGAACTTTACTGTGAGGCTATTTTCCAACCGTCGGAGTATGAGAGTCAGCAattacacatatacagtaaacTTGCTTTATCGTGCATGTGTAACATAGAACAAAGTTGCTCATAGTTGGCGAAAGTGGATTACATGAACTATGCATCGCGAGTGGAGGATGATAAGTGTGTCTGCTGAGCTCTGTTTGCTGGCATGTTTAATTCTGATTGCGGACTTGACTTTGGGTTTAGGGCCAAAGAAAGACATGGAGTTTACATTTCTATTATCTGCTGGCAGCACAGAGTGTTTTTACCAAACTACAGCAAAGAACGACAGCATGGAAGTTGAATACCAGGTGATAGCTGGGTCAGGTCTGGATGTTGGCTTTGCCCTCATTTCACCCAGCGGACACCGGCTGGTCTCTGACTTCAGGAGATCTGATGGCATTCACATGGTGGACCTCACAGAGGTTGGCGACTACCGGTTATGTTTCGACAACAGCTTTAGTAAACTCTCAGAGAAGATGGTGTTCTTTGAGGTGATTATTAATGGTCAGAGCAGTGCAGGCGGAGGCCAAAATGAGTGGGCGGACGTGGCCACGACAGAGAGCATGTTGGAGTATAAACTGGAGGACATTAGGACGAGGATGGACTCTGTGTACCAGCGCCTGGAGAGGAGCCGTCAGGTCCTCACTGTGCTGCGGGCCTTAGAGGCGAGGGACCGCTACCTTCTGGAGGACAACCTGTGGCAGGTGTCCTTCTGGTCCTGCCTCAACCTGCTTGTCATGCTCACCGTCGCTGTCACTCAAATCTACACCCTGCAACGCCTCTTTGATGACACCAAGCGGGTCTGCACATAGTCACAACAAAAACTACCTCCAGCCAAGAGAGTGCAGCACCTGCACAACTTGAACATTTGACCCAAAACCTTTTACAGTCTATACCCTAACTGACATGTGCACTGGGAACCTaatttaaagggatagttcacaCTTTTGGAAAACTGATTCATCATTGATGTTTTTAATTCCAGTCACATGgtaattatatatacagtactgccatatgcacacacagaagcacatactgtgcatacattaaacatacataaatacacacacaaatacttgCAGCCAGTGGCACCCACAGAATTTTTTCAAAGGGGTGGCCAGATGGGGTCCACTGAAAAAACTGGGGTGGCACACCAAAGCCAAAAGCCTGAATTTCAGGAATTCTATTATGCTGATAAGGCTGGTTGAAAATGATGTCTATATATGAGTTAAGGAATTGCATACTGATATACTTTGATTTCGTATTTTACAGTTGTTACTAATTATCTGATGTGCAGACTAATACCGATACAATTACAATTTTGAGTTCCACAACGTTAATTTACTGCGTCATGTATCCAAATGTCAGGCAATGTATCGTTCTTCAACTAGGCTAGGCTTGTCCATTTCCTTAAAAAATGCATAAGCAGTTCCCACTACTTGCAGCACTGATATCAGTTAATGCCACTGGGGAAGCTAGAAAACCACAGCTGTTCTGACTGGAATcttgttttattgattttcagaCTACATTCTGCAGGACATTTTTCTAGACTGTATtttatcaaaacaaaacaaacaaaatatcagAAAACTCACCTactaagtgtattttttttatttaactaagCCTCTGGCTGTTTAGAAAGATCACATCTAAAATATTTATTGTGattaaaaaacaagtatttacaCAGTCTGATCCTGATCATTTTCTACATCTGGAGGTTTAATACGCAGAAATCAGTAGTCATGCAGATGTCAAATTAGTTTTGACCGAAACATTAATTTCCTTGCCATTATTTGGGTGCATTGCAGTCATTTGGTTCATACAATTGCACTAAGGggtaaaacatactgtacataaggCTGTACTTATTGTGCATTTCAATCACTACCATTATATTTTCTCACATTGTTGAAACTTTGTGGGACTGCACAGCATCATCATTAACATTTTTATGTCATAAAACATATTCAATGGTCATGCTCCACCACTAAAAGGTATTTTCCGTTGTCATCACATAAGAGAGACATGACAATAAAAACAGTgccaagtctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641874.1 lncRNA downstream 7846 15822991 ~ 15825654 (-) True LOC120574547
TU210521 lncRNA downstream 7851 15823893 ~ 15825649 (-) False LOC120574547
TU210500 lncRNA downstream 59192 15728933 ~ 15774308 (-) True G155307
TU210486 lncRNA downstream 137942 15694773 ~ 15695558 (-) True G155298
TU210482 lncRNA downstream 141848 15682369 ~ 15691652 (-) True G155295
TU210562 lncRNA upstream 53953 15891021 ~ 15891931 (-) True G155359
TU210686 lncRNA upstream 216922 16053990 ~ 16054756 (-) True G155439
TU210722 lncRNA upstream 273631 16110699 ~ 16112063 (-) True G155460
TU210723 lncRNA upstream 278040 16115108 ~ 16115522 (-) True G155461
TU210724 lncRNA upstream 280051 16117119 ~ 16118492 (-) True G155462
XM_039824895.1 mRNA downstream 37051 15790051 ~ 15796449 (-) True qtrt1
XM_039824851.1 mRNA downstream 44985 15746791 ~ 15788515 (-) False LOC120574502
XM_039824850.1 mRNA downstream 44985 15746791 ~ 15788515 (-) True LOC120574502
XM_039824914.1 mRNA downstream 87928 15741763 ~ 15745572 (-) True LOC120574537
XM_039824905.1 mRNA downstream 109078 15717847 ~ 15724422 (-) True tecra
XM_039824840.1 mRNA upstream 56941 15894009 ~ 15949589 (-) True adgrl1a
XM_039824842.1 mRNA upstream 62516 15899584 ~ 15990185 (-) False adgrl1a
XM_039824843.1 mRNA upstream 62516 15899584 ~ 15990185 (-) False adgrl1a
XM_039824844.1 mRNA upstream 62516 15899584 ~ 15973972 (-) False adgrl1a
XM_039824845.1 mRNA upstream 62516 15899584 ~ 15972789 (-) False adgrl1a
TU210517 other downstream 18131 15813058 ~ 15815369 (-) True G155323
TU210507 other downstream 84070 15747317 ~ 15749430 (-) False LOC120574502
TU210508 other downstream 89383 15743675 ~ 15744117 (-) False LOC120574537
XR_005641871.1 other downstream 109078 15717847 ~ 15724422 (-) False tecra
unassigned_transcript_854 other downstream 269296 15564133 ~ 15564204 (-) True trnae-cuc_25
XR_005641873.1 other upstream 316719 16153787 ~ 16156067 (-) False LOC120574545
XR_005641872.1 other upstream 316719 16153787 ~ 16156067 (-) False LOC120574545
TU210689 other upstream 316783 16153851 ~ 16156027 (-) False LOC120574545
TU210688 other upstream 317113 16154181 ~ 16156027 (-) False LOC120574545
TU210768 other upstream 393716 16230784 ~ 16259025 (-) False LOC120574432

Expression Profile