RNA id: XM_039824961.1


Basic Information

Item Value
RNA id XM_039824961.1
length 3292
RNA type mRNA
GC content 0.46
exon number 14
gene id baiap2a
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15044959 ~ 15100591 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGGAGAGGGAAGGTGTGTTTAGTTGGAGTGGGGTTTCGGGAGCGCTGTATCGTTTCACTCTCGCTGGCGCGTTGCCTCGCCTTTTGTTTGATCAAACTCGTGTATTTACCCGTTCCCCCATTTTACGCGGATACACGTTTGAAGGAAAAAAACGTTTATGGTCCTGGCTGAAGACTTCACGATGTCTCGCACCGACGAGGTTCACCGTTTGACGGAAAATGTCTACAAGACCATCATGGAGCAGTTCAACCCCTGCTTACGGAACTTTGTTGCCATGGGGAAGAACTATGAGAAGGCCCTTGCCAGTGTGACATTTGCTGCCAAAGGCTACTTTGATGCTCTGGTCAGAATGGGGGAACTGGCCAGTGAGAGTCAAGGATCCAAAGATTTGGGGGATGTGCTGTTCCAGATGGCTGAAGTCCACAGACAGATCCAAGTGCAGCTAGAGGAGATGTTGAAATCATTCCACAACGAGCTGCTTTCTGAGCTGGAGAAGAAGGTGGACCTGGATAGTCGTTATCTGACTGCTGCCCTGAAGAAATACCAGATGGAACACAAGAACAAAGGGGAGAGTCTGGAGAAGTGCCAGGCTGAACTGAAGAAGCTGCGCAGGAAGAGCCAGGGCAGCAAGAACCCCTCGAAGTACGGAGAGAAGGAAATGCAGTTTGTGGAGACCATCAGCAGTAAGCAGACTGAGCTGGACACCTTCATCGCTGAGGGGTACAAGACAGCCTTGTCTGAGGAGCGCCGCAGGTACTGCTTCCTAGTGGACCGCCAGTGTGCCGTGGCCAAGAACAGCAGCGCCTACCATGGCAAGGGTAAAGACCTTCTGACTCAGAAGATCCCAGTGTGGCAACAAGCTTGCTCAGACCCCAACAAGCTGCCAGAGAGGGCCATGCTCCTGGCCCAGCAGATGGGCTCTGCCTCCCTCGGGGGCGCAAGCCCCCTGCATACCTCTAAATCCAACTTAGTCATCTCGGACCCTATCCCCGGGGCCCAGCCTCTTCCTGTGCCACCAGAGCTGGCTGTTTTCATGGGCAGTGGCATGGGACACCCAGCGAGGCTGATGGGCCCCGATGGTATGTCCATGGTAAATGGAACAACAGGAGTCCATGGGGAGGAATATTGGACGGATGGAGGCACTATATCAGTGTCCCAAGTTAGGCCTTCATCCCCTCAGACCCAGGCGCAGGGCCAGTCCCAGGCTCAGCCCCAGAGACAGGTCAGCGATGTCTACTCCAACACCCTCCCTGTCCGCAGGCCTGCCCCCGCCAAGAATAAGAACCCCGTGGGAGAGACACGCACCCTGCCCAGGTCCAGCTCCATGGCAGCAGGCCTGGAAAAGAATGGGCGTGCCCGTGTCCAAGCCATCTTCTCCCACGCTGCGGGTGACAACAGCACCCTGCTCAGTTTCTCTGAGGGAGATATAATCACCCTACTAGTGCCTGAGGCCCGTGATGGCTGGCACTATGGGGAGAATGAGAAGAACAAGATGCGTGGCTGGTTCCCATTCTCCTACACACGTGTGGTGCCGGAAAGCGATAATGAGAAGCTCAAAGTGAACCTGCACCATGGGAAAAGTAGCAGCACAGGCAACTTGTTGGAGAGTGATGCATCACTGCCCACACCTGACTATGGGCTGACTGCCCGACTGCTGGCACAGAGCCTAGCACAGACCCGCCCACGCCCCTACAGCATGGCAGGCTTTGGCACACAGCCTGCTATTGAGGATTATGACGGACGCTTTGCCACAAGTGACCGTTCCCTGGAGGTCTACCTCCGGCCCACCTTCACCGATGACCGATCTGCGCCTATCTTCTACTAGCGGCCTGCTGCCCCCTTTTGTCCACTttttaaaggggagagagaaaaatggcCGAAAGTGGCATGTTTGAGTTGTATATTATCACAAGAGGTCCCACAATGCTAAGAATTTAGTTTCTTTGCCATGAAAATTCACTCTGAGAATTTTCGGTTAATCCTTGGGATGTTTTTGCAAGCGCTTTCACAGATGTTGAATGTCTCAGCCTGAACATTCAATTGCAATTGTGAGAGTAgattttattagttatttagaTCACACCAGTTGTGGATAAGGTATGGCTAATAGGTTTTTACAAGTAATGCAGTGGAATTATTATTTATCTGCACTTCTACTATGGGATTTCTTTTGTTCTTCAACACTATACACTGTAAATTTCATTTGAGGATTATTTGCATTAACGAGCTGTTTAGGTGAGGCTTGGGGGTGAATAAGACTATCCACAGCAGTTGTCAGTGCATCACTTTAACATGCACCGACGTGTTGATTGGGTACTGCCACAAATAGCTAGTCTAACTGGTCAGCTGGGGAAAGTAGGATTCTGCTTTTGTTAAGTGATATAGTACTATAGATTTACTAGTTGTGATACAGTATACCCATATTTTCAATGTGGGGACTGTgccttctatttatttttttttaaaacatatgctTCATGCAGCATTGACCCAATCATTCTGTAAACTGGTTTGAGGGCATATGCATCACAGTTCAACTTGTATTTTTATATTCCTGAAAATATAGGTAGGATTGTTtcccttttgttttgtttgcttgtaATGTCAGGACTTTGTTTTTGCTTAGCGATCTCCAGTACAGTGCACTTCCACCAACATAATACAAGaatattttcactattttttccttttctttaaaTTTCAGTAATATCTAAGCTGCCAGATATGAAGCCAATAAATGAAATacagtgcatatatatatattggggcttttaaaaagtatatatatatttagcttTGAGGGAGTGGTAGCTTATCAAATAAGGTACAGTATTAACATTAGCTTTTCATCGTTTATTCTCAGTATTATACACTCATCTGGGAGAAAAGCTTAGAGCAGAGGCAATTATCTACAGTTTGATGTGTGGGAATAGAAGTGGAACCGTATGTGATGAAAAAGAAatggtgtgtggttgtgtgaaTGAGCTAAAATGCCTCTTAGTTGCAATAAATCAAGTTACATTGTGAAAAGTCCATTTTCCATGGATGAGAGTTAAATCATGAAAAGTCAGTTTTCCATGAGTGAGTCCTTTACACTGAGTGATATGATCAGGCTTTTATTACACAGCTCATTGGCAGCAAGtttcaaatgcatttttttacttttatatagCTTTCATTGTCTATTTCTCACCTTTGTCCCGGTTTGTATTATATCTGTACTGTACAGAAAGTGCATATAAATTATCTTGTccaaaataaatctaaatggGCAGAAACTTCATACTttta

Function

GO:

id name namespace
GO:0046847 filopodium assembly biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007165 signal transduction biological_process
GO:0017124 SH3 domain binding molecular_function
GO:0008093 cytoskeletal anchor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210145 lncRNA downstream 37937 15003056 ~ 15007022 (-) False LOC120573849
TU210111 lncRNA downstream 59595 14985134 ~ 14985364 (-) True G155047
TU210102 lncRNA downstream 81113 14963233 ~ 14963846 (-) True G155039
TU210082 lncRNA downstream 149335 14895379 ~ 14895624 (-) True G155025
TU210075 lncRNA downstream 162054 14879627 ~ 14882905 (-) False ush1ga
TU210204 lncRNA upstream 33367 15133957 ~ 15139853 (-) False LOC120574278
TU210217 lncRNA upstream 55839 15156429 ~ 15162435 (-) True G155106
TU210240 lncRNA upstream 211490 15312080 ~ 15313592 (-) True G155126
TU210269 lncRNA upstream 267639 15368229 ~ 15404569 (-) True G155151
TU210385 lncRNA upstream 426359 15526949 ~ 15527605 (-) True G155232
XM_039823718.1 mRNA downstream 36247 15003013 ~ 15008712 (-) False LOC120573849
XM_039823717.1 mRNA downstream 39679 15003013 ~ 15005280 (-) True LOC120573849
XM_039823823.1 mRNA downstream 69560 14973352 ~ 14975399 (-) False LOC120573908
XM_039823822.1 mRNA downstream 69954 14973352 ~ 14975005 (-) True LOC120573908
XM_039824989.1 mRNA downstream 75482 14964295 ~ 14969477 (-) False ccdc137
XM_039824579.1 mRNA upstream 1391 15101981 ~ 15106625 (-) False LOC120574279
XM_039824577.1 mRNA upstream 1391 15101981 ~ 15106615 (-) True LOC120574279
XM_039824578.1 mRNA upstream 1391 15101981 ~ 15106148 (-) False LOC120574279
XM_039824570.1 mRNA upstream 6167 15106757 ~ 15139718 (-) False LOC120574278
XM_039824572.1 mRNA upstream 6167 15106757 ~ 15136433 (-) False LOC120574278
unassigned_transcript_853 other downstream 34619 15009798 ~ 15010340 (-) True LOC120573850
unassigned_transcript_852 other downstream 44815 14998773 ~ 15000144 (-) True LOC120574429
TU210040 other downstream 187402 14851939 ~ 14857557 (-) False LOC120575102
TU210041 other downstream 187402 14851939 ~ 14857557 (-) True LOC120575102
TU210042 other downstream 216739 14796026 ~ 14828220 (-) False LOC120574214
TU210305 other upstream 342574 15443164 ~ 15449503 (-) False metrnla
unassigned_transcript_854 other upstream 463543 15564133 ~ 15564204 (-) True trnae-cuc_25
XR_005641871.1 other upstream 617257 15717847 ~ 15724422 (-) False tecra
TU210508 other upstream 643085 15743675 ~ 15744117 (-) False LOC120574537
TU210507 other upstream 646727 15747317 ~ 15749430 (-) False LOC120574502

Expression Profile