RNA id: XM_039825196.1


Basic Information

Item Value
RNA id XM_039825196.1
length 6519
RNA type mRNA
GC content 0.52
exon number 19
gene id LOC120574761
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6980322 ~ 7005702 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCAGCATCGGATGGTGCATGCACTGTGCTGACGAGCCGTTGCTTGTGGAAACAGCTGGTGGTTTCTGTCAGCGAACACTTCGGCTTGAGAGCGGCATTAGTAGAATTAAAAGTTCAAATTAGACTTGAAACTGACTGAGCGCGCTTTGATTTTGACCCTCTGCTGCTGTCCCGTCAGACGCCGGGAAATGTCATCCTGTAAACGCCACTTTATCGGGGAGTTGTTAATTAACAACCTAGCTTGTTAACTGCAGTTCAGTGACGCTCGACGCAGCCGGCGGCTAacgccagctagctagctaactttgtACTGCCATAGCAACTACCACGATACAGGTGTTCTGTCATCGCAGGCGAACCTGCCTGTTTTCTGACAGTGGAGGGCGAGGTTTTTGTTTCGTTTCAGCATGACTCATATTCATTATAAATTCTCCTCCAAACTCAGCTACGACACTGTGGTTTTTGACGGCCCGCACGTCACCCTGAGGGATCTGAAGAGGCAGATCATGGGCAGGGAGAAGCTCCGAGCCGGGGACTGCGACCTGCAGATCACAAACGCCCAGAACAAAGAAGagTACACAGATGATGAGAGTTCGATCCCCAAAGGCTCCTCCGTCATCGTCAGGAGAATCCCAATCATTGGAGGAAAGTCCGGCAGCAGCAAGACCCGCAAcgttgaGCGATCGGATGTCCAGCACCACGCCTTTGGAGCCTACAAAGCAATGGATGACCAGAATTCTTCCAGAGCCGTACCCTTTTTCTCCAAgATGCAGAACCTGGCTGATGTCGATGCGTCAGAAGAGGATAAGATTAAAGTTATGATGAATCAGTCAACCTACGACTCCATGAATTACAACAAGAAGTTTGGTACTGCACTTCCTGCGAACTACACCTGCTATCGCTGTGGAAATACTGGACACCACATCAGGAACTGTCCCACCAGCGGGGATAAAATCTCAGAGGCCCctctgaaaataaagaaaagcacAGGCATCCCTCGTTCCTTCATGGTAGAGGTGGACGATCCAAACATAAAGGGAGCCATGCTGACCAACTCTGGACGCTACGCGATTCCTACCATAGACGCTGAGGCGTACGCTATTGGCAAGAAGGAGAGGCCTCCATTCGGTCCACAGGAGGAGACTAAGTCAGAAGGCGAGGAGGACCCTGTACCTGAGGAACTCCTCTGTCTGATCTGCCATGACCTGCTGAGTGATGCTGTGGTCATACCCTGCTGTGGAAACAGCTACTGTGATGACTGTATTCGCACTGCCTTACTGGATTCAGAGGAACACGTCTGCCCCacttgcagccaatcagatgtcTCACCCGATACCCTGATAGCCAATAAATTTCTCCGACAGGCTGTGGACAATTTTAAGAAAGAGCGTGGCTTCACTAAAAGTCTGAGAAAAGGGTGTGGTACCTCCCAATCCCAAAATCCAACCCCGACACCGAGCCCTgtccccacccctccccctctcGCTGTGCTGAGCCAACCTCAGAAGCCTCACCTGCCAACCCACAGCCAGCAGGACCCTCTCCGCTCGCAGGCTGCAGACACACCGCCATCGTCTCAGGTGTGTGGGGCTCCGCCCACAGCTACAGGCCCCGCCTCTGCTCCCAACACGCCAAGCACTTCCCTCCAGCCTGCGCAAAGCCACCTGGAGATACCTGACAAAGAGGCTGAAGAAAAGACACACGATGACTCAGCAGCTGCTGCCGCCCCGTCTGTGCCGGTTTCACCAGAAGAACCCACTGATGCGCCATCGCAGCTGATACCAATGGTTATCCCTACTCCAGTGGCAGAGCAGCCCCAGACAGTCAGTGTGAATCTACAGCAGCCCTCCTCAGGTCCAGCCCCGAGACCCTACGGGCCGTCACCGTCCTGGGATAGCCCCTCTTCCTCCTCGGGTTGTCCTATTGGAGGCTGGAATGAGTCTAAAACCCAGcagctccctccctcctcctcttcatatCCAGCaactcctccacctcctctctttccctcccccaATTTCCACACATTCCTCGCCGCTCATCAGCCTCTCAGCGGTTACCCCCCTGGATACCCACCCCCCGCGCCCGTCTGGACACTCCCAAACCTCCAGGGTGCCCCCATCCCTTCCCTGTGCCCCTCTACCTCCATCCCTGCCCTCATCCCCAAGGAGTGGTACAGGCatcagaggaagaagaaggaaagGTCACCTCACCGAGGATCTTCCCACAGACGCTCTTCCTCTCGTTCTTATTCAAAGTCTTCCAAGTCCAAGTCTTCTCGCTCGTACTCTCGTTCTTCCAGCAGATCCAGATCCCGGTCCAGGTCCCAAAGCAGATCAAGgcCCCAATCTCCTTACTCTCGCGAAAGAGACCTCCAAACCCGCTCTCATTCCTCCCACTCCTATAGCTATGGTTACAAACGTTCCCCTACACCGTCCTCGTCATCTTCACCTCGAGTGGGTTACCGTGCCAGGTCCAAGTCACCGTCAGGTCACCGCAAAAACAGCCATCATAGTCGGCATCACAGTAAGAAATCCGCTTCGAGCAGCTACAACTCCAGGAGGCAAGGAGAACAGTCCCAGAGGGAAGCGGGGGGCTCGGGGGGAAGTTACCTGTATGCCCAGCACGCAGATCAAAGTAGCAGCCTGGACCTGAACACAAAGCGCTACCTGCAGTGGAAAAGGGAGTACAAAGAGTGGTATGATAAATATTTCCCCAGCTATGTCGGACACTTCCAGCTGCCTCTTCCCCTCCTcaatcttcctcctcctcctcctcctcagtggGGGGGCCAAGAAGGAAGCGGAAATCCCTCGCACGCCAGCTCCCGCGACCGATTCCAAGGTAGACGCGGCGCGCGGATGGACGGCTGCTCCCCTCCATCGCAGTCATCCAGTGACAGCCGCTCCCCTCCATCCCAGTCTTCACGTGACAGCCGCTCCACGCCATCTCGGTCCTCCAGTGACAGCCGCTCCTCTCCGTCGCACTCGTCCAACGACAGCCGGTCCCCTGCCTCTCGGTCGTCCAGCGACGGACGCTCCACGCCGTCCGAAGATGGAGCTCCGCCGACGGCATACCAGCAGAGGTGCGCTGAGAAGTCCAGCCGCCTGCCAATCGCACTTACAAAGGGCGGTAAGGAAGCGAAACCGCAAGAAAGAAGTGAGGACGATAAGCCGCTGATGGCGAAGAATTTGGAGAACCTCAGCACCTTAAAACAtgaggaaggaagaggaggggagTCATCATCCCCTAATACCGCAGGCTCAACGGATGAcagcagaaagaacaagaggAGACCCAACACTGGACCAAATGTCTGCAAGGATGGCACCCCAGCACGGGACCAAGCAACTGGCAGCGATGCCTTAGAACCAGTCCAATCACTCGTGAAACCAGGTAAACGTTTGGATAAAGACTACGAAAGAAAAAGCAGAGAACAGAGGAATTTGGAAATCGAGAAAGGATGGAGAAGAGGCAAACATTCAGACTCCCGGCAGGATGTGGGGAGACGGCACAAAGAAAGGCCCAGTAAAGAGGCAAGCAGGGCGGAtccagacagacacagataccCTGGAGGCAGCAGGGATTATGACTCGAGATCAGAGaagaatagaaaaagaaaaggagaggacatTGGGAGAAGCTCCGTAAAGGCTCAAAGCAGCAAATGCCTGAAAACTAAAGTTGCAGAGGACCCCAAAACCCGCAAGAGCGAATCCCCGAATCCGTTTGAGAGAACCAAGCCGAAAACGGAgaagaaaaaggagaagaaaacatgtcctctgacagagagagaaatctgGGAGGGAGGAATAAAGGTGAAACCACAGAAGAAGATAAGCATCAACATAAACCTGGAAGGAGCGAGGAAGGACGGGAAAACTGAGAAACGGGACATGTCTCATTCAGAGAGCGTCACAGGAAGATCAAAGGAAGAAATGGAGAAGGCTGGtaatggagaggaggagaagttaAATGGAGGAGAGACGATGAAAGCAAATGAAAAGAATGAATCCAGCAGAGACGTGGAAGGTTTGTCTGAGGAAAAAATCCAACCAGGTGAAGGAGAGGCAAGACAGAAATGGGAGAAAGCTACCTTCAGAGATGAGATGGGAGAGATGTTGGAGAAAATTGCAGGAGAGAAACAAGATGtgggagagaagaaagaggaccgAGAAAAGGAAGACTTTGACTTATGGCCCAGCCCCCTTAGAGGAGTGGcggaggaaaaggagaggaaggaaggacaaGCAATGGGAGAGTTATTCGCAGGTACCCGGAAGGAGAGGGCAGAGGGAGAAAGCACATGCCAGGAAAACAGAGGAATCCCGCCGGGGGAGTCAAAGCCAAAGGAGGAGCTGATAAAGGGAGTGAAGTGGAGGATGAGGaaagacgaagaagaagaagaagacaaccACGACAACACAATGAGGTCCAAGTCACAAAGGGGCAGAAACGAGAGCCACCATGACACACCAAACACCGCGGTGCACGATGGCAGCAGCTACGAGGATCATCAGAAAGGGAACACATGGTTGGAAACTCTGGAAGAGTACACCCAGGACAGAGCTGCAGACCTAGAGGACGAGCTCAAACTCCTACAGGTCCCTCGCCCCAAATGGGAGAAGGAAGAgtctgaggaggaggagcggGTTGAAGGAGTGAGCAAAGTTCAAACAGATGCACTTGCCACGTTTCTGCCTTCGCCGTCCGTGTCCGTGACGACCGAGACGACAACCAACAGGGATGCAGAGAATGAAGAGAAGCgagagaggtcagaggagacggagagagaggaggCCAGCGCCATGGAGAGAAGTAGGGAcagggagagagcgagagagaaatcCCCCGTTCTGTCCAGTTCACAGAGAAGTGTGGCTCCCTCTAGTGGCAAAGACGGAACTGACAGCGCCTTGTGCACAGACCGAGACGGGGAGAAaaggatggagatggagagacagagggacagagagagagggagggagagcgagaggcagaaagagagcAAAAGATCAAAAGAGAGAGCAAGGGAGGAAGAGAatgggagagacagaaagagagagagggggcacAGCAGCATTGCCTCCGCCCAAAAGAGGaaccctccctcctcttctcacTCCTACTCTTATTCGACACAGAGACAtgacacagagaggagagacaggcagagaggggGCGACACGGACGGCAACAAGAGTTCCTCCTGTCCCGGCAGGAAATTCTCCGGTGGCAGAAGCAGGGAAAGCAGCGCGATGAGCAGAGCTGCCGAACTGCTTGGTCAAAATACCCACAGATCATACAGAGACACGCCACTGGATTCGAAATTTAAAGACAAAGACCATCCCCACTGCTGCCACAATCCCCAAGATCCATCAGGGAACAACAGACCTGCAGGGACCCACCACTCCCCACCTTCCCTCTCTCACAGCCGGGGTAAGGAGAGAGACCCACTCTCCTCCGGGGCGGAGCTGGGTAAGCCCAGAATGAGCAGCCCTGGTCAGGAGTTCATGCAGAGCAGAAGTAGAAATGAGAGCAGGGTTGAAAAGGAGGAGTGGAAGCAAAGGAAGGCAACTAAAGGcataggagagagagaaagtcaaGAGATGGTGtctgagagagaaggaggtagTCGATGCAAGGATGAAGCCGACGAGTTGGACGGACAGACCaagtgggagggagggagagagctgGAGGAAGGGGAGAGGCCCAGCAGCCGCAGCAACAGCGTCAGTTCATCAGCAAGCCAGGAGAACAGCAGGGACGGCGAAAGAAAAGAGAATAAGAACCAAAAGAAGCGCCAAAAGGAGAAGAGACGATCCTCCCCAGAGCTGCTGGAGGAAGGGGAGctgaagaaacacaaacacaagaagaaGATGTCACAGAAAAGCAGAGACGGGGGGGAAGAAGAGAGTAGCGCACGCTAAGCTCTGCTCAGTTATGTTATGTTGACtctcagagaaaagaaaatgaaatttaCTTGAATgatgtttttcctttctctgtccaaaaagtgcctggattttctttttcttttctttttttcaacttgATTTAGTTTTGCCAGGATACTTTTTTGTATCACCTTGAGATATGTCCTATCAAATATGCATCATCCAAACTGAAAGTGAACAAAATGTGAAGGAAAAGCACTTTATACTATAGATAAGAAAATGAATGTGAATGAAAGCAAATGTTAAACCTAGGACCTCTTGAATTATTTAGAGTTCAAGGAATTTGCACATGCTCTCAACTTGCTCAGGACTGCCACCAACCATGGTTTCTATACTGAACCTGTGATGTTACAGCTTGCATGGAGGatatcttttattttgacaagAGGCCAGTCAGTAATTTGATTTGCCTAACACAGAAGCACAGGAGTGCATATAGAGGATTATTAAAAAGAGTGTATGATTAATTTGAAACATACTGTGAATATTTATGATTTGAACctctgtgttgtattttattttgtaatgtttaattaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K15541 MPE1; protein MPE1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206823 lncRNA downstream 206610 6772880 ~ 6773713 (-) False arhgdig
TU206694 lncRNA downstream 223238 6756791 ~ 6757085 (-) True G152577
XR_005641813.1 lncRNA downstream 269124 6709402 ~ 6711199 (-) True LOC120574035
TU206674 lncRNA downstream 381447 6597999 ~ 6598876 (-) True G152560
TU206672 lncRNA downstream 382480 6597354 ~ 6597843 (-) True G152559
TU206870 lncRNA upstream 7545 7013247 ~ 7013685 (-) True G152720
TU206859 lncRNA upstream 15767 7021469 ~ 7038559 (-) True G152712
TU206881 lncRNA upstream 194985 7200687 ~ 7200912 (-) True G152730
TU206880 lncRNA upstream 198612 7204314 ~ 7206094 (-) True G152729
TU206894 lncRNA upstream 325108 7330810 ~ 7356838 (-) True G152738
XM_039826087.1 mRNA downstream 22698 6919941 ~ 6957625 (-) False LOC120575358
XM_039826089.1 mRNA downstream 22724 6919941 ~ 6957599 (-) False LOC120575358
XM_039826085.1 mRNA downstream 22724 6919941 ~ 6957599 (-) False LOC120575358
XM_039826090.1 mRNA downstream 22724 6921259 ~ 6957599 (-) False LOC120575358
XM_039826088.1 mRNA downstream 22724 6921259 ~ 6957599 (-) False LOC120575358
XM_039825564.1 mRNA upstream 17008 7022710 ~ 7054549 (-) True cacng3b
XM_039824382.1 mRNA upstream 57154 7062856 ~ 7171440 (-) False LOC120574177
XM_039824381.1 mRNA upstream 70508 7076210 ~ 7171440 (-) True LOC120574177
XM_039824618.1 mRNA upstream 208646 7214348 ~ 7270791 (-) False clec16a
XM_039824615.1 mRNA upstream 208646 7214348 ~ 7270791 (-) True clec16a
TU206683 other downstream 259680 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 752209 6182408 ~ 6228114 (-) True G152441
TU206279 other downstream 1366655 5574680 ~ 5613668 (-) False atp5mf
XR_005641918.1 other upstream 1076436 8082138 ~ 8100398 (-) False LOC120574885
TU207167 other upstream 1435477 8441179 ~ 8444381 (-) True G152952
TU207482 other upstream 1725695 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 1806640 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 1848058 8853760 ~ 8856957 (-) True tufm

Expression Profile