RNA id: XM_039825215.1


Basic Information

Item Value
RNA id XM_039825215.1
length 4569
RNA type mRNA
GC content 0.49
exon number 6
gene id cbx7a
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5533856 ~ 5541201 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAATAACAACAGAGAGACAGTTTACGACTTGTTTGGAGCTTGTGGAGCAGCGCGCGGAGATGGAGCTGTCATCAATAGGAGACCAAGTGTTTGCTGTTGAGTCAATAACAaaaaagagagtgagaaaggGTAATGTGGAGTACCTACTGAAATGGCAAGGATGGTCACCAAAGTACAGTACTTGGGAACCAGAGGAAAATATTTTGGACCCGCGTCTGGTCCTGGCCTACGAAGAGAAtCAGGAGAAGATCAGAGCTCTGGCCTATCGCAGGAAAGGTCTCAGACCCAGGAGGCTCGTCCTGCGGAATATCTTTGCCATGGACCTCCGCAGTGCCAACAAGGCCTTGGAGAAGCCCCCCCCTCGATTGCGTCTCTCCCTCACGCGCTCCATGAGCACAGATGTGGACCAGGGCGAGCAGAGCAGCCTGTACCGTGGCCTAGCCAGGAGGAAGAGCAAGCAGAGGGTGTCCAAACGGGGGCCAGCGGGACCCTCAAACAAAACCACCTTCCCactggagaagatggaggagcCCATTGAAGAGGACTGGGGCGTCACCAGCGAAGAAGAGAAGCATGAGTCTGAAAGCATTACCGAAGAGAGAAGTCAGTCAGAGTGCGGCTCCCCACCCTTGCTTGAGCGACAGGACTTAGAGATGGACGTAGAGGAGAAGGTGGACGCCGACCTGACAGCGGTAGGCACAGAAACGTGGATTGACAGACCGGGCGGAGGGACATCTGAAACGAGACAGAACCAAACGTTTGCGTGCGACCAATCAAAAGACAGTGTCTCGGTGCCTGAGGCCATACCAGAAGATGTGGTTTCTGTGAGCGACAGGTCCGAGTGGGACTTAGGTGAGGAGAGCGTGGAGTCAGAAGGATTAGAGATTAGATTAGAGAGCAGTGTTTGTCAGAGCAGCAGCACGACCTCGGTGATAGTCAGCGTTCAGGGGAGCAGCAAGACGGCATGTGAGTGCTCCCCTACTGAGgcgaggaaggaggaagggagtgaCGACAGTTCGAGTTTTACCACGACGGCGCCGGGCGCTCAGACTGCGCCCGTTGCAGCAGAACTACCCGGGAACGTGATTTCTACAGACGTGACTATCAACTCTCTGACGGTGACTATTAAAGAAGCTGTTGTGGCTGAAGGCTTCTTTAAGGGCTATTGAATAATGAGAAAGAGATGACGAGAGATCAGAATAACCATAATCAGACTAGCCACTCATTTTATACAtgtaaatatatgtgtatattggGTGATTTCATCCATTTTAATCCGCTTATCCGGGGCTGGGTCGCGGGGCAGCATGCTGTAAGCAAGGTATTCCCTCAGACATCCCTCTGCCCAGCAACGTTTTCCAGCTCTTTCTGGGTAACCCCGTGGCGTTCCCAGGCAAAATGAGATATCTAATTTCTGCAGCGTGTTCTGGGTCTACCCCGGGGCCTTTTATCAGTTGGACGGGACTGGAAAACCTCTAATGGTGTGCTCACACCCAAATTCAAAACAAACTTTTCAAGTAGCGTGATTGCGATTGTGATCAACAAAGTCAATGCAAAGACGCAAATAGGTAGTCGCGAAAATCAAACAGGGTTCAGATACTCGTGCATAGCATAGCCCTGATCGTTCCAAAATCCATTCAGAAAACAGACCTGACAAAGCATAAATTCGGACTTTTTGGCATCGTGATCGATGGTAGTTATTTTTGGCGTACTTTTATCCCAATTATTGCAATTAACCACAGCTAAATCTGTACCTCAAGTAGCACTGGAAGCGGCGGTCATCCAGATGCACTTCCTGTGTGCCTCCGGATGATGTTATGAACCCAGACGCGATTTGGTTTTTCTGACGTATATCTGGGACTTCCACAATGGGTACAAAGCAGCAGAAGTGGTTATTTGGCCATGGTTGATGAGGGAAAGGAATGTTGTTGGTGCCAATAAacgcaaataaacacaaatgctCCCAATAAGATTGCAGTCAAACCCGTGCGATCAACGCAAGGTGAAAGTTCCCTTCGCGGTTGGTGTAAACAGAACATAACGGGAGGCCCCCAGGAGGCATCCTGATCAGATGACCCAACCAACTCAACTCGACCATTTAGAAGCAGCAGCTGCTCTACTCCAAGTTACCTCCGGATGTCTGGGCTCCTCACCCTACCATAGAAGCTGAGCCCAGCCACCCTACGGAGGAAACTCATTTCGGCTGCTTGTATCTGGGATGTCATTTTTTCCGTCACTACCCAAAGCTCATGACCAGGGCCACAGGGAGTTCCcgcagattttaaacaaatgaaaaaaataaataaaataaaactctgaatgttaacacatctccacccCAAGCAGAAAGACAGTCCGCTAAACTccgcagattttcattctggatcaacgataaaaactgtaaaaaaaaaaacatccgcaGATTCCGTTTGGGTCTGCTcatcatgaccataggtgagggtccAAACGTAGATGGACTGGTAACGCTCGCATCGCTGCTGACGCCGCATCAAACCCGCCTGTCCATCTTTCACTCCATTTTACCTTCACTCGTGAACAAGAGATACTTGAACTTCTTCGCTTGGGGCAGTAACTCACTCCCAACCCAAAGGGAGCAATCCATCGTTTTCCGGCAGAGCACCACGGCCTCAGACATTTACTGActctcatcccaaccgcttcacgcTCCCCTGCATAACGCCCCAGTGCATGCTGGAGGTCACGGTCTAATGAAGCCAACAGAatcacatcatctgcaaaggaTAAGTCTTCCCCCCCAATTCTTCAAACTCTGCCTCCTCCACAGAGGATGTGTTAGTCGggttcaggagttcctcaaagtgctcttTTCACTGCTCGACAATATCTCCAGTTCGGGTCCGCACTTCTCCTCCCCTGCTGAACACCGCCTTAGCCAAGCCCTGCTTTTCCTTCCTGAGTTGTTTAAAGGTTTGCTAGAACTTCCTTAAGGACAAGCAAAAGTCTTTCTCCATAGCCTTCCCGAACTTCTCCCCCACCCTGGTCTTAGCCCGTCTGGCCAACCGGCTGCTTCAGGAGACCCCTGGGCCAACCGAGCCGAAAGGCCTCCTTCTTTAGCTCAAAGGGTCATTAGGTTGCTGCCACGAACAGGCACTGACGAACTTCTGACCACAACTCCCTAGTATCCGCCGCCACAATGGAGGTTTTGGAACATGGCCCACTCAAATTCCCCTGTCCTCAACCTCCCCGGGATGCACAGAAAAATTCTTCCGGTGGCTGGAGTTGAAGACCTGGCATACAGGAGCCTTAGCCAGACATTCTCAGTTCATCCTCACTACACGTTTGGCCCAGACCCCAGCCCCCTGGTTCCAGAACCAGTGCAGATATATCTAGCCGATATCGCTCCACCTCCTGCACCAGCTCCGGTTCCTTCCCCCGCCAGAGAGGCGACGTTCCACGTCCCTATAGAGCCAGTCTGCGATGCCAGCGGTCAGAACGCCAAGGTTACCACCTTTGCCTGCCGCTCGGCTCACAATGCAGCCAACCCCAATGCCTATCCCTGCGAGTGGTTGGCCCACAGGGTGGCAGCTCCACGTTGTTCTGTCAAGATGTGCCTGACCGAGCCCCACAGGTCAAGACTCTATAGGTAATTCCACGTGTTTACAAAGCTACACTCGTTTCCTACTGAGTTCAAGAAGACATTGTTGCCTTTGAGTAATTAATGAGTGGTCATTTTATCATTGTGGCTCATGTATTAGGAGTGATAGGAAGCCCGAGGCCCCAAAAAAAATGTCCTCAAATCATCCATTGCAATCCAGAGGACTAAATGGATCTCCATGGCAGCTTTCCTTCCTGGGGTCACTGGGTTCTCTGAGAGGTGGCGACAGATGCTGAGACAACAAACGAAACAAACCACATTACTACTTCCATGCAGCTACTTTTTCCAGTCATCCTCCAGCCAGACACACTCAAATCTGTTCTTGGGGCCTGTTTCAGTCGCTCCTTTTTCTTGATAATAATGTTTTGTAAAGATATTGTTCTTTTTTCAGTATTTGCACAGTATTTAGTTACTGCATGCCCTGTCAGTGTGTGCCACACATGCACAAAGCCCTGTCCTGTGGTTTGTTAAGGTCTatttctgtcacacacacaaaaaaaataaaacaaagcaagaATTAATGCCTGCCGCTTAGATTCTAAGTTCTGCATTTCAAGGAGGCTGGATACACAAAAAGAAGTACACAgttgtgtttgttgtctgtctTACTGTCCTTTTACTTTTCAAGTATGAAATGCTACCTGGTTCTATTTTTGTATTACCAATTGTTAGTCTTCTCTTTTCACTAGCCTTTGTGCATTTCAAAAGAGGAGATATCAGTTTACATCACTGCTGTTCTGCCGTGTACAAATGGAAGCAAAATGTACGTTAGGTCCGGCTGTAGTGAGCTATTATTTATTGCATGTCACGTATATAAGCTAAACTAACTTATGTCACTTATGTGTCTTTCTCTGACAAAGATAAACTGTCAAACATGTCTTCTCTCTAaaaatggatttttattttgcatttccaATAAATATGTACTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206259 lncRNA downstream 24464 5508717 ~ 5509392 (-) True G152233
TU206076 lncRNA downstream 85799 5446503 ~ 5448057 (-) True G152107
TU206072 lncRNA downstream 138741 5390505 ~ 5395115 (-) True G152104
TU206047 lncRNA downstream 243495 5287858 ~ 5290361 (-) True G152081
TU206013 lncRNA downstream 363204 5170304 ~ 5170652 (-) True G152052
TU206282 lncRNA upstream 42178 5583379 ~ 5585169 (-) True G152249
TU206284 lncRNA upstream 42178 5583379 ~ 5587735 (-) False G152249
TU206281 lncRNA upstream 44035 5585236 ~ 5587735 (-) False G152249
TU206292 lncRNA upstream 60112 5601313 ~ 5606088 (-) True G152256
TU206310 lncRNA upstream 118885 5660086 ~ 5660898 (-) True G152270
XM_039824486.1 mRNA downstream 55189 5466251 ~ 5478667 (-) True st13
XM_039824487.1 mRNA downstream 55485 5466781 ~ 5478371 (-) False st13
XM_039826073.1 mRNA downstream 96493 5416137 ~ 5437363 (-) False LOC120575348
XM_039826072.1 mRNA downstream 96577 5416137 ~ 5437279 (-) False LOC120575348
XM_039826069.1 mRNA downstream 96705 5416137 ~ 5437151 (-) True LOC120575348
XM_039825595.1 mRNA upstream 8090 5549291 ~ 5567539 (-) True top3a
XM_039824832.1 mRNA upstream 39062 5580263 ~ 5582864 (-) True bud31
XM_039824952.1 mRNA upstream 69389 5610590 ~ 5613722 (-) True atp5mf
XM_039824640.1 mRNA upstream 120660 5661861 ~ 5717548 (-) False tnrc18
XM_039824636.1 mRNA upstream 120660 5661861 ~ 5717548 (-) False tnrc18
TU206084 other downstream 69438 5461846 ~ 5464418 (-) True G152114
TU206002 other downstream 306615 5178316 ~ 5227241 (-) False G152043
TU206003 other downstream 346815 5179064 ~ 5187041 (-) True G152043
TU206001 other downstream 350201 5179064 ~ 5183655 (-) False G152043
XR_005641995.1 other downstream 1068865 4418968 ~ 4464991 (-) False LOC120575466
TU206270 other upstream 8117 5549318 ~ 5554250 (-) False top3a
TU206279 other upstream 33479 5574680 ~ 5613668 (-) False atp5mf
TU206260 other upstream 39167 5580368 ~ 5582861 (-) False bud31
TU206278 other upstream 69355 5610556 ~ 5613668 (-) False atp5mf
TU206522 other upstream 641207 6182408 ~ 6228114 (-) True G152441

Expression Profile