RNA id: XM_039825116.1


Basic Information

Item Value
RNA id XM_039825116.1
length 2429
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC120574725
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12080475 ~ 12083704 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACGATGCAAACCGGAAGTCATGTTGTGGCAGCTAGCGAATAGGTCTCCGttagattagctagctagcagttgAGTTTATCTTCTTGTTATCCAGCTAATTTACTatcgttttgtttttgtgacgTAGCTAACTCTCCGGAGACATGGACACCACACTGTTTCAGCTGAGGTCGTTTGTTCATCAGCGGCTGTACATAGCGGCAGAGGAGATCCTCGGAGAGGTGGAGAAAActataacgttagctttgtacgAAGCCGAAGTTAGTCAAACTAAACAGGAGGTTGGAAGTCTGCGACATCAGCTAACGAAAGACCTTCGAAAGAAATCAGCTGCAGAGCCTCCAATGACCAACAGCACAGTGGAACGGGGAGATGAATGTGATGCCCCGCTGCTGCAGGAGAACACTGGTCCCTCAACACCAGAAAAGTCCAACTTCAGTCTTGGTGCTGAGGTGCCGGGACCCTCTCAAATCAGTGCAGATCCGGACAATAATAACTGGAACTACTGCTTGGTTCAGACAGACTTCAAGATGTTAGAgataaaagaagaacaggaggaACTTGGGGATGACAGTCAAACACAAGAGATGGTTTTTCCTTCTCCCGAAATTGTGAAAAGCGAGCAAGATCAGCCAGAGACAGAACTATCATATGAATTGCAGCCAGTTTCTTCAGACTGCTCTGCAGCTCAGAGTGAGAACAATGACAGTGATGAGGAGTTGGTTACCAGCAAAGAAGAACAGACCATAACAatgaaaaggaaaggaaagatgTTGCATGGACAAAGTGGCAACGTTAATGAGAAGGCAGCATTGCCTCATGACAAAAGTTCTGCTAAAAGTGAAAAGGAACGCggtttttgccatttttgtgGGAAGGGATTTCAGTACATTGGCTCTTTGATGAAGCACATAAAAACGCATGAGAACAATTTTGATTGCACGGTTTGTGCGATGACATGCCAGTCAACAGAGCAGCTGATAACTCATCTGAAAAGTTTTcataacaaaacacatttttgtgacGTTTGTGGCAAGACTTTTGCCAATATCCGTCGTCTCCGGCTGCatgaaaaaatacacacaggcaTAAAAGAGTTTGTCTGTCAAGAATGTGGTAAGACATTTTACCGAAAAGAACATCTGATTGTGCATGTGAGAACCCATTCTGGGGAGAAACCTTATCACTGTGATATTTGTGGAAAATCATTCAGTCAGAGCCAGAACCTTACAATTCATAAAAGAAGTCATTCAGGGGAGAGACCGTATCAATGTGGCCTGTGTGGCAAACTTTTTAATACTAGCAGTCATCTCAAAACACACATGAGATACCATTCAGGAGAAAAGCCGTATTCATGTGATATTTGTGGTAAACATTTTCGCCAAAGCGGACAGATGACTAGACATAGGACCACACATACAGGAGAAAGGCCATATGGCTGCCATGTGTGTGGTATGAGATACAGGTTTGCACCTAATCTGAAGGTGCACCTTCAAATTCATGAAAAGGCAGCCTCTGAGTGAAAAAAGTTACATAACCAGACGGCCATCTCAGAGCTCAATGACAAATCATATGTATCGGTAAGTTGGATTTAGAGAGAGTAATTGAAAGAGCTACTTTACttatcagaaaaaaacacaatttaaattagggctggacccgaatattcgttcggtgggttggtattcgatttgaaaatttgacattcgaatatttgttttttttttgcacaacctGGCATCCCCCTCCAAACGGTTCTCATTCGCGCTTGAATATGTTCGAAATATAATACTctcttttacaattttcttaTATAGCCTAGCCATTTTAATAGGATGGACAACCCAACCTCATTatacttaataaatatatttgcttCTTCTTGGACTACTAAAGTGTTCCTGCAACGGGAGTATTCTCTGGCTAGAGCGCAGAACAGCGCAGTTTGCATGGACAGAAGTGCATGCCTGAGTTTGTATTTTGGCTTAAGCTGCGTTGCTTTGACattgtggaaaataaaataatagaaacaaaatgtattatcctTTTTAACCCGTTATCAATCTAAATTAATCTACTGCGAAATATAGGAGACTTTGAGATTTTACTGGGACGTCACGTCACATGCCCCAGTTAAAACGGCCATGAGTTGAACGTCATTACTGTCACGATTCAgcgaaaagaagacaaaaatgcCGAAGACTTCATCTGTGTGGGAGAACTTTAAATTAAGTTAGGACAAGACAAAGGCAAAGTGTCAAATATGCAAATCAAAAAACTTTGACCAGACCAGACTGCAGAGCAGCATCTCTGGAGCTGTGCTTTTTTCACAGttaatgtctgtttttttgtatgCTGTTTTGTGTAATTTGTTTTAATGGTAAAACCAAATTTCCACAtggggggacaataaagtttattaaACTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208997 lncRNA downstream 25271 12052806 ~ 12055204 (-) True G154248
TU208995 lncRNA downstream 57971 12022297 ~ 12022504 (-) True G154246
TU208994 lncRNA downstream 58285 12021527 ~ 12022190 (-) True G154245
TU208970 lncRNA downstream 67995 11969405 ~ 12012480 (-) True G154231
TU208913 lncRNA downstream 250292 11829944 ~ 11830183 (-) True G154187
TU209010 lncRNA upstream 2421 12085985 ~ 12090019 (-) True LOC120574419
TU209013 lncRNA upstream 3439 12087003 ~ 12090981 (-) False LOC120574419
TU209033 lncRNA upstream 47822 12131386 ~ 12155812 (-) True G154275
TU209066 lncRNA upstream 100047 12183611 ~ 12183825 (-) True G154305
XR_005641900.1 lncRNA upstream 277675 12361239 ~ 12373994 (-) True LOC120574757
XM_039823903.1 mRNA downstream 4658 12062780 ~ 12075817 (-) True LOC120573975
XM_039823910.1 mRNA downstream 22674 12055838 ~ 12057801 (-) True ndufb10
XM_039823904.1 mRNA downstream 31205 12028027 ~ 12049270 (-) True tbl3
XM_039824510.1 mRNA downstream 71939 11984719 ~ 12008536 (-) True LOC120574261
XM_039824677.1 mRNA upstream 3427 12086991 ~ 12089481 (-) False LOC120574419
XM_039825780.1 mRNA upstream 43903 12127467 ~ 12128598 (-) True fahd1
XM_039825748.1 mRNA upstream 54504 12138068 ~ 12142317 (-) True narfl
XM_039824945.1 mRNA upstream 102533 12186097 ~ 12213659 (-) False arhgap17b
XM_039824942.1 mRNA upstream 102533 12186097 ~ 12213659 (-) True arhgap17b
unassigned_transcript_847 other downstream 593550 11486854 ~ 11486925 (-) True trnaq-cug_14
TU208722 other downstream 854929 11203450 ~ 11225546 (-) True G154033
TU208632 other downstream 942993 11110968 ~ 11137482 (-) False tnrc6c1
XR_005641867.1 other downstream 999869 11078587 ~ 11080606 (-) False LOC120574486
XR_005641884.1 other upstream 343940 12427504 ~ 12565471 (-) False cep112
unassigned_transcript_848 other upstream 759329 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641885.1 other upstream 872958 12956522 ~ 12972810 (-) False iqck
TU209391 other upstream 889768 12973332 ~ 12979685 (-) False sun1
XR_005641817.1 other upstream 1251885 13335449 ~ 13421951 (-) False prkar1b

Expression Profile