RNA id: XM_039825168.1


Basic Information

Item Value
RNA id XM_039825168.1
length 2181
RNA type mRNA
GC content 0.44
exon number 9
gene id slc35b1
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 21465792 ~ 21472250 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCATGGACGCTACCatatcttttatatatgtcaatgtacCATAGATGGACGTTACCGCTTTTTTCTCTACTAATTATAGTCTTTAATTTCTAAATGAAAACACGAACTGCACTCGCCTGACAGGACATCTAACTTACAGAAACCCAGGTGGGAATGGGATGTTTTTGAATTTACAGCTGTCCTGGAGGAGAAATTTAGATACATCAGAAtgacacaaaacaaaccaatGAAATGATATTTGAGTGTCTGTGCAGCTCCAGACAATTCaaggtaacgttaccgttagcgAGCTTTGGCAATTAACAATTACTGTGCACAAGAAGGTTTGAAGGCAAAACCGCTACTACCACAGAAACACCTAGCTAACGTGAAAACACGAGCACCATATACCGGCTCGCCTCATCGTGGAGCGGGACGTCGGTGTGAGGGGCGCGGGGAGCGGAGCGGTGTCGGTTAACATACCCGGGCTGTTGGACGATAGCATGGCTGCGGGAAAGGGAGCTGGGAAGCCTGCCTCAATGTGGGACAACATGCGGATACGGTTCATCGTTTGCTTCCTCGGAGTCTTCGTGTGTTACTTTTACTACGGAATATTACAAGAGACCATCACACGAGGTGATTATGGACAGGGAGACCAACAGGAGAAGTTCAGATTTGCCCGGACATTGGTCCTTATCCAGTGCATTGTCAGTGCTCTGTTTGCTAAGATCTTGATCCAGTTTTTTGAGGGCTCCAAGCCAGATCACACCAAGAGCTGGCTCTATGGGTTGTGTTCCCTCTCTTATCTTGGAGCCATGGTGTCCAGTAACTCTGCCCTTCAGTATGTCAACTACCCCACACAGGTGTTGGGGAAATCCTGCAAGCCCATACCAGTGATGATCCTCGGTGTGACAATACTAAGGAAGAAGTACCCACTGGCAaagtatctgtgtgtgctgcTTATTGTGAGCGGTGTAGCGCTGTTCCTCTACAAGCCCAACAAGAGCTCAGCCGTTTCAGATGACCATGTTTTTGGGTTTGGAGAGATTCTGTTGCTGATCTCTCTGACTTTGGACGGTCTGACTGGTGTGGCCCAGGACCACATGAGGGCTCGCTTCCAGACAAGTGCCAACCACATGATGCTGAACATCAACATGTGGTCCACTCTGGTGCTGGGACTAGCGGTATTGTGGACAGGGGAGGTATGGGAGTTCCTAAGTTTTACTGAACGCCACCCGAGCATCATCTACAACATTCTTCTGTTTGGACTGACCAGTGCTTTAGGCCAGACCTTCATCTTCATGACGGTGGTGTATTTTGGCCCTCTGACCTGCTCCATCGTCACCACCACAAGGAAGTTCTTCACCATCCTTGGCTCCGTTATTCTGTTTGGCAACGTCATGAGTACGATGCAGTGGCTTGGCACCATCCTGGTGTTCCTTGGTCTCGGATTTGATGCTAAATTTGGCAAAGTACCTAAGAAGACGACGCACTAAAACATCTGGAGCACACGAGAGAAAGACCGAAACATTGCAAAAGGAAACACTCTATAgccagtattttattttcataagaCGTTCTGCACAGGCATACTGTATGTGCCTATGATTTGTTTAAGTATGGTCAGATTTTTAACTTAACTGTATTTAAAAGATAGTCCAGCTTCTGTTGTGTACTGTTGATATATCGAAGAGACACGTTTTACTTGGGATCAAGTCCTGAATGAACTTTGACCACAAGATACCACACTTTTGTGGGGGAATTTGGACTGGCTGAAAGACACAGGTGGAAAATACTGTATTTAGACAAATCTTATGTTTCTGAAACCAGCTCACCTCCCTTGGGTGGAAATTAAAACCAAACAAGGCATAAGGTATATGTTTTCCATCATTTAACTCATGAACTTGCCACCCAGTAAGGCTTGGTTTACAAATTGTTGCTTGAATATGTGTAATTATCACATGTAGTTTATTTCTTGGCAAACAATCAGCCAAGCATCATGCCATTTATAAAATATTAACTGTTGTATGTAGCctgttgtgttttgttcaaTCTTACTATTGAactgtttttacttttattttctacaAGTTGAAAATGACTTGCCATAAAAAGAGAAATTGTGATATTTCATGGTGATTTACTTATTATTAAACAGACTGAACTTGATTGGTTCACATCAGTCAGTTGAGATACTCTAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15275 SLC35B1; solute carrier family 35 (UDP-galactose transporter), member B1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU212732 lncRNA downstream 3112 21461520 ~ 21462680 (-) True G156985
TU212646 lncRNA downstream 85343 21347919 ~ 21380449 (-) False LOC120575154
TU212674 lncRNA downstream 139391 21326114 ~ 21326401 (-) True G156934
TU212672 lncRNA downstream 141297 21324237 ~ 21324495 (-) True G156932
XR_005641952.1 lncRNA downstream 212228 21170204 ~ 21253564 (-) True LOC120575152
TU212850 lncRNA upstream 162539 21634789 ~ 21635593 (-) True G157065
TU212860 lncRNA upstream 193200 21665450 ~ 21667398 (-) True G157075
TU212871 lncRNA upstream 222681 21694931 ~ 21698789 (-) True G157081
XR_005641861.1 lncRNA upstream 242764 21715014 ~ 21718729 (-) False LOC120574354
TU212879 lncRNA upstream 242795 21715045 ~ 21718696 (-) True LOC120574354
XM_039825169.1 mRNA downstream 715 21463207 ~ 21465077 (-) True ndufa4a
XM_039825804.1 mRNA downstream 73045 21333409 ~ 21392747 (-) True LOC120575154
XM_039826219.1 mRNA downstream 356999 21105958 ~ 21108793 (-) False selenow2a
XM_039825293.1 mRNA downstream 365825 21086540 ~ 21099967 (-) True slc4a1a
XM_039825300.1 mRNA downstream 380850 21074583 ~ 21084942 (-) False ubtf
XM_039825859.1 mRNA upstream 915 21473165 ~ 21481722 (-) False fam117aa
XM_039825860.1 mRNA upstream 915 21473165 ~ 21479847 (-) True fam117aa
XM_039824976.1 mRNA upstream 10695 21482945 ~ 21498768 (-) False rundc3aa
XM_039824975.1 mRNA upstream 10695 21482945 ~ 21497490 (-) True rundc3aa
XM_039824977.1 mRNA upstream 10695 21482945 ~ 21497488 (-) False rundc3aa
TU212733 other downstream 719 21463222 ~ 21465073 (-) False ndufa4a
TU212545 other downstream 394304 21069026 ~ 21071488 (-) False atxn7l3a
unassigned_transcript_860 other downstream 1294434 20171287 ~ 20171358 (-) True trnac-gca_27
unassigned_transcript_859 other downstream 1445504 20020217 ~ 20020288 (-) True trnac-gca_26
TU212205 other downstream 1517902 19945588 ~ 19947890 (-) False si:busm1-163l24.3
unassigned_transcript_864 other upstream 132115 21604365 ~ 21604436 (-) True trnac-gca_31
TU212812 other upstream 148780 21621030 ~ 21622961 (-) True G157034
TU212878 other upstream 242795 21715045 ~ 21718696 (-) False LOC120574354
TU212889 other upstream 262132 21734382 ~ 21740703 (-) True G157096
TU212895 other upstream 282516 21754766 ~ 21756188 (-) False LOC120575106

Expression Profile