RNA id: XM_039824965.1


Basic Information

Item Value
RNA id XM_039824965.1
length 4344
RNA type mRNA
GC content 0.48
exon number 14
gene id mrtfbb
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 17042448 ~ 17087280 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttcttcgCTGAGGCCAGCACAGAGCCAGAGAGGAGGGACTGTTTGCAGCTCTGAGAGCCAGCTGTTGTTCGCTCAGAACTAAGTCTATTCTCTCCCTGACTCCCTCGTTCTCTACAGGCCTCATCACTCCATGGGACTCCAGACCTGGCCGCCAAGCCAACCGCTCTCCTCTATGGCCTGCCTTGGTGTGGAGACCCCTTCCATCTGCAGGGGTAAATTCAAATCAgTCCTCCAGCTCTGTCTGCAGCAGAGGAGAACTCGGGAGCAGCTTGTGGAGCAAGGCATCATGCCGCCTCTGAAAACACCTGCTGCCTTTCATGAGCAGATTCGCAGCCTGGAGAGAGCCAGGACTGGGAGCTTTTTAAAGCACAAACTCTGCAGCAGACCTGAGCGCTCTGAGCTGGTCCGTATGCACATCCTACAAGAGACACAGGCTGAACCCTCCCTGCAGGCCACACAGATGAAGCTGAAGAGGGCCAGACTGGCTGATGATCTCAATGAGAAGATTGCCCAGCGGCCTGGACCCATGGAGCTAGTGGAGAAGAACATACTGCCTGTTGACTCTGGCGTCGAAGAAGACATAGATGATGTTGGCCCCACAGGTGGTGAGGCAAACTGCTCTAAGCCACCAGACATTTACAACTTTGATGAGGACAGCGGTGATGCCTTATCACCACAACAGCCTGCCAGCCAAAAATCTCCCCCCTCCACCTCTGCCTCTCCAAGGGAGTATGGAGGGACTGAGGCCACTTCTCCCATACAGCACTCCCCACCACCAAACTCACAGTCCACATCAGATGTAGTCAGCCTTGTATCCACCAGTGAGCAACAAAGCAACCAACAAGCATCTACAACTAAGCCAATCACCACCGGTGTCCCCAGTATCACACCGGGGCCACTTCTTGTGAAGCAAAGCCTGCCCAAGCTACCAGGCGATAAAAGCCGcagcaaaaaaagcaaagaaccCAAACCACGGGTGAAAAGGTTAAAGTACCATCAGTACATCCCCCCGGACCAGAAGCAGGAGCACAATGAAGTGCTAATGGACTCCGCTTACGCCCatctcctgcagcagcagcagcagttcctGCAGCTTCAGATCTTAaaccagcaacagcagcagtacAACTACCAGGCCGTCCTGCCTGCCACACTCAAACCAACAACTGAGGTACAAACCAGCTGTTCCACTGTTCTAAGTGGAAACACTGCGTCTACCCCTGTGCAGCCCCGCCACACTCAGACGAACCGCAAGCCGGATCATTTACCAGCTAATCTGGATGAGATGAAGGTTGCTGAGCTAAAAATGGAACTAAAACTCAGATCCTTGCCTGTTTCTGGGACTAAGACAGATCTGATAGAGAGGCTAAAGTTGTACCAGGAGAACTCTAGCATCCAGACTGCTACTGCCATTGAGACAACAGCCATCACAGCAGCCTCACAGtctgaaaacaaaaagttaTCCCCGCCTGTGTCCCCTATATCCTCCAAGGTGTCCCGTCTGGGCATAGAGGACAGTAGTATGGCAGACAGCCCGACCAAGCTTTCAAATGCTCTTTCTCCAACTCACACTGCTTCCTGTGTGAACTCCCCACAGAGAGCTCCACAGGAGAAGTGTCCCACAGAGACGAGGTCCTATGAGAAGGACTCTGAGAAGGACAAACGTCTCCACGAGAAGGAGCGTCAGattgaggagttgaagaggaaGCTGAAGCAGGAGCAGAGGctggtggaggagctgaagcTGCAGCTGGAGGTGGAGAAGAGGAGTCAGCAAGCAGATTCCCCGCCACAGCTCAGCCCTCTTGCTCCCATCCAGGTCAAAGAGGAAAACAGGACCTTATCAAACTGTTCAGCGTCTTGTGGTTCTCCTGGTGTGCCAGTGTTGGTCAAACAAGAGGATGTGGCAGATCAGAGCCACTTAGCTCCTCAAAATAAGTTCATCATCAGCCACCAGACTATTAAGCAGCCTGAAACCTTGCAGACAATCCCGGCTGGAGCTCAGATCCTACTGCCTGCATCCCGTCCTGCCTCAGCAGTCACTATCCAGCTCCCTGCCAACAGCATTAAATTACACACTACTGTTAGCAGCGCAGCCCCAGGCCTCATCCAGACCCCTGGACAGGTGCcacagaaaatagaggcctCAGCAGCAGTACAACAGCAATGCAGCACTCAGACTCAGCCACTgacaaagACTTGGAGGATGGGTAGTACAGCACAAAGCTTACTCCACACATGCCCAGTGAGTGGATGTCCTGTGAGAGCCTCCTCTAGCCAAAGTGTTCCTAAAGATCCTTCAATTAAGTCTCCCTGTACCAGCCAGCCAACTTTGAACTTGCCAAAATTCACAAATCATGTGTCAAAGTGTAAAGACCCACCCCGCTACGAGGATGCAGTTAAACAGACACGCAGCATGCTAACAGCTGTTCAGGGCCCCACTGCAGCTAGTCAGCAGATGGATGACTTGTTTGATGTGTTAATTGAGAGTGGTGAGATCTCACCCTTCATCAGACAGGATCCTCCTAGCCTGGACAAGCCTCTTCCTGTGACAGCCAGTGTCACCACCCTTCCCATCAACACAGTTTTATCCCGCCCTCCACCCGTGGTTCAAGTGGCCCAGCTGCCTGCAGCACATCTTAGCCCCTCAGCCAGCTTGGCAACCCTAACCACTGACACCCAGCTGGAAACCCTCCTGGATGGCAGGTTGGGTGCTCACAGCGAGCCACAAACACTGAAGCTGATGGAGGAGCTACACTCACCTGTGGTTACCATGGAGGTGGACTTTAATGAAAACACGTTGCCCTCTGCTTTGAGTTTGAACAGCACCAACGTGGACAATATGGATTGGCTGGACCTTACCCTGTCTGTGCCAGCAGAGGGGGTCAACCCTTTGGACATGTCAGCACCAGTGGGCGTCTTCTCCTCTGACTTCCTGGACTCACATGAACTGCACTTGAACTGGGACTGACTACCAAGGAGAATTCATACACCTATCACACAGTTTCAGATAAACttacttttttatgcaagaggGGATGGCTTTTGTGGGAAAATAAGGGCTTTTGGAGGTTGGATCAGCCCTGTTTTACTTTCTGGCCATATAAATCGGCTCAGTAATAATCTAATTGTGCTGCATCAGTTTAGAAGTCCATGCATTGCTTTTCCTTTTTCCATCTTTAAACCCTCTGATTGTACAGGGAGACTTACATAAAGTAGGACTGGTACTGGCAGATTGAGCTGACAGTGGAAGTAGCTTTTTAAATTTCAATCCAGTTATGTCACATATTTGTCATCAATCTGTTCTCATGTTATTGCTTTCTCTTTGTCCTCTGATCATAATGAATGTACAGTGTTATATTGACCATGGTAATAACCCAAAAAGCAAGAAAATGTCCCAATGCTGGTTAAAGAACTAATGGACAAACACGGCATGTAGCTGGTGGCTGTCATGTAGTTCACACCACCCTGTCTTGGAATGATTGTCACTATCAaaacagattgtaaacacacaaCTGCTAAACGTGCCCTGTGTATATGTAAACTGTGAAGCATAAATCAGACATTTAACTGAATTGAGAGTGtgtatatgataatataataagAGAACACTGAGTTATCATAGTGTAAAACCAGCCTGACTTTAAACTGTATTTACTGTACTACAAAATATTCAATATTGTTCTCAACCAGTTCTGACAATATTTCTAGCACTGTGCAGATCAGCCAAATCTTTAATCCGGCATCTCCAGTGTGCATCTGTACACTGTGTAAAACATACTGCACATGCTTTTGTAAGAATGCTGTGCTCcgtcaaaatgtttttaaattgttcttGGAACATCATTCAGTGACTCTTAGAGGGTTATATATTATTGAATTATACTTAGCTTGGTTTTTGTAACAGACATATACGTACACATCCTACAACGAATAACAACATCCATAAGTATGAACCACTGCTCATTTCATACTGAAATAACATTCATGCATTACAGTTTATTTGTACTGTAGTGACATCTGCTGGCCACATCCAAATCTAATCAGCCTGAGCAAGCAAAGTCTGTAGTCTGAtgtttgttatttgttttaGCAAAATATGatataaagaagaaaaaacttcAGTGTCAAAGAAaccactatacacaacatgatGCACCACAGCAGGATAGTTTCTGGACAGTGGGGTGGGTGTGTTTAAACATAAAggtctgttttattttgttgaattATTCGGGATTCACTGTCTGCCTCTGCAGGTTATCTGGAGCATTGCTGACAAACTCATCTGAATGTTGAGGAAAGTTTTGTAAAAAAGGACTTAAAAAGAAGACTggtcatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU211140 lncRNA downstream 4738 17037178 ~ 17037710 (-) True G155775
TU211137 lncRNA downstream 24669 17013704 ~ 17017779 (-) False mgrn1b
TU211120 lncRNA downstream 74365 16967793 ~ 16968083 (-) True G155759
TU211077 lncRNA downstream 131369 16910274 ~ 16911079 (-) True G155722
TU211033 lncRNA downstream 202161 16839035 ~ 16840287 (-) True G155697
TU211184 lncRNA upstream 60665 17117272 ~ 17117596 (-) True G155796
TU211187 lncRNA upstream 67583 17124190 ~ 17124481 (-) True G155799
TU211210 lncRNA upstream 80212 17136819 ~ 17137082 (-) True G155820
TU211218 lncRNA upstream 81903 17138510 ~ 17138824 (-) True G155825
TU211217 lncRNA upstream 89501 17146108 ~ 17148993 (-) False unkl
XM_039825115.1 mRNA downstream 7408 17032985 ~ 17035040 (-) True polr3k
XM_039825356.1 mRNA downstream 19240 17012411 ~ 17023208 (-) False mgrn1b
XM_039825357.1 mRNA downstream 19240 17012411 ~ 17023208 (-) True mgrn1b
XM_039823848.1 mRNA downstream 36904 17004147 ~ 17005544 (-) True aanat2
XM_039823705.1 mRNA downstream 78482 16961440 ~ 16963966 (-) True mpg
XM_039824492.1 mRNA upstream 89908 17146515 ~ 17162165 (-) False unkl
XM_039824490.1 mRNA upstream 89908 17146515 ~ 17162165 (-) False unkl
XM_039824491.1 mRNA upstream 89908 17146515 ~ 17162165 (-) False unkl
XM_039824489.1 mRNA upstream 89908 17146515 ~ 17162165 (-) True unkl
XM_039823771.1 mRNA upstream 108875 17165482 ~ 17173284 (-) False gper1
TU211128 other downstream 7430 17033049 ~ 17035018 (-) False polr3k
TU210878 other downstream 400317 16569446 ~ 16642131 (-) True G155583
TU210768 other downstream 783423 16230784 ~ 16259025 (-) False LOC120574432
TU210769 other downstream 797117 16230784 ~ 16245331 (-) False LOC120574432
TU210688 other downstream 886421 16154181 ~ 16156027 (-) False LOC120574545
TU211291 other upstream 358918 17415525 ~ 17415841 (-) True G155888
unassigned_transcript_855 other upstream 689979 17746586 ~ 17746657 (-) True trnat-cgu
TU211468 other upstream 963404 18020011 ~ 18022964 (-) False psmg3
XR_005642010.1 other upstream 1296154 18352761 ~ 18352844 (-) True LOC120575519
XR_005642009.1 other upstream 1296756 18353363 ~ 18353446 (-) True LOC120575518

Expression Profile