RNA id: XM_039825224.1


Basic Information

Item Value
RNA id XM_039825224.1
length 3799
RNA type mRNA
GC content 0.59
exon number 20
gene id srebf2
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4871597 ~ 4897912 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGAATGACGTAATGAGCGTAAAACAAGATGGCGGCGACTTAAGCATCTATCGGTTTGAACTAGTTTATCGCCACAGAGGTCTGCCTCTCTTGAGGCTTTATAGTGTTCTCTCACGGTTGGTCCGGGAAAGAACAACCTTTTCGGTCAGATAAGGGGGTTGTAGGCGTTGCTGAACGCCACCGAATAGCCTTCGGGTGCTGTTTGTTTCCCCCCTTGCTAACCTCCGGTGACAGCCGGGGAGGCGAGGTGCTAACAGACAGGATGGATACCGGAGAGTACATCTCCACCATGGAGAACATGGACCCGACTTTAGCGGAATTAGGGGACGAATTCACCTTAGGAGACATCGACGAGATGCTGCAGTTTGTCAGCAACCAGGACTTCCCAGACTTGTTTGAAGATCAGATGACCACAGCGGGCTCTGTACAGAGTGGCGGCGCCAGCACCGCTCCCCAACCTGCCGTTCAAACCCCTCAAACTCCCCAAACTCCCAAGACACCAGCCCCTGTCGTCTACCAGAGCCCCACCGTTCTCCTCGCCCCCTCCCAGACACTGTCTCCCCAGTCTCTGCCCCTCACCCCTCCCCTCACTCCTGCACAGACCCCCTCCCCCACGACTGTCCTGCCAGTGCAGCAGCAGGTGACCCGCAGCCCTCCGCTCCTCCAGCCCCGGCCTCAGGTGGTCCAGCCCATCCAGCCTCAGCCCCAACAGACAGCCCAGTCCACCATCCAGATGCACGCCCAGGGGATCCCCATGCAGACCCAGAGCTTCCCGGTCCACACCCTGGTTCAGACCCACAGCCAGGCAGCCCTGCCCATCCAAACCCAGGCGGCCCAAACTGTGATGATTGCCTCCAACGGCGGACAGTCGCGTTTCATCCAGAGCCCTGTCATCTGCCACCAGAGCCACGCTCCTGGCTTCCAAGTCCTCCAACCGCAGATGCAGAGCATTATGACGTCACCACAGCTCCAACCAATGACCATACAGCACCAGCGTGTTCTGACCCCAACCTGTCAGACCATCCAGACTCTCTCAGCGCCCACCACAGTCCACACTATGCAACAACAGATGCAGCAAGTGCCTGTTCTGGTCCAGCAGCCTCAGATTCTGAAGACAGATTCACTGGTTCTTACAACGCTCAAACCAGACGGCACGCAAGTCCTGTCTACCATGCAGAGCCCCGCAGGGATCACCACCTTGACTACGCCCATCCAGAACACAGCTCTGCAAGTCCCGACGCTGATGAGCGGCAACATCCTGACCACCGTCCCTGTTATGATGGGAGGAGGAGACAAGCTGCCAATCAAGCAGCTACAGCCGggctcctctcactgctcaaACGGAGCCAGATCAAGCATGGAGCAAGGCCAGATGATGGGAGGAATGGTAGGCCCGGGGGGAGTGGTGAAGGAGGGCGAGAGGAGGACGACTCACAACATCATTGAGAAGAGGTATCGGTCCTCCATCAACGACAAGATCGTGGAGCTCAGAGACCTCGTCATGGGCAATGACGCCAAGataCACAAGTCAGGAGTGCTGAGGAAGGCCATTGACTACATCAAGTACCTGCAACAGGTCAACCACAAACTACGGCAGGAAAACATGGCCCTTAAGATGGGCAACCAGAAGAACAaGACAGTGATTCTGTCTGAAGACGTGGAGCTTAAAGAGGAAATAGTGATGATGTCACCTCCAGCCTCGGACTCTGGTTCTGGTTCCCCTCAGCAGTTCTCTCCTTACTGTGTGGACTCCGAGCCAGGCAGCCCCTTGATGGATCACGATCAGATGAAGAGTGAGCCAGATTCTCCCTCCTCGGTTGGAGTGATGGATGGTTCTCGACTGCTTCTCTGCGCCCTGACTTTCTTCTGCCTGTCCCTAAACCCTCTGCCATCTTTGTTGGGCTCTGAGGCCTCAGCGAGCCCTGGTCTCGCTGTGGGCCACGGGCCAAGTAGAACGCTCGTCTGGTTCCCAACTCACGCGCAGGACTTTGCATCCTGGCTGCGGTGGCTGTTGCCGTGGGTGATGGTGTGGGTGCTGAGCGGTGTGGGAGCGGTGTGGGGCTGTGTCAGGGTGCTCTACCTGTGGGAGCCTGTCACACCCCTTCACTCGCCAAAATCGGTGTCCTTCTGGAGGCATCGCAAACAAGCCGACCTGCATCTCAAAAGGGGAGATTACACGGCAGCAATGGCCAGTTTAGAAACCTGCCTGTCCGTCTTGACCAGAGCTCTTCCCTCAACCAGTCTGGAACTGGTCTGCTCTCTGTCCTGGAATCTGATTCGCTACGTCTTGCATCGTCCAACTCCTCTGGGTTGGCTGGTTCGTCAGGTTGGGGGAAAGCATGAGGGGGAGGAGGCTAGGACTAGTGCGAAGGACGCTGCGCTGGTTTACCACCGGCTGAGCCAGCTGCATCTCACAGAAAAGCTGCCTCAGCGCAGCAGCCTGTGGGCGTTGTCTGTGTCTCTGAGCGCTGTCAACCTCAGCGAGAGCGCCCGAAGCAAGATGGCCCCTGCCCAGCTCACCCAGATCTACGTCACCGCAGCAACAGCCCTGCGCATTCTGCTAGGCCACCACCTCTCCTGTCTGCCTGGTTATCTGTTGAGTTGTGCAGAGAGCGTGGCCAACCAATCGGAGACCAAGCCGATCCCCGACTGCCTGCGCTGGCTCTTCACCCCATTGGGTAGGCAGTTCTTCCTGAGTTGCGATTGGTCGTTGAAGTCAGAGAGCAGCGATGGGGTGTACACTTCTCAGAGAGACCCAGCTGACCCCATTGCCCAGCTGCACCGCTGTTTCTGCAGGAAGCTTTTGGAGAGAGCCGTTCACACCCTCATCCAGCCACAGAGCGACTCTGAAGCTGGCAAACGCAAGAACGCCTCTGGggAGTTTTCCAGTGCCCTGGAGTTCCTCCAGTTGTTGAACAGCTGTACAGAGGACTCTCCTTCCCCTCCTCCTGCCTTCTCAACTCCTCCCAGTCACACCACCACCCCAGTGGGAGACCCAGTGAGTCGTTGGTGGGCTCTGGTCCTGAAGGCTGCCGTGCATTGGCTGCAGGGCGATGATGTCGCAGTGAGGTCACTGTTGGCAGAGGCAGAGCGGATGCCGAGGGCTCTGCACACTCTTGACCACCCTCTGCCCAAGGCTGTGCTGCATCTTTGCAAGGCAGTTCAGATGAGTCTGTCCCCTCTGAAGGGAGAAGGGGCGGTAGCCTGCCTGTCCCACAGCGACAGAGCCAGCAGCTACCTGCGCTCCAGCATCTCGGTGCCCGTCGCCCAGACTGGGAACTGGCTGAACAAGGGGGTAGAGCTCCTGATCTGTGACCTTCTGCTGACGTTGAGGACCAGTTTATGGCAGCGGGGAGGCAGCAGTAACGGAGAGCCTGGCCCGGCTCCTGGATCCCAGTTGGCTGGTTTCCAGAGGGACCTCAGCGCGCTCAGAAAGCTCACACAGTGCTACAGACAGGCGCAGCACAAGGTGTTTCTCCATGAGACCACAGTGAGGCTGATGGCCGGAGCCAGTCCCACAAGGACACACCAGCTGCTGGAGCACAACCTCCGACGCAGGACACACAACTCTTACACGGCCGAAGGTGAGTGTGTCCTGGGTGAGAGGGAGAGGGCTCATGCCATCCTCCTGGCCTGCCGCCACCTGCCCATGCCCCTGCTAACCCCGCCCGGGCATCGCACTCGCCTGCTGGCCGAGGCCAAGCGCACCCTGGAGCGGGTGGGAGACCGTCGGTCCCTGCAGGACTGTCAGCAGATCCTGCTGCGCCTCAGCGGGGGCACGACCATCGCGGcctcctga

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205683 lncRNA downstream 107499 4761732 ~ 4765493 (-) False LOC120574081
TU205665 lncRNA downstream 288832 4583204 ~ 4584160 (-) True G151799
TU205653 lncRNA downstream 349418 4521833 ~ 4523574 (-) True G151790
TU205652 lncRNA downstream 350568 4518781 ~ 4522424 (-) False G151790
TU205645 lncRNA downstream 394113 4477384 ~ 4478879 (-) True G151785
TU205857 lncRNA upstream 115606 5013517 ~ 5024092 (-) True G151951
TU206013 lncRNA upstream 272393 5170304 ~ 5170652 (-) True G152052
TU206047 lncRNA upstream 389947 5287858 ~ 5290361 (-) True G152081
TU206072 lncRNA upstream 492594 5390505 ~ 5395115 (-) True G152104
TU206076 lncRNA upstream 548592 5446503 ~ 5448057 (-) True G152107
XM_039823707.1 mRNA downstream 6410 4861415 ~ 4866582 (-) True nol12
XM_039824605.1 mRNA downstream 12903 4855277 ~ 4860089 (-) True LOC120574312
XM_039825485.1 mRNA downstream 17392 4831333 ~ 4855600 (-) False triobpb
XM_039824384.1 mRNA upstream 1715 4899626 ~ 4903295 (-) True LOC120574180
XM_039824385.1 mRNA upstream 6202 4904113 ~ 4913556 (-) True LOC120574181
XM_039824383.1 mRNA upstream 16171 4914082 ~ 4972215 (-) True LOC120574178
XM_039825677.1 mRNA upstream 102415 5000326 ~ 5004464 (-) True kdelr3
XM_039825692.1 mRNA upstream 160257 5058168 ~ 5062273 (-) True polr2f
XR_005641996.1 other downstream 408001 4418726 ~ 4464991 (-) False LOC120575466
XR_005641995.1 other downstream 408001 4418968 ~ 4464991 (-) False LOC120575466
TU205631 other downstream 444691 4416177 ~ 4428301 (-) False LOC120575466
TU205621 other downstream 505659 4361848 ~ 4367333 (-) False LOC120575464
TU206002 other upstream 280405 5178316 ~ 5227241 (-) False G152043
TU206001 other upstream 281153 5179064 ~ 5183655 (-) False G152043
TU206003 other upstream 281153 5179064 ~ 5187041 (-) True G152043
TU206084 other upstream 563935 5461846 ~ 5464418 (-) True G152114
TU206270 other upstream 651407 5549318 ~ 5554250 (-) False top3a

Expression Profile