RNA id: XM_039825337.1


Basic Information

Item Value
RNA id XM_039825337.1
length 2037
RNA type mRNA
GC content 0.52
exon number 11
gene id luc7l3
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 10608998 ~ 10618057 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagagaactacTGCCGGACTGGTTGAACGGTTGAACCATAAACGGGCGGCGTTGTTACACCGTCTGCCATTTTGAGTACAAGTATCTTGCGCGCAATAGATGGTGTCAACTGGCTCTTCAGGATATATAGTAGTTCTTTAAATCAAGGCTACAATCTTGTAGGCAAAATGCTCTCAGCAGCCCAGTTACTCGATGAGTTGATGGGCCGAGATAGAAATTTAGCCCCTGATGAGAAGCGATGCAACGTGCGATGGGACGACGAAAGCGTCTGTCGGTACTATCTGTGTGGCTTCTGcccagctgagctattcacaaaCACCCGCTCTGACTTGGGCCCTTGTGAGAAGATCCATGATGAAAATCTCAGAATAACGTATGAGAAAAGCTCTCGGTTCATGAAGGAGGGCTATGAGCGGGACTTCCTGCGCTATTTGCAGTCACTCCTGGCAGAGGTGGAACGGCGGATTCGTAGAGGGCATGCCCGACTTGCACTTTCCCAGGCTCAGCAGAATGCAGGGGGTCCTGGTCCGTCAGGAAAGAATGAGGAGAAGGTCCAGGTTCTAACCGAGAAGATTGAAGACCTAGTTTTACAGATTGAGGAGCTGGGGTCAGAGGGCAGAGTGGAGGAGGCCCAGGGAATGATGAAGCTGGTGGAGCAGctgaaggaggagagggagcTGCTGAGCTCCACCCCCTCGaccATCGAGAGCTTTGCGGCCCAGGAGAAACAGATGGaggtgtgtgaggtgtgtgggGCCTTCCTCATTGTGGGTGACGCACAGTCCCGAGTGGACGACCACTTGATGGGCAAGCAACACATGGGCTACGCCAAGATTAAATCCACTGTGGAGGAGCTCAAGGAGAAACTACGTCGTCGCTCAGAGGACCCTCAAGGTGAAAGCCCTGCGCTTAAGAAGGACCGAGAAGACCGTGAGCGTGAGAGGGAGGAAAGGGAGAAAAAGCgcaaagaggaggaagagaaggagaaggagagggagaaggagcgTGAAAAGGAGAGGGAACGAGAGAGGGAGCGGGAGCGCGAGAAGGAGAGAGACCGAGAACGGgatagagatagagacagagatcgagacagagacagggagcGGGACCGGAGGGCACGCCGAAGCAACTCCACCAGTCGCCACTCCAGTCGAGCATCGGacaggaagaggagcagatCCCGAGATCGCCGGAGGTCCAGGAGCAGAGACAAGGAAAGGGAGAGGGAACGCAAACGCAGCAGGAGCCGGGACAGGGACAGGGACAGGGAGAGGAAGCGCAGCCGTGAGCGCTCTGACAGAAAGCGTCGCTCCCGCAGTCGTGACAAGAGGAGGTCGCGCAGCTCAGAGCGCAAATCTCACCGCCATCGCAGCCGCAGCAAGGACAGggacagagaggagaagagagacaaGGACAGAGAGCGGTCATCGAAAGACAAAGACCGTAAGGTAACGGAGGAGAGGAGCAGCTCTAAGAAAGACAAACACTCTGACGGCGATGCAGCTGCCATCAAGGCTTCGTCAGAAGCGGAACCGATGGAGACAGAGGCGGCTGCCTCTGCCTCCCCTCTGCTTAACGGCCAGCAAGAGCTCCTCCATTCTGAAGGTGACACTCAGTCCAATTAAAACTGATCTGATAGGACCTCAGATCAGACTCAGGGGAAGCTGGGATATCTGGTGGAGGAAGAAGTGGAAGAGCGCACCCATCCTTTACCTGAACCTGACACGTCGCTGCTTAAAAACAAGGTGAACCACAAGTGTGTAGTGGCTTATTTAAAAACATGAACCTAACGTGTGTAAATGaggggagagggaaaaaaataaaattacattgaTTTCATGTTCCGTCACCTGTCTCTTTTGGCTGGATGAGGGTAGTTTGTGGTTCATCTGATGTATTTCTTGGTCTAGATGTGGGTCAGGCATCACTTTGAATACCAAACTTAAGAGAAGTTAATTATGGggttttatttagaaaatcttTACACATCCTTGTTTCTTGGCatttagtaaaaaataaaatgcaaaaaaaaaa

Function

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0005685 U1 snRNP cellular_component
GO:0003729 mRNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208277 lncRNA downstream 13991 10594743 ~ 10595007 (-) True G153734
TU208203 lncRNA downstream 314832 10286635 ~ 10294166 (-) True G153671
TU208192 lncRNA downstream 439559 10163444 ~ 10169439 (-) True G153663
TU208150 lncRNA downstream 570213 10034440 ~ 10038785 (-) True G153631
TU208147 lncRNA downstream 581299 10025317 ~ 10027699 (-) True G153630
TU208577 lncRNA upstream 287298 10905355 ~ 10907608 (-) True G153937
TU208598 lncRNA upstream 332514 10950571 ~ 10959521 (-) True G153950
TU208584 lncRNA upstream 415149 11033206 ~ 11035516 (-) True G153943
TU208656 lncRNA upstream 450986 11069043 ~ 11073776 (-) True G153987
TU208730 lncRNA upstream 653762 11271819 ~ 11272848 (-) True G154036
XM_039824227.1 mRNA downstream 218865 10352158 ~ 10390133 (-) True gtpbp1
XM_039825976.1 mRNA downstream 432987 10166712 ~ 10176011 (-) False gtf2f1
XM_039825973.1 mRNA downstream 432987 10166712 ~ 10176011 (-) True gtf2f1
XM_039825975.1 mRNA downstream 433041 10166712 ~ 10175957 (-) False gtf2f1
XM_039825974.1 mRNA downstream 433135 10166712 ~ 10175863 (-) False gtf2f1
XM_039825340.1 mRNA upstream 55285 10673342 ~ 10677290 (-) True LOC120574864
XM_039824400.1 mRNA upstream 120851 10738908 ~ 10772253 (-) False spag9a
XM_039824393.1 mRNA upstream 120851 10738908 ~ 10772253 (-) False spag9a
XM_039824401.1 mRNA upstream 120851 10738908 ~ 10772253 (-) False spag9a
XM_039824399.1 mRNA upstream 120851 10738908 ~ 10772253 (-) False spag9a
TU208212 other downstream 218822 10360812 ~ 10390176 (-) False gtpbp1
TU208206 other downstream 218878 10360801 ~ 10390120 (-) False gtpbp1
TU208205 other downstream 218878 10360812 ~ 10390120 (-) False gtpbp1
unassigned_transcript_828 other downstream 786005 9822145 ~ 9822993 (-) True LOC120574648
TU207919 other downstream 870511 9737970 ~ 9738487 (-) False LOC120574579
TU208443 other upstream 166055 10784112 ~ 10791539 (-) True LOC120574455
XR_005642003.1 other upstream 350049 10968106 ~ 10968174 (-) True LOC120575512
XR_005641868.1 other upstream 460530 11078587 ~ 11080606 (-) False LOC120574486
XR_005641867.1 other upstream 460530 11078587 ~ 11080606 (-) False LOC120574486
XR_005641866.1 other upstream 460619 11078676 ~ 11080606 (-) False LOC120574486

Expression Profile