RNA id: XM_039825349.1


Basic Information

Item Value
RNA id XM_039825349.1
length 1922
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC120574866
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 15404920 ~ 15415610 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCTGATGCCTCATGTTTGTGCAGCTCTAGTTTTTTGAATGCAGGCATTAAAAATCTTTTGATGTTCACACCACTAACTGTATGCAGCAGGATAATGAATGGAATCCGACTTATGTAAACATAGGCAGGTATAGAACCAACTAATTTGTTGTTAAGACCCAGTATCTTCTAACAGTTGAAAGAGATTGCGCGATATTCAAGACCAATGTCAGCACTGCTTCGGTCTTCCTGTGCTCACAGTCTCAGATCTGTGGATGGACTTAAACACAGCAAGGCTTGGAAATTATGCAACACAAGTTTGCTCCGGTGGGGTCGGTTGACAAGGCAGCTGCAGGTCTGCTTGCTTTGGGCCTGAAGCGAGGCGACAGGCTGGGAGTTTGGGGACCCAACATGTATGAGTGGATCCTTTTCCAGTTTGCTTCAGCCAAAGCAGGAATTATACTGGTGTCATTGAACACGGCCTATCAGGTGAAGGAAGTGGAGTTTACTCTAAAAAAGGTCCAGTGTAAAGCTGTGGTCTGCCCTACACGCTTTAAAACCCAAAACTTCTGTGAGATGCTGAGGGAGCTCTGCCCAGAGCTCGACAGGACGCCAGTAGGCATGATCAAAAGCTCCAGGTTGCCAGACTTGCGTATGGTGATAGTGACAGATAGCAGACAGCCAGGGATGCTCCACGTAGAGGATGTGATGCAAGCAGGGGAGAGTCAGCACCACAAAGAGCTGATGATGGATCTGCAGAGCAAACTGTCCTTCGATGAGCCCATCAACATTCAGTTCACATCAGGGACGACAGGAAGTCCAAAGGGAGCCAGTCTTTCCCACCACAATATTGTAAACAATGCTTACTTTATTGGTCTCCGAATAGGTTTTGGACGGAGAcctcaggtGCGAGTGTGTATGCCCGTTCCCATGTACCACTGCTTTGGCTCTGTGTTGGGAGGGATGAGTATGGCATTGCATGGTATCACACTGGTCTTCCCTTCCTCTGGCTACAACAGCCGAGCCAACCTGGAGGCCATTCAGAGTGAAAAGTGCAATTTCATCTATGGCACTCCTACAATGTTCACTGACATGCTTAGCCAACAGGATTTACACAAGTATGATTTATCATCAATTGAAGCTGGCATCATGGCAGGTTCACCGTGCCCTCCTGAGATTGTGAGAAAAATGATAACAGACATGAACATGAAAGAGCTAATGATCGCTTATGGATCCACTGAGAACAGCCCCATCACATTTCTGGGATTCCCACAAGACAATGAAGAGCTGAAGATAAATACTGTTGGATGTATCATGAGCCACACTGAGGCTAAAGTGGTGGACCCTACTACTGGGGAGATTGTCCCTCTGGGGGCCTCAGGAGAGCTGATGATCAGAGGCAGCTGTGTGATGCACGGATACTGGGACGATCCTGAGAAAACCAGAGAGGTTATCTCCCAAGACCGCTGGTACAGGACTGGTGACACGGCCAGTCTGAACAGTTTGGGATACTGCCGCATTGAAGGACGCATAAAGGACATGATCATCCGAGGAGGGGAGAACATCTACCCTGCTGAGATAGAGCAATTTCTCTATACACATCCTAAAGTCCAGGAGGTACAGGTGGTTGGAGTGAAGGATGAGAGGCTGGGCGAGCAGGTGTGTGCCTGCATCAGGCTGAGGGAGGGCCAGACCTCCACTGCAGAGGAGATAAGAGCATTCTGCAAAGGCCAGataTCTCACTTCAAGATCCCACACTATGTGATCTTTGTCGACAGCTACCCTCTGACAGTCTCTGGAAAGATCAAGAAGAACATATTAAAGGAGGAAATGGAGAAGATATTAGGTCTTTAGTTTTGTGAACCCTGACGGACTGCGTTTGAGTGCATCAGCTGGGAAAGTCAGAAACTGAGCGGTGCAGAATTAATGCTTTGACCGAGAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210269 lncRNA downstream 351 15368229 ~ 15404569 (-) True G155151
TU210240 lncRNA downstream 91328 15312080 ~ 15313592 (-) True G155126
TU210217 lncRNA downstream 242485 15156429 ~ 15162435 (-) True G155106
TU210204 lncRNA downstream 265067 15133957 ~ 15139853 (-) False LOC120574278
TU210145 lncRNA downstream 397898 15003056 ~ 15007022 (-) False LOC120573849
TU210385 lncRNA upstream 111339 15526949 ~ 15527605 (-) True G155232
TU210389 lncRNA upstream 125947 15541557 ~ 15544017 (-) True G155234
TU210397 lncRNA upstream 135394 15551004 ~ 15632836 (-) True G155239
TU210400 lncRNA upstream 138433 15554043 ~ 15554886 (-) True G155242
TU210482 lncRNA upstream 266759 15682369 ~ 15691652 (-) True G155295
XM_039825464.1 mRNA downstream 11717 15391738 ~ 15393203 (-) True LOC120574947
XM_039825760.1 mRNA downstream 58360 15334362 ~ 15346560 (-) True hs3st3b1a
XM_039824573.1 mRNA downstream 268488 15106757 ~ 15136432 (-) False LOC120574278
XM_039823820.1 mRNA upstream 1435 15417045 ~ 15424203 (-) True LOC120573906
XM_039825871.1 mRNA upstream 27514 15443124 ~ 15449517 (-) False metrnla
XM_039825870.1 mRNA upstream 27514 15443124 ~ 15448345 (-) True metrnla
XM_039823872.1 mRNA upstream 60749 15476359 ~ 15505454 (-) True tbcd
XM_039823873.1 mRNA upstream 60749 15476359 ~ 15505100 (-) False tbcd
unassigned_transcript_853 other downstream 394580 15009798 ~ 15010340 (-) True LOC120573850
unassigned_transcript_852 other downstream 404776 14998773 ~ 15000144 (-) True LOC120574429
TU210040 other downstream 547363 14851939 ~ 14857557 (-) False LOC120575102
TU210041 other downstream 547363 14851939 ~ 14857557 (-) True LOC120575102
TU210042 other downstream 576700 14796026 ~ 14828220 (-) False LOC120574214
TU210305 other upstream 27554 15443164 ~ 15449503 (-) False metrnla
unassigned_transcript_854 other upstream 148523 15564133 ~ 15564204 (-) True trnae-cuc_25
XR_005641871.1 other upstream 302237 15717847 ~ 15724422 (-) False tecra
TU210508 other upstream 328065 15743675 ~ 15744117 (-) False LOC120574537
TU210507 other upstream 331707 15747317 ~ 15749430 (-) False LOC120574502

Expression Profile